Metagenome Family F086993

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086993
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	52 residues
Representative Sequence	MTDEAYVSAYQQLASQYDNNQTSMSEYLAAVQKLKDQYLKGRSSSTALPVVP
Number of Associated Samples	89
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.68 %
% of genes near scaffold ends (potentially truncated)	18.18 %
% of genes from short scaffolds (< 2000 bps)	75.45 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.364 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (62.727 % of family members)
Environment Ontology (ENVO)	Unclassified (70.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (75.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.25% β-sheet: 0.00% Coil/Unstructured: 53.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00313	CSD	40.00
PF03401	TctC	19.09
PF13531	SBP_bac_11	2.73
PF13406	SLT_2	1.82
PF02696	SelO	1.82
PF00999	Na_H_Exchanger	1.82
PF04955	HupE_UreJ	1.82
PF04752	ChaC	0.91
PF00248	Aldo_ket_red	0.91
PF00596	Aldolase_II	0.91
PF07690	MFS_1	0.91
PF02771	Acyl-CoA_dh_N	0.91
PF02776	TPP_enzyme_N	0.91
PF06240	COXG	0.91
PF05977	MFS_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	19.09
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.82
COG0397	Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O)	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.82
COG2370	Hydrogenase/urease accessory protein HupE	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.82
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.82
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.82
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.91
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.91
COG3427	Carbon monoxide dehydrogenase subunit CoxG	Energy production and conversion [C]	0.91
COG3703	Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation)	Inorganic ion transport and metabolism [P]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.45 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	34.55 %
Unclassified	root	N/A	33.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	12.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	12.73 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.64 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.73 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	12.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Betaproteobacteria bacterium SG8_41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_41	0.91 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	12.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Betaproteobacteria bacterium SG8_41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_41	0.91 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	12.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
unclassified Ramlibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Betaproteobacteria bacterium SG8_41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_41	0.91 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Pseudomonas syringae group genomosp. 1	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1	12.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Ramlibacter sp. B156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. B156	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Betaproteobacteria bacterium SG8_41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_41	0.91 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	12.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Ramlibacter sp. B156	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. B156	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Betaproteobacteria bacterium SG8_41	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_41	0.91 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004047\|Ga0055499_10050311	Not Available	667	Open in IMG/M
3300004157\|Ga0062590_102034269	Not Available	597	Open in IMG/M
3300005438\|Ga0070701_10919216	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005546\|Ga0070696_100535199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	937	Open in IMG/M
3300005836\|Ga0074470_10183376	All Organisms → cellular organisms → Bacteria → Proteobacteria	60220	Open in IMG/M
3300006755\|Ga0079222_11182789	Not Available	682	Open in IMG/M
3300009597\|Ga0105259_1085197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	736	Open in IMG/M
3300009597\|Ga0105259_1091947	Not Available	712	Open in IMG/M
3300009609\|Ga0105347_1035365	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300009610\|Ga0105340_1014090	All Organisms → cellular organisms → Bacteria	3146	Open in IMG/M
3300009610\|Ga0105340_1225135	Not Available	797	Open in IMG/M
3300009610\|Ga0105340_1409946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	604	Open in IMG/M
3300009678\|Ga0105252_10022563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2267	Open in IMG/M
3300009678\|Ga0105252_10033524	Not Available	1889	Open in IMG/M
3300009873\|Ga0131077_10121593	All Organisms → cellular organisms → Bacteria → Proteobacteria	3050	Open in IMG/M
3300010400\|Ga0134122_10129982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2028	Open in IMG/M
3300011397\|Ga0137444_1038391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	720	Open in IMG/M
3300011397\|Ga0137444_1074052	Not Available	538	Open in IMG/M
3300011399\|Ga0137466_1040017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	698	Open in IMG/M
3300011405\|Ga0137340_1024321	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300011406\|Ga0137454_1000326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2500	Open in IMG/M
3300011406\|Ga0137454_1021695	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300011407\|Ga0137450_1057983	Not Available	720	Open in IMG/M
3300011409\|Ga0137323_1004040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3631	Open in IMG/M
3300011409\|Ga0137323_1054115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	883	Open in IMG/M
3300011416\|Ga0137422_1100905	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300011417\|Ga0137326_1039436	Not Available	1017	Open in IMG/M
3300011419\|Ga0137446_1023649	Not Available	1269	Open in IMG/M
3300011420\|Ga0137314_1102758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	701	Open in IMG/M
3300011421\|Ga0137462_1167512	Not Available	541	Open in IMG/M
3300011421\|Ga0137462_1168048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	541	Open in IMG/M
3300011423\|Ga0137436_1018402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1725	Open in IMG/M
3300011423\|Ga0137436_1119781	Not Available	699	Open in IMG/M
3300011429\|Ga0137455_1093606	Not Available	876	Open in IMG/M
3300011433\|Ga0137443_1162044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	665	Open in IMG/M
3300011436\|Ga0137458_1011956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2004	Open in IMG/M
3300011437\|Ga0137429_1177469	Not Available	665	Open in IMG/M
3300011441\|Ga0137452_1201259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	676	Open in IMG/M
3300011441\|Ga0137452_1222142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	641	Open in IMG/M
3300011442\|Ga0137437_1037285	Not Available	1665	Open in IMG/M
3300011443\|Ga0137457_1023152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1646	Open in IMG/M
3300011444\|Ga0137463_1015960	All Organisms → cellular organisms → Bacteria → Proteobacteria	2646	Open in IMG/M
3300011445\|Ga0137427_10189419	Not Available	854	Open in IMG/M
3300012035\|Ga0137445_1003373	All Organisms → cellular organisms → Bacteria	2557	Open in IMG/M
3300012038\|Ga0137431_1013477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2237	Open in IMG/M
3300012122\|Ga0137332_1010643	Not Available	983	Open in IMG/M
3300012129\|Ga0137345_1005246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1300	Open in IMG/M
3300012134\|Ga0137330_1015523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	897	Open in IMG/M
3300012137\|Ga0137346_1024796	Not Available	753	Open in IMG/M
3300012157\|Ga0137353_1004951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1946	Open in IMG/M
3300012161\|Ga0137336_1093926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	557	Open in IMG/M
3300012166\|Ga0137350_1006627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2005	Open in IMG/M
3300012168\|Ga0137357_1125163	Not Available	525	Open in IMG/M
3300012171\|Ga0137342_1026294	Not Available	1089	Open in IMG/M
3300012173\|Ga0137327_1079118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	731	Open in IMG/M
3300012226\|Ga0137447_1059551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	707	Open in IMG/M
3300012228\|Ga0137459_1136583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	718	Open in IMG/M
3300012231\|Ga0137465_1126923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	769	Open in IMG/M
3300012231\|Ga0137465_1207904	Not Available	586	Open in IMG/M
3300012232\|Ga0137435_1002137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5953	Open in IMG/M
3300012232\|Ga0137435_1175724	Not Available	658	Open in IMG/M
3300012670\|Ga0137335_1006330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1059	Open in IMG/M
3300012671\|Ga0137318_1002353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1361	Open in IMG/M
3300012907\|Ga0157283_10246086	Not Available	591	Open in IMG/M
3300012913\|Ga0157298_10168651	Not Available	673	Open in IMG/M
3300012944\|Ga0137410_10003553	All Organisms → cellular organisms → Bacteria → Proteobacteria	10556	Open in IMG/M
3300014861\|Ga0180061_1083646	Not Available	537	Open in IMG/M
3300014862\|Ga0180096_1000413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1588	Open in IMG/M
3300014864\|Ga0180068_1049639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	688	Open in IMG/M
3300014871\|Ga0180095_1000674	All Organisms → cellular organisms → Bacteria	3342	Open in IMG/M
3300014876\|Ga0180064_1137019	Not Available	520	Open in IMG/M
3300015248\|Ga0180079_1024822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	774	Open in IMG/M
3300015249\|Ga0180071_1017526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	885	Open in IMG/M
3300015252\|Ga0180075_1031918	Not Available	809	Open in IMG/M
3300015252\|Ga0180075_1057425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	657	Open in IMG/M
3300015253\|Ga0180081_1052892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	700	Open in IMG/M
3300015253\|Ga0180081_1109313	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300018056\|Ga0184623_10301463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	724	Open in IMG/M
3300018063\|Ga0184637_10002633	All Organisms → cellular organisms → Bacteria → Proteobacteria	11468	Open in IMG/M
3300018068\|Ga0184636_1146396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → unclassified Ramlibacter → Ramlibacter sp. B156	827	Open in IMG/M
3300018071\|Ga0184618_10258698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	737	Open in IMG/M
3300018077\|Ga0184633_10282877	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300018082\|Ga0184639_10266070	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300018083\|Ga0184628_10015384	All Organisms → cellular organisms → Bacteria	3732	Open in IMG/M
3300018083\|Ga0184628_10184526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	1090	Open in IMG/M
3300018083\|Ga0184628_10325402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	807	Open in IMG/M
3300018084\|Ga0184629_10174425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_41	1101	Open in IMG/M
3300018084\|Ga0184629_10290154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	860	Open in IMG/M
3300020060\|Ga0193717_1086098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	1018	Open in IMG/M
3300021081\|Ga0210379_10424133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	588	Open in IMG/M
3300022213\|Ga0224500_10111835	Not Available	1036	Open in IMG/M
3300023072\|Ga0247799_1085628	Not Available	556	Open in IMG/M
3300025324\|Ga0209640_11078436	Not Available	613	Open in IMG/M
3300027362\|Ga0208320_1000538	All Organisms → cellular organisms → Bacteria	4774	Open in IMG/M
3300027362\|Ga0208320_1002046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2317	Open in IMG/M
3300027573\|Ga0208454_1025041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1408	Open in IMG/M
3300028802\|Ga0307503_10012369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2570	Open in IMG/M
3300028802\|Ga0307503_10239468	Not Available	881	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10033952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1320	Open in IMG/M
3300031226\|Ga0307497_10008023	All Organisms → cellular organisms → Bacteria → Proteobacteria	2910	Open in IMG/M
3300031455\|Ga0307505_10190276	Not Available	945	Open in IMG/M
3300032144\|Ga0315910_10020750	All Organisms → cellular organisms → Bacteria → Proteobacteria	4880	Open in IMG/M
3300034149\|Ga0364929_0004261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3657	Open in IMG/M
3300034149\|Ga0364929_0090331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	958	Open in IMG/M
3300034149\|Ga0364929_0164560	Not Available	723	Open in IMG/M
3300034178\|Ga0364934_0398340	Not Available	521	Open in IMG/M
3300034257\|Ga0370495_0013986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2380	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	76.36%
Terrestrial	Environmental → Terrestrial	22.73%
Wastewater	Engineered → Wastewater	0.91%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	73.64%
Soil	Environmental → Terrestrial → Soil	19.09%
Floodplain	Environmental → Terrestrial → Floodplain	3.64%
Marine	Environmental → Aquatic → Marine	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	73.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.64%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.64%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Sand	Environmental → Terrestrial → Soil → Sand	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Sediment	Environmental → Aquatic → Marine → Sediment	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	73.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.09%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	62.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.91%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004047	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental	Open in IMG/M
3300011399	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT842_2	Environmental	Open in IMG/M
3300011405	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011421	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012122	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT200_2	Environmental	Open in IMG/M
3300012129	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2	Environmental	Open in IMG/M
3300012134	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2	Environmental	Open in IMG/M
3300012137	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2	Environmental	Open in IMG/M
3300012157	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2	Environmental	Open in IMG/M
3300012161	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT300_2	Environmental	Open in IMG/M
3300012166	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012171	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012670	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT293_2	Environmental	Open in IMG/M
3300012671	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT300_2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300014862	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da	Environmental	Open in IMG/M
3300014864	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D	Environmental	Open in IMG/M
3300014871	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_1Da	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300015248	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT530_16_10D	Environmental	Open in IMG/M
3300015249	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293A_16_10D	Environmental	Open in IMG/M
3300015252	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D	Environmental	Open in IMG/M
3300015253	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT590_16_10D	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300027362	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031237 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055499_100503111	3300004047	Natural And Restored Wetlands	MTEEAYISAYQKLASQYDNNQTSMGDYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0062590_1020342692	3300004157	Soil	MTDEAYISAYQKLSSQYLNNQTSMGDHLAAVQKLKDQYLKGRSSTALPVVP*
Ga0070701_109192162	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLKGRTSAALPVVP*
Ga0070696_1005351991	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLKGRSSVALPVVP*
Ga0074470_1018337645	3300005836	Sediment (Intertidal)	MTDEAYIAAYQKLANQYYNNQTSMGDHLAAVQQLKNQYLKGRSGAALPAIP*
Ga0079222_111827891	3300006755	Agricultural Soil	MMTDEAYIAAYQKLSNQYGNNQSSMGDYLAAIQKLKEQYLKGKSSTALPTVP*
Ga0105259_10851972	3300009597	Soil	MTEEAYVAAYQKLAVLYHNNQTSMSEYLAAMQQLKDQYLKGRSSSTALPVVP*
Ga0105259_10919472	3300009597	Soil	MTDEAYVSAYQKLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0105347_10353653	3300009609	Soil	RIMTDEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0105340_10140902	3300009610	Soil	MTDEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0105340_12251352	3300009610	Soil	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLKGRSSAALPVVP*
Ga0105340_14099462	3300009610	Soil	MTDEAYVSAYQQLASQYHNNQTSMSDYLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0105252_100225631	3300009678	Soil	MTDEVYIAAYQKLSSQYQNNQTSMGDHLAAVQKLKDQYLKGRSSAALPVVP*
Ga0105252_100335244	3300009678	Soil	MMTDEAYIAAYQKLSTQYHNNQTSMGDYLAAVQKLKEQYLKGRSSAALPATP*
Ga0131077_101215932	3300009873	Wastewater	MMTDEAYIAAYQKLASQYDNNQSSMGDHLAAIQKLKEQYLKGRSAAALPVVP*
Ga0134122_101299822	3300010400	Terrestrial Soil	MMTDEAYIAAYQKLSSQYQNNQSSMGDHLAAVQKLKDQYLKGRNSAALPVVP*
Ga0137444_10383911	3300011397	Soil	MMTDEAYIAAYQKLSSQYHSNQTSMGDYLAAVQKLKEQYLKGRSSAALPATP*
Ga0137444_10740521	3300011397	Soil	MTDEAYVTAYRQLASQYNNNQTSMSDFLAAMQKLKEQYLKGRSSSSALPVVPPQ*
Ga0137466_10400172	3300011399	Soil	MTDEAYVSAYQKLASQYNNNQTSMSDFLAAMQKLKEQYLKGRSSSSALPVVPPQ*
Ga0137340_10243211	3300011405	Soil	MTEEAYVAAYQKLAGLYHNNQTSMSEYLAAMQKLKDQYLKGRSSSTALPVVP*
Ga0137454_10003261	3300011406	Soil	MTDEAYVSAYQQLASQYNNNQTSMSDFLAAMQKLKEQYLKGRSSSSALPVVP*
Ga0137454_10216952	3300011406	Soil	AYQQLAILYNNNQTSMSEYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0137450_10579832	3300011407	Soil	MTEEAYVSAYQQLASQYDNNQTSMSEYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0137323_10040402	3300011409	Soil	MTEEAYVVAYQKLAGLYHNNQTSMSEYLAAMRQLKDQYLKGRNSSTALPVVP*
Ga0137323_10541151	3300011409	Soil	DEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0137422_11009052	3300011416	Soil	MTEEAYVAAYQKLAGLYHNNQTSMSEYLAAMRQLKDQYLKGRNSSTALPVVP*
Ga0137326_10394363	3300011417	Soil	MTDEAYISAYQKLVSQYNSNQTSMSEYLTAMQKLKEQYLKGRNGSAALPVVP*
Ga0137446_10236492	3300011419	Soil	MTEEAYVAAYQKLAGLYHNNQTSMSEYLAAMQQLKDQYLKGRNSSTALPVVL*
Ga0137314_11027581	3300011420	Soil	LPQGKRNMTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQKLKDQYLKGRSSGTALPVVP*
Ga0137462_11675122	3300011421	Soil	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQKLKDQYLKGRSSSTALPVVP*
Ga0137462_11680482	3300011421	Soil	AYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0137436_10184024	3300011423	Soil	MTEEAYVAAYQKLAGLYQNNQTSMSDYLAAVQQLKDQYLKGRSSSTALPVVP*
Ga0137436_11197812	3300011423	Soil	MTEEAYVSAYQQLAILYNNNQTSMSEYLAAVQKLKDQYLKGRSGSTALPVVP*
Ga0137455_10936062	3300011429	Soil	MTDEAYVSAYQQLASQYHNNQTSMSDYLAAMQKLKEQYLKGRSSSSALPVVPPQ*
Ga0137443_11620441	3300011433	Soil	MTEEAYVVAYQKLAGLYHNNQTSMSEYLAAMQQLKDQYLKGRNSSTALPVVL*
Ga0137458_10119565	3300011436	Soil	MTEEAYVSAYQQLANQYNNNQTSMSDYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0137429_11774691	3300011437	Soil	MTDEVYIAAYQKLSSQYQNNQTSMGDHLAAVQKLKDQYLKGRSNAALPVVP*
Ga0137452_12012591	3300011441	Soil	TEEAYVSAYQQLAILYNNNQTSMSEYLAAVQKLKDQYLKGRSGSTALPVVP*
Ga0137452_12221422	3300011441	Soil	MTEEAYVVAYQKLAGLYHNNQTSMSEYLAAMRQLKDQYLKGRSSSTALPVVP*
Ga0137437_10372851	3300011442	Soil	MTEEAYLSAYQQLASQYNNNQTSMSEYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0137457_10231523	3300011443	Soil	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQKLKDQYLKDRSSSTALPVVP*
Ga0137463_10159605	3300011444	Soil	MTEEAYVSAYRQLSSQYNNNQTSMSDYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0137427_101894193	3300011445	Soil	MTDEVYIAAYQKLSSQYQNNQTSMGDHLAAVQKLKDQYLKGRSNAALP
Ga0137445_10033734	3300012035	Soil	MTEEAYVVAYQKLAGLYHNNQTSMSEYLAAMQQLKDQYLKGRSSSTALPVVP*
Ga0137431_10134775	3300012038	Soil	MTDEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSS
Ga0137332_10106431	3300012122	Soil	MTEEAYVVAYQKLAGLYHNNQTSMSEYLAAMRQLKDQYLNGRSSSTALPVVP*
Ga0137345_10052461	3300012129	Soil	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQKLKDQYLKGRSSSTALPVIP*
Ga0137330_10155232	3300012134	Soil	MTDEAYVTAYRQLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0137346_10247962	3300012137	Soil	MTDEAYVSAYQQLASQYHNNQTSMSDYPAAMQKLKEQYLKGRNSSSALPVVP*
Ga0137353_10049515	3300012157	Soil	MTDEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRSSSSALPVVPPQ*
Ga0137336_10939262	3300012161	Soil	LNMTEEAYVAAYRQISSQYNNNQTSMSDYLAAVQKLKDQYLKGRSSSTALPVVPRNPGDG
Ga0137350_10066275	3300012166	Soil	MTEEAYVSAYQQLASQYDNNQTSMSEYLAAVQKLKDQYLKGRSS
Ga0137357_11251631	3300012168	Soil	MTDEAYVSAYQQLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0137342_10262941	3300012171	Soil	WFLRQGKRNMPEEAYVAAYQKLAGLYHNNQTSMSEYLAAMQQLKDQYLKGRNSSTALPVVP*
Ga0137327_10791182	3300012173	Soil	MTEEAYVAAYQKLAVLYHNNQTSMSEYLAAMQQLKDQYLKGRNSSTALPVVP*
Ga0137447_10595513	3300012226	Soil	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAVQKLKDQYLKGRSGSTALPVVP*
Ga0137459_11365831	3300012228	Soil	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQQLKDQYLKGRSSSTALPVVP*
Ga0137465_11269231	3300012231	Soil	MTEEAYVAAYRQLSSQYNNNQTSMSDYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0137465_12079042	3300012231	Soil	FLPQRKRNMTDEAYVSAYQQLASQYHNNQTSMEDYLAAVQKLKEQYLKGRGNAALPIVP*
Ga0137435_10021377	3300012232	Soil	YVSAYQQLAILYNNNQTSMSEYLAAVQKLKDQYLKGRSGSTALPVVP*
Ga0137435_11757242	3300012232	Soil	MTEEAYVSAYQQLAILYNNNQTSMSEYLAAVQKLKDQYLKGRSGS
Ga0137335_10063301	3300012670	Soil	MTEEAYVVAYQKLAGLYHNNQTSMSEYLAAMQQLKDQYLKGRSSSTALPVAP*
Ga0137318_10023531	3300012671	Soil	MTDEAYVSAYQQLASQYDNNQTSMSEYLAAVQKLKEQYLKGRNSSSALPVVP*
Ga0157283_102460861	3300012907	Soil	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLKGRSSTALPVVP*
Ga0157298_101686512	3300012913	Soil	MMTDEAYIAAYQKLSSQYQNNQSSMGDHLAAVQKLKDQYLKGRTSAALPVVP*
Ga0137410_100035534	3300012944	Vadose Zone Soil	MMTDEAYIAAYQKLSNQYCNNQTSMGDYLAAVQKLKEQYLKGKSSTALPAVP*
Ga0180061_10836461	3300014861	Soil	MTDEAYVSAYQQLASQYDNNQTSMSEYLAAVQKLKDQYLKGRSSSTALPVVP*
Ga0180096_10004131	3300014862	Soil	MTDEAYVTAYRQLASQYNNSQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0180068_10496391	3300014864	Soil	MTDEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGPNSSSALPVVP*
Ga0180095_10006743	3300014871	Soil	MTDEAYVSAYQQLASQYHNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0180064_11370192	3300014876	Soil	MTDEAYVTAYRQLASQYNNNQTSMSDYLAAMQKLKEQYLKGRNSSSALPVVP*
Ga0180079_10248222	3300015248	Soil	MDAVGSTSAYSVLITYRTDMMTDEAYIAAYQKLSTQYDNNQTSMGDHLAAVQKLKDQYLKGRSSATLPVVP*
Ga0180071_10175263	3300015249	Soil	MTEEAYVSAYQQLASQYDNNQTSMSEYLAAMQKLKDQYLKGRSSSTALPVI
Ga0180075_10319181	3300015252	Soil	MMTDEAYIAAYQKLSTQYDNNQTSMGDHLAAVQKLKDQYLKGRNSAALPVVP*
Ga0180075_10574253	3300015252	Soil	MTEEAYVAAYQKLAVLYHNNQTSMSEYLAAMQQLKDQYLKGRS
Ga0180081_10528922	3300015253	Soil	LITYRTDMMTDAAYIAAYQKLSTQYDNNQTSMGDHLAAVQKLKDQYLKGRNSAALPVVP*
Ga0180081_11093132	3300015253	Soil	FLPQGKRNMTEEAYLSAYQQLASQYNNNQTSMSEYLAAVQKLKDQYLKGRSSSTALPVVP
Ga0184623_103014631	3300018056	Groundwater Sediment	MTDEAYIAAYQKLDSQYQNNQTSMSDYLAALQLLKDQYLKGKRGEVVLPVVP
Ga0184637_100026334	3300018063	Groundwater Sediment	MTEEAYVAAYQKLAGLYQNNQTSMSDYLAAVQQLKDQYLKGRSSSTALPVVP
Ga0184636_11463962	3300018068	Groundwater Sediment	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQQLKDQYLKGRSSSTALPVVP
Ga0184618_102586982	3300018071	Groundwater Sediment	MTEAAYVAAYQKLAGLYQNNQTSMSDYLAAVQQLKDQYLKGRSSSTALP
Ga0184633_102828771	3300018077	Groundwater Sediment	RIMTDEAYIVAYQKLTSQYDDNHSNMEDYLAAIQKLKEQYLKGRTGTALPVVP
Ga0184639_102660702	3300018082	Groundwater Sediment	MTDEAYIVAYQKLTSQYDDNHSNMEDYLAAIQKLKEQYLKGRTGTALPVVP
Ga0184628_100153843	3300018083	Groundwater Sediment	MTDEAYIAAYQKLSSQYLNNQTSMGDHLAAVQKLKDQYLKGRSSTALPVVP
Ga0184628_101845263	3300018083	Groundwater Sediment	MTDEAYVSAYQQLASQYHNNQTSMSDYLAAMQKLKEQYLKGRNSSSALPVVP
Ga0184628_103254021	3300018083	Groundwater Sediment	MTDEAYVSAYQQLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP
Ga0184629_101744252	3300018084	Groundwater Sediment	MTEEAYVSAYQQLASQYNNNQTSMSEYLTAVQKLKDQYLKGRNSNTALPVVP
Ga0184629_102901542	3300018084	Groundwater Sediment	MTEEAYVAAYQKLAGLYHNNQTSMSEYLAAMQQLKDQYLKGRNSSTALPVVL
Ga0193717_10860981	3300020060	Soil	MTDAAYIAAYQKLTSEYQNNQTNMNDYLDAVQQLKDQYLKGRKSGAELPVVP
Ga0210379_104241332	3300021081	Groundwater Sediment	MTEEAYVAAYQKLAVLYHNNQTSMSEYLAAMQQLKDQYLKGRSSSTALPVV
Ga0224500_101118351	3300022213	Sediment	MMTDEAYIAAYQKLASQYDNNQSSMGDHLAAVQKLKEQYLKGRSAAALPVVP
Ga0247799_10856281	3300023072	Soil	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLKGRTSAALPVVP
Ga0209640_110784361	3300025324	Soil	MTDDAYIAAYQKLASQYNNNQTGMGDYLASIQKLKEQFLKGRAGAALPVVP
Ga0208320_10005385	3300027362	Soil	MTDEAYVSAYQLLASQYNNNQTSMSDFLAAMQKLKEQYLKGRNSSSALPVVP
Ga0208320_10020464	3300027362	Soil	MTEEAYVAAYRQLSSQYNNNQTSMSDYLAAVQKLKDQYLKGRNSSTALPVVP
Ga0208454_10250415	3300027573	Soil	MMTDEAYIAAYQKLSTQYHNNQTSMGDYLAAVQKLKEQYLKGRSSAALPATP
Ga0307503_100123692	3300028802	Soil	MTDEAYIAAYQKLSSQYLNNQTSMGDHLAAVQKLKDQYLKGRSGAALPVVP
Ga0307503_102394682	3300028802	Soil	MMTDEAYIAAYQKLSNQYGNNQTSMGDYLAAIQKLKEQYLKGKSSTALPAVP
(restricted) Ga0255310_100339521	3300031197	Sandy Soil	MMTDEAYIAAYQKLSNQYQNNQSSMGDHLAAVQKLKDQYLKGRNGTALPVIP
Ga0307497_100080236	3300031226	Soil	MMTDEAYIAAYQKLSSQYLNNQSSMGDHLAAVQKLKDQYLKGRNSAALPVVP
(restricted) Ga0255334_10378202	3300031237	Sandy Soil	MMTDEAYIAAYQKLSNQYQNNQSSMGDHLAAVQKLKDQYL
Ga0307505_101902763	3300031455	Soil	MQPDTRNMMTDEAYIAAYQKLASQYDNNQSSMGDHLAAIQKLKEQYLKGRNGAALPVVP
Ga0310891_102517801	3300031913	Soil	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLK
Ga0310899_103667281	3300032017	Soil	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQY
Ga0315910_100207504	3300032144	Soil	MTDEAYIAAYQKLASQYDNNQSSMGDHLAAIQKLKEQYLKGRNGAALPVVP
Ga0364929_0004261_1046_1204	3300034149	Sediment	MTDEAYVSAYQQLASQYHNNQTSMSDYLTAMQKLKEQYLKGRNSSSALPVVP
Ga0364929_0090331_696_854	3300034149	Sediment	MTEEAYVSAYQQLAILYNNNQTSMSEYLAAVQKLKDQYLKGRSGSTALPVVP
Ga0364929_0164560_231_389	3300034149	Sediment	MTEEAYVSAYQQLASQYNNNQTSMSEYLAAMQKLKDQYLKGRSSSTALPVVP
Ga0364934_0398340_92_265	3300034178	Sediment	MEKRNMTDEAYISASQQLASQYHSNQTSMSDYLVAVQKLKEQYLKGRSSSTALPVVP
Ga0370495_0013986_2050_2208	3300034257	Untreated Peat Soil	MMTDEAYIAAYQKLSSQYHNNQSSMGDHLAAVQKLKDQYLKGRSSAALPVVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters