Metagenome Family F086914

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086914
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	73 residues
Representative Sequence	ADYPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF
Number of Associated Samples	85
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.18 %
% of genes from short scaffolds (< 2000 bps)	94.55 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.000 % of family members)
Environment Ontology (ENVO)	Unclassified (51.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.61% β-sheet: 11.11% Coil/Unstructured: 65.28%
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13620	CarboxypepD_reg	48.18
PF14559	TPR_19	4.55
PF00378	ECH_1	1.82
PF03279	Lip_A_acyltrans	0.91
PF01432	Peptidase_M3	0.91
PF01894	UPF0047	0.91
PF02954	HTH_8	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.91
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.91
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.91
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	85.45 %
Unclassified	root	N/A	7.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.00 %
Unclassified	root	N/A	7.27 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.00 %
Unclassified	root	N/A	7.27 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.00 %
Unclassified	root	N/A	7.27 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.91 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.00 %
Unclassified	root	N/A	7.27 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.00 %
Unclassified	root	N/A	7.27 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0865927	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300000956\|JGI10216J12902_108466752	All Organisms → cellular organisms → Bacteria → Acidobacteria	639	Open in IMG/M
3300003465\|P52013CM_1053161	All Organisms → cellular organisms → Bacteria → Acidobacteria	943	Open in IMG/M
3300005093\|Ga0062594_100938015	All Organisms → cellular organisms → Bacteria → Acidobacteria	823	Open in IMG/M
3300005290\|Ga0065712_10710152	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300005293\|Ga0065715_10528827	All Organisms → cellular organisms → Bacteria → Acidobacteria	757	Open in IMG/M
3300005332\|Ga0066388_101461549	All Organisms → cellular organisms → Bacteria → Acidobacteria	1192	Open in IMG/M
3300005334\|Ga0068869_101817267	Not Available	545	Open in IMG/M
3300005339\|Ga0070660_101779020	Not Available	525	Open in IMG/M
3300005340\|Ga0070689_101464693	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005343\|Ga0070687_100644679	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300005343\|Ga0070687_100845347	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300005354\|Ga0070675_101148475	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300005356\|Ga0070674_100703887	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300005440\|Ga0070705_101425711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300005455\|Ga0070663_101951454	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300005457\|Ga0070662_100143034	All Organisms → cellular organisms → Bacteria → Acidobacteria	1856	Open in IMG/M
3300005459\|Ga0068867_101846468	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300005466\|Ga0070685_11045711	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300005536\|Ga0070697_100152862	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300005545\|Ga0070695_100679040	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300005545\|Ga0070695_100939006	All Organisms → cellular organisms → Bacteria → Acidobacteria	700	Open in IMG/M
3300005546\|Ga0070696_100779240	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300005546\|Ga0070696_100993920	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300005549\|Ga0070704_100538376	All Organisms → cellular organisms → Bacteria → Acidobacteria	1019	Open in IMG/M
3300005564\|Ga0070664_102281062	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300005577\|Ga0068857_101922384	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300005578\|Ga0068854_100332460	All Organisms → cellular organisms → Bacteria → Acidobacteria	1238	Open in IMG/M
3300005615\|Ga0070702_100983733	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300005615\|Ga0070702_101105275	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005615\|Ga0070702_101684320	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300005617\|Ga0068859_100178528	All Organisms → cellular organisms → Bacteria → Acidobacteria	2206	Open in IMG/M
3300005617\|Ga0068859_102714143	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300005618\|Ga0068864_100296951	All Organisms → cellular organisms → Bacteria → Acidobacteria	1511	Open in IMG/M
3300005618\|Ga0068864_101937590	Not Available	595	Open in IMG/M
3300005840\|Ga0068870_11106595	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300005844\|Ga0068862_101428695	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300006794\|Ga0066658_10911397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300006847\|Ga0075431_101134694	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300006954\|Ga0079219_10614068	All Organisms → cellular organisms → Bacteria → Acidobacteria	800	Open in IMG/M
3300006954\|Ga0079219_11597406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300009011\|Ga0105251_10596203	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300009093\|Ga0105240_11103790	All Organisms → cellular organisms → Bacteria → Acidobacteria	844	Open in IMG/M
3300009098\|Ga0105245_12675706	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300009147\|Ga0114129_11417915	Not Available	856	Open in IMG/M
3300009148\|Ga0105243_11774338	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300009162\|Ga0075423_10289877	All Organisms → cellular organisms → Bacteria → Acidobacteria	1715	Open in IMG/M
3300009174\|Ga0105241_10129447	All Organisms → cellular organisms → Bacteria → Acidobacteria	2042	Open in IMG/M
3300009177\|Ga0105248_12189825	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300009177\|Ga0105248_12568381	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300009545\|Ga0105237_10013065	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	8718	Open in IMG/M
3300009545\|Ga0105237_10467596	All Organisms → cellular organisms → Bacteria → Acidobacteria	1267	Open in IMG/M
3300009553\|Ga0105249_11905940	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300009553\|Ga0105249_12740384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300010039\|Ga0126309_10310510	All Organisms → cellular organisms → Bacteria → Acidobacteria	915	Open in IMG/M
3300010047\|Ga0126382_10202976	All Organisms → cellular organisms → Bacteria → Acidobacteria	1412	Open in IMG/M
3300010047\|Ga0126382_10659584	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300010047\|Ga0126382_11581421	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300010358\|Ga0126370_12069591	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300010359\|Ga0126376_10761405	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300010375\|Ga0105239_10201921	All Organisms → cellular organisms → Bacteria → Acidobacteria	2227	Open in IMG/M
3300010375\|Ga0105239_11655761	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300010397\|Ga0134124_10861505	All Organisms → cellular organisms → Bacteria → Acidobacteria	910	Open in IMG/M
3300010397\|Ga0134124_11952649	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300010397\|Ga0134124_12109259	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300010399\|Ga0134127_10343215	All Organisms → cellular organisms → Bacteria → Acidobacteria	1456	Open in IMG/M
3300010399\|Ga0134127_10412390	All Organisms → cellular organisms → Bacteria → Acidobacteria	1339	Open in IMG/M
3300010399\|Ga0134127_10692461	All Organisms → cellular organisms → Bacteria → Acidobacteria	1058	Open in IMG/M
3300010399\|Ga0134127_10713178	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300010399\|Ga0134127_11047115	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300012208\|Ga0137376_10879148	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300012488\|Ga0157343_1040183	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300012532\|Ga0137373_11264398	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300012882\|Ga0157304_1112614	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300012918\|Ga0137396_11100219	Not Available	568	Open in IMG/M
3300012927\|Ga0137416_11759225	Not Available	566	Open in IMG/M
3300012948\|Ga0126375_11228498	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300012951\|Ga0164300_10583899	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300012951\|Ga0164300_11179310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300013100\|Ga0157373_11581816	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300013297\|Ga0157378_11101797	All Organisms → cellular organisms → Bacteria → Acidobacteria	831	Open in IMG/M
3300013307\|Ga0157372_12133981	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300014745\|Ga0157377_10038140	All Organisms → cellular organisms → Bacteria → Acidobacteria	2651	Open in IMG/M
3300015371\|Ga0132258_11725369	All Organisms → cellular organisms → Bacteria → Acidobacteria	1579	Open in IMG/M
3300015372\|Ga0132256_102549974	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300018066\|Ga0184617_1270187	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300025900\|Ga0207710_10697250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300025904\|Ga0207647_10042718	All Organisms → cellular organisms → Bacteria	2842	Open in IMG/M
3300025904\|Ga0207647_10219272	All Organisms → cellular organisms → Bacteria → Acidobacteria	1097	Open in IMG/M
3300025907\|Ga0207645_10854383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	619	Open in IMG/M
3300025907\|Ga0207645_11131148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300025908\|Ga0207643_10662111	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300025921\|Ga0207652_11829402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300025932\|Ga0207690_10393105	All Organisms → cellular organisms → Bacteria → Acidobacteria	1104	Open in IMG/M
3300025940\|Ga0207691_11491546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300025941\|Ga0207711_12030708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300025945\|Ga0207679_11651240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300025949\|Ga0207667_11954862	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300025960\|Ga0207651_12155727	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300025981\|Ga0207640_10171526	All Organisms → cellular organisms → Bacteria → Acidobacteria	1617	Open in IMG/M
3300026035\|Ga0207703_12093267	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300026075\|Ga0207708_11996937	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300026095\|Ga0207676_11826359	Not Available	606	Open in IMG/M
3300026142\|Ga0207698_10375605	All Organisms → cellular organisms → Bacteria → Acidobacteria	1351	Open in IMG/M
3300026142\|Ga0207698_11131557	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300026285\|Ga0209438_1146347	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300028381\|Ga0268264_10866315	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300031740\|Ga0307468_101307166	Not Available	661	Open in IMG/M
3300033412\|Ga0310810_11184717	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300033412\|Ga0310810_11490433	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.64%
Environmental	Environmental	46.36%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	53.64%
Terrestrial	Environmental → Terrestrial	45.45%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.82%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.09%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	7.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	6.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08659272	3300000033	Soil	MNARVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDXLQPSIIXLTSGFHLPFSVRLGARFEF*
JGI10216J12902_1084667522	3300000956	Soil	ADYPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF*
P52013CM_10531612	3300003465	Ore Pile And Mine Drainage Contaminated Soil	DYPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSVRLGARFEF*
Ga0062594_1009380151	3300005093	Soil	LGRTPFYSQLDLHADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSFRLGARFEF*
Ga0065712_107101521	3300005290	Miscanthus Rhizosphere	RTPFFSQLDLHADYPWVINDRAKISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0065715_105288272	3300005293	Miscanthus Rhizosphere	QLDLHADVPFAISEHQRISFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSIISLTSGYHLPFSMRLGARYEF*
Ga0066388_1014615491	3300005332	Tropical Forest Soil	DYPWVINEHERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLPFSMRLGARFEF*
Ga0068869_1018172671	3300005334	Miscanthus Rhizosphere	PWVINDRAKVSFIADFFNVTNHRRLRLPDQFRQLDLGENNPDFLQPSTINLTSGFHLPFSVRLGMRFEF*
Ga0070660_1017790201	3300005339	Corn Rhizosphere	HADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSFRLGARFEF*
Ga0070689_1014646931	3300005340	Switchgrass Rhizosphere	QLDLHADYPWVINDRAKVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLSSGFHLPFSMRLGARFEF*
Ga0070687_1006446791	3300005343	Switchgrass Rhizosphere	HADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSLRLGARFEF*
Ga0070687_1008453472	3300005343	Switchgrass Rhizosphere	RISFIADFFNVTNNRRLRLPDQFRQLDLGADNPDFLQPSTINLTSGFHLPFSVRLGARFEF*
Ga0070675_1011484751	3300005354	Miscanthus Rhizosphere	RTPFYNQLDLHADIPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSTINLTSGFHLPFSMRLGARFEF*
Ga0070674_1007038871	3300005356	Miscanthus Rhizosphere	ISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGYHLPFSMRLGARFEF
Ga0070705_1014257112	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	ADYPWVINEHERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLPFSMRLGARFEF*
Ga0070663_1019514541	3300005455	Corn Rhizosphere	TPFFNQLDLHADVPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0070662_1001430343	3300005457	Corn Rhizosphere	RARVSFVADFFNVTNSRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF*
Ga0068867_1018464682	3300005459	Miscanthus Rhizosphere	SQLDLHADYPWVINDRAKISFIADFFNVTNNRKLRLPDQFRQLDLGENNPDFLQPSIINLSSGFHLPFSMRLGARFEF*
Ga0070685_110457111	3300005466	Switchgrass Rhizosphere	NERQRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGYHLPFSMRLGARFEF*
Ga0070697_1001528622	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SFIADFFNVTNSRKVLLPDQFSQLDLGAVNPDFLQPQINLTTLSQGFRLPFNMRLGMRFEF*
Ga0070695_1006790401	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSLRLGARFEF*
Ga0070695_1009390062	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	HADYPWVINERARVSFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSTINLTSGFHLPFSMRLGARFEF*
Ga0070696_1007792402	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	KLGRTPFYNQLDLHADYPWVINEHARISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0070696_1009939201	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	HADYPWVINEHERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLPFSMRLGARFEF*
Ga0070704_1005383761	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	HADYPWVINERARVSFVADFFNVTNSRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF*
Ga0070664_1022810622	3300005564	Corn Rhizosphere	LGRTPFYNQLDLHADVPFNLDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0068857_1019223841	3300005577	Corn Rhizosphere	QLDLHADYPWVINERAKISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0068854_1003324602	3300005578	Corn Rhizosphere	LHADYPWVINERAKVSFIADFFNVTNNRRLRLPDQFRQLDLGADNPDFLQPSTINLTSGFHLPFSVRLGMKFEF*
Ga0070702_1009837332	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	DLHADYPWVINDRAKISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0070702_1011052751	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	TPFFSQLDLHADYPWVINDRAKVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSMRLGARFEF*
Ga0070702_1016843201	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QLDLHADYPWVINERARISFIADFFNVTNNRRLRLPDQFKQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0068859_1001785284	3300005617	Switchgrass Rhizosphere	QLDLHADVPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSVINLTSGFHLPFSMRLGARWEF*
Ga0068859_1027141432	3300005617	Switchgrass Rhizosphere	LDLHADYPWVINEHERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLPFSMRLGARFEF*
Ga0068864_1002969513	3300005618	Switchgrass Rhizosphere	PFFAQLDLHADYPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF*
Ga0068864_1019375901	3300005618	Switchgrass Rhizosphere	YSQLDLHADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSLRLGARFEF*
Ga0068870_111065951	3300005840	Miscanthus Rhizosphere	ERARVSFVADFFNVTNSRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF*
Ga0068862_1014286952	3300005844	Switchgrass Rhizosphere	HADYPWVINERAKLSFIADFFNVTNSRRLRLPDQFRQLDLGANNPDFLQPSTINLTSGFHLPFSVRLGARFEF*
Ga0066658_109113972	3300006794	Soil	TPFYTQLDLHGDVPFSINERTRISFIADFFNVTNNRRLRLPDQFRQLDLGQPNPDFLQPSVITLTSGFHLPFSMRLGARLEF*
Ga0075431_1011346942	3300006847	Populus Rhizosphere	QLDLHADYPWVINERARVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSVRLGARFEF*
Ga0079219_106140681	3300006954	Agricultural Soil	YPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0079219_115974061	3300006954	Agricultural Soil	RISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLKPSIISPTSGFHLPFSVRLGARFEF*
Ga0105251_105962032	3300009011	Switchgrass Rhizosphere	LGRTPFYNQLDLHADVPFNIDERRRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0105240_111037901	3300009093	Corn Rhizosphere	YPWVISERAKISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSMRLGARFEF*
Ga0105245_126757061	3300009098	Miscanthus Rhizosphere	RISFIADFFNVTNNRRLRLPDQFRQLDLGADNPDFLQPSTINLTSGFHLPFSMRLGARFEF*
Ga0114129_114179152	3300009147	Populus Rhizosphere	ERTKLSFIADFFNVTNSRRVLLPDQFRQLDLGADNPDFLQPQINLTTLNQGFRLPFNMR*
Ga0105243_117743381	3300009148	Miscanthus Rhizosphere	KLGRTPFYTQLDLHADVPFAINERHKISFIADFFNVTNNRRLRLPDQFRQLDLQADNPDFLQPSTINLTSGFHLPFSFRLGARYEF*
Ga0075423_102898771	3300009162	Populus Rhizosphere	PWVINERERISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0105241_101294473	3300009174	Corn Rhizosphere	DVPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0105248_121898251	3300009177	Switchgrass Rhizosphere	PFFSQLDLHADYPYVINERMRMSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSVRLGARFEF*
Ga0105248_125683812	3300009177	Switchgrass Rhizosphere	WVITEHARISFIADFFNVTNSRKLRLPDQFRQLDLGETNPDFLQPSIINLNSGFHLPLSLRLGARFEF*
Ga0105237_100130651	3300009545	Corn Rhizosphere	LHADYPWVISERAKISFIADFFNVTNNRKLRLPDQFRQLDLGENNPDFLQPSIINLSSGFHLPFSMRLGARFEF*
Ga0105237_104675962	3300009545	Corn Rhizosphere	HADVPFSINERQRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0105249_119059401	3300009553	Switchgrass Rhizosphere	NERARISFIADFFNVTNNRRLRLPDQFRQLDLGADNPDFLQPSTINLTSGFHLPFSVRLGARFEF*
Ga0105249_127403841	3300009553	Switchgrass Rhizosphere	HERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLPFSMRLGARFEF*
Ga0126309_103105101	3300010039	Serpentine Soil	STQLDLHADYPWVINDRARISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSVITLTSGYHLPFSVRLGARFEF*
Ga0126382_102029761	3300010047	Tropical Forest Soil	WVINERAKISFIADFFNVTNNRKLRLPDQFRQLDLGANNPDFLQPSTISLTSGFHLPFSMRLGARFEF*
Ga0126382_106595842	3300010047	Tropical Forest Soil	INERARISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0126382_115814211	3300010047	Tropical Forest Soil	LDLHADVPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0126370_120695911	3300010358	Tropical Forest Soil	LHADYPWVINERARISFIADFFNVTNNRRVRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0126376_107614051	3300010359	Tropical Forest Soil	EKISLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLRPSTINLTSAFHLPFSMRLGARFEF*
Ga0105239_102019211	3300010375	Corn Rhizosphere	LDLHADVPFAISEHQRISFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSIISLTSGYHLPFSMRLGARYEF*
Ga0105239_116557611	3300010375	Corn Rhizosphere	LHADVPFAINERTRVSFIADFFNVTNNRRLRLPDQFRQLDLNADNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0134124_108615052	3300010397	Terrestrial Soil	TPFFNQLDLHADYPWVINDRARVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0134124_119526491	3300010397	Terrestrial Soil	DYPWVINERARISFIADFFNVKNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0134124_121092591	3300010397	Terrestrial Soil	ADYPWVINDRARISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIITLTSGYHLPFSMRLGARFEF*
Ga0134127_103432152	3300010399	Terrestrial Soil	DLHADVPFAINERHKISFIADFFNVTNNRRLRLPDQFRQLDLQADNPDFLQPSTINLTSGFHLPFSFRLGARYEF*
Ga0134127_104123902	3300010399	Terrestrial Soil	VINDRARISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0134127_106924611	3300010399	Terrestrial Soil	TPFYNQLDLHADVPFAINEKARVSFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSIITLTSGYHLPFSMRLGARFEF*
Ga0134127_107131782	3300010399	Terrestrial Soil	VPFAINERHKISFIADFFNVTNNRRLRLPDQFRQLDLQADNPDFLQPSIINLTSGFHLPFSFRLGARFEF*
Ga0134127_110471151	3300010399	Terrestrial Soil	PFYNQLDLHADYPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLNADNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0137376_108791481	3300012208	Vadose Zone Soil	YPWKMSEKTKLSFIADFFNVTNSRKVLLPDQFSQLDLGAVNPDFLQPQINLTTLNQGFRLPFNMRLGMRFEF*
Ga0157343_10401831	3300012488	Arabidopsis Rhizosphere	RAKVSFIADFFNVTNNRRVRLPDQFRQLDLGENNPDFLQPSIINLTSGYHLPFSMRLGMRFEF*
Ga0137373_112643981	3300012532	Vadose Zone Soil	TPFFTKLDLHADYPWQINERAKLSFIADFFNVTNNRKVLLPDQFRQLDLGANNPDFLQPQINLTTLSQGYRPPFNMRLGMRFEF*
Ga0157304_11126142	3300012882	Soil	PFFSQLDLHADYPWVINDRAKVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSMRLGARFEF*
Ga0137396_111002192	3300012918	Vadose Zone Soil	YQIDLHADYPYVINEKMRISFIADLFNVTNVRKQRFPDQFHQLDLGVTNVDFLQPSFVTLTSGFHLPFNMRLGMRFEF*
Ga0137416_117592252	3300012927	Vadose Zone Soil	LGRSPKYYQIDLHADYPYVINEKMRISFIADLFNVTNVRKQRYPDQWHQLDLGVTNVDFLQPSIITLTSGYHLPFNMRLGMRFEF*
Ga0126375_112284981	3300012948	Tropical Forest Soil	NERAKISFIADFFNVTNNRKLRLPDQFRQLDLGANNPDFLQPSIINLSSGFHLPFSMRLGARFEF*
Ga0164300_105838991	3300012951	Soil	LDLHADYPWVINDRARVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSISNLTSGFHLPFSARLGVRFEF*
Ga0164300_111793102	3300012951	Soil	AYYPWVINEHERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLLFSMRLGARFEF*
Ga0157373_115818162	3300013100	Corn Rhizosphere	WVINDRAKISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0157378_111017972	3300013297	Miscanthus Rhizosphere	HADVPFTINERARVSFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSTINLTSGFHLPFSMRLGARFEF*
Ga0157372_121339811	3300013307	Corn Rhizosphere	LGRTPFFNQLDLHADVPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0157377_100381401	3300014745	Miscanthus Rhizosphere	ISFIADFFNVTNNRRVRLPDQFRQLDLGENNPDFLQPSIINLTSGYHLPFSMRLGMRFEF
Ga0132258_117253691	3300015371	Arabidopsis Rhizosphere	DRAKISFIADFFNVTNSRKLRLPDQFRQLDLGADNPDFLQPSIINLTSGFHLPFSMRLGARFEF*
Ga0132256_1025499741	3300015372	Arabidopsis Rhizosphere	FAQLDLHADYPYVINEHARISLIADFFNVTNNRKLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARLEF*
Ga0184617_12701872	3300018066	Groundwater Sediment	DYPWKISETTKLSFVADFFNVTNNRAVRLPDQFLQLDLGAANPDFLTPSITTFTSGFYLPFNMRMGMRFEF
Ga0207710_106972501	3300025900	Switchgrass Rhizosphere	SFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSIISLTSGYHLPFSMRLGARYEF
Ga0207647_100427181	3300025904	Corn Rhizosphere	TPFYSQLDLHADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSFRLGARFEF
Ga0207647_102192722	3300025904	Corn Rhizosphere	HVDYPWVINDRAKVSFIADFFNVTNNRRVRVPDQFRQLDLGANNPDFLQPSIVTLTSGFHLPFSMRLGMRFEF
Ga0207645_108543831	3300025907	Miscanthus Rhizosphere	SQLDLHADYPWVINERARISFIADFFNVTNNRRLRLPDQFRQLDLGADNPDFLQPSTINLTSGFHLPFSVRLGARFEF
Ga0207645_111311482	3300025907	Miscanthus Rhizosphere	RAKISFIADFFNVTNNRRVRLPDQFRQLDLGANNPDFLQPSIVTLTSGFHLPFSMRLGMRFEF
Ga0207643_106621112	3300025908	Miscanthus Rhizosphere	HADYPWVINERARVSFVADFFNVTNSRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF
Ga0207652_118294022	3300025921	Corn Rhizosphere	RVSFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSIITLTSGFHLPFSMRLGARYE
Ga0207690_103931052	3300025932	Corn Rhizosphere	VINERAKISFIADFFNVTNNRRVRLPDQFRQLDLGANNPDFLQPSIVTLTSGFHLPFSMRLGMRFEF
Ga0207691_114915462	3300025940	Miscanthus Rhizosphere	ISFIADFFNVTNNRRLRLPDQFRQLDLGEPNPDFLQPSIISLTSGYHLPFSMRLGARYEF
Ga0207711_120307081	3300025941	Switchgrass Rhizosphere	INEHERVSLIADFFNVTNNRRLRLPDQFLQLDNGVNNPDFLQPSTINLTSAFHLPFSMRLGARFEF
Ga0207679_116512402	3300025945	Corn Rhizosphere	QRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSVINLTSGFHLPFSMRLGARWEF
Ga0207667_119548622	3300025949	Corn Rhizosphere	ADYPWVINDRAKISFIADFFNVTNNRRLRLPDQFRQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF
Ga0207651_121557272	3300025960	Switchgrass Rhizosphere	PFFNQLDLHADYPWVLNDRMKVSFIADFFNVTNNRKLRLPDQFRQLDLGENNPDFLQPSIISLTSGFHLPFSVRLGARFEF
Ga0207640_101715263	3300025981	Corn Rhizosphere	TQLDLHADVPFSINEHQRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF
Ga0207703_120932671	3300026035	Switchgrass Rhizosphere	TQLDLHADYPWVINERAKVSFIADFFNVTNNRRLRLPDMFRQLDLGENNPDFLQPSIINLTSGFHLPFSVRLGARFEF
Ga0207708_119969372	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	NIDERKRIIFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGYHLPFSMRLGARFEF
Ga0207676_118263591	3300026095	Switchgrass Rhizosphere	YSQLDLHADVPFTINDRSRVSFIADFFNVTNNRRLRLPDQFRQLDLQANNPDFLQPSTINLTSGFHLPFSLRLGARFEF
Ga0207698_103756052	3300026142	Corn Rhizosphere	PFFSQLDLHADVPFNINERQRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF
Ga0207698_111315571	3300026142	Corn Rhizosphere	DLHADVPFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF
Ga0209438_11463471	3300026285	Grasslands Soil	RGQLGRTKFYTQLDLHADYPWVINERARVSFIADFFNVTNNRRVRLPDQFLQLDPGVNNPDFLQPSILTLTSGFHLPFYTRLGVRFEF
Ga0268264_108663152	3300028381	Switchgrass Rhizosphere	PFNIDERKRISFIADFFNVTNNRRLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF
Ga0307468_1013071662	3300031740	Hardwood Forest Soil	MKLNFIADFFNVTNSRKVLLPDQFSQLDLGAVNPDFLQPQINLTTLSQGFRLPFNMRLGMWFEF
Ga0310810_111847172	3300033412	Soil	PFFSQLDLHADYPWVINERARISFIADFFNVTNNRRLRLPDQFKQLDLGANNPDFLQPSIINLTSGFHLPFSMRLGARFEF
Ga0310810_114904331	3300033412	Soil	GRTPFFNQLDLHADYPWVINDRAKISFIADFFNVTNNRKLRLPDQFRQLDLGENNPDFLQPSIINLTSGFHLPFSMRLGARFEF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086914

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences