Metagenome Family F086805

Basic Information
Family ID	F086805
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	MRELSKRGNLVAGIAIGLLVAGLIWLSGNLWYVEGEGYCIGTLAQCFH
Number of Associated Samples	78
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	82.73 %
% of genes near scaffold ends (potentially truncated)	19.09 %
% of genes from short scaffolds (< 2000 bps)	62.73 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Predicted Viral (42.727 % of family members)
NCBI Taxonomy ID	10239 (predicted)
Taxonomy	All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (65.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (52.727 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1Draft_103749278 2MLSBCLC_101421685 3Ga0031658_11046871 4Ga0065166_100374325 5Ga0066178_100619111 6Ga0066179_101352171 7Ga0065861_10158783 8Ga0069718_139097002 9Ga0069718_145176513 10Ga0068876_1000595513 11Ga0068876_100590715 12Ga0068876_105382782 13Ga0068876_106361611 14Ga0049085_100743233 15Ga0079957_10617714 16Ga0075465_101555102 17Ga0075464_101306195 18Ga0075464_102531082 19Ga0102861_10129942 20Ga0105747_10314695 21Ga0105747_10599754 22Ga0114340_10167353 23Ga0114340_10378007 24Ga0114346_10318521 25Ga0114363_11902953 26Ga0114876_10078085 27Ga0114876_100782115 28Ga0114876_101551214 29Ga0114876_10221638 30Ga0114880_102759011 31Ga0114880_10419783 32Ga0114880_10624514 33Ga0114973_100144477 34Ga0114973_101893793 35Ga0114980_104112973 36Ga0114968_100665683 37Ga0105104_109388031 38Ga0105097_101862924 39Ga0114974_1003036213 40Ga0133913_105381214 41Ga0138308_1425355 42Ga0119955_101356111 43Ga0153799_10895752 44Ga0164293_100099095 45Ga0164293_101153173 46Ga0164293_103245313 47Ga0164292_109801071 48Ga0181350_10721403 49Ga0181365_10390656 50Ga0181365_10784821 51Ga0181358_10565103 52Ga0181357_10505988 53Ga0181348_10369823 54Ga0181355_10236422 55Ga0181359_10185394 56Ga0207193_18029781 57Ga0211735_114050561 58Ga0194048_100382524 59Ga0181353_10788682 60Ga0181354_11083681 61Ga0214917_104224783 62Ga0209296_13592412 63Ga0209088_100724412 64Ga0209972_100634065 65Ga0209972_102036512 66Ga0209107_102891851 67Ga0209353_102330011 68Ga0209229_101156832 69Ga0209990_100327118 70Ga0209400_10305276 71Ga0247723_10084002 72Ga0247723_10097863 73Ga0247723_10100172 74Ga0247723_10117743 75Ga0247723_10215254 76Ga0304730_11797111 77Ga0247843_11669692 78Ga0315899_115189262 79Ga0315900_106720491 80Ga0315909_1000909724 81Ga0315909_104808332 82Ga0315904_100620174 83Ga0315904_105370882 84Ga0315901_103727812 85Ga0315901_111880522 86Ga0315903_103222613 87Ga0315903_107592442 88Ga0334978_0552377_73_234 89Ga0334982_0469821_3_170 90Ga0334994_0232440_714_872 91Ga0334979_0010173_2322_2465 92Ga0334979_0033717_1245_1403 93Ga0334979_0047025_1059_1220 94Ga0334979_0206166_120_278 95Ga0334979_0421490_579_734 96Ga0334986_0275535_649_807 97Ga0335002_0126570_1292_1435 98Ga0335005_0001540_1948_2112 99Ga0334995_0046353_2059_2202 100Ga0335010_0178526_935_1093 101Ga0335010_0535550_301_447 102Ga0335012_0074934_1038_1184 103Ga0335027_0128748_1217_1360 104Ga0335027_0675573_16_162 105Ga0335031_0038203_1520_1666 106Ga0335036_0423886_626_769 107Ga0335060_0096177_894_1052 108Ga0335013_0225579_187_345 109Ga0335013_0483982_234_395 110Ga0335048_0330188_633_779
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1Draft_103749278 2MLSBCLC_101421685 3Ga0031658_11046871 4Ga0065166_100374325 5Ga0066178_100619111 6Ga0069718_139097002 7Ga0068876_1000595513 8Ga0068876_106361611 9Ga0049085_100743233 10Ga0079957_10617714 11Ga0105747_10314695 12Ga0105747_10599754 13Ga0114346_10318521 14Ga0181350_10721403 15Ga0181365_10784821 16Ga0181357_10505988 17Ga0181355_10236422 18Ga0247723_10084002 19Ga0304730_11797111 20Ga0315901_111880522
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0114973_100144477 2Draft_103749278 3Ga0031658_11046871 4Ga0066178_100619111 5Ga0065861_10158783 6Ga0069718_139097002 7Ga0069718_145176513 8Ga0068876_1000595513 9Ga0049085_100743233 10Ga0079957_10617714 11Ga0075464_101306195 12Ga0075464_102531082 13Ga0105747_10599754 14Ga0114340_10378007 15Ga0114346_10318521 16Ga0114880_10419783 17Ga0114973_101893793 18Ga0105097_101862924 19Ga0133913_105381214 20Ga0119955_101356111 21Ga0164293_101153173 22Ga0181365_10784821 23Ga0181355_10236422 24Ga0209972_100634065 25Ga0209229_101156832 26Ga0209990_100327118 27Ga0247723_10097863 28Ga0247843_11669692 29Ga0315899_115189262 30Ga0315909_104808332 31Ga0315904_100620174 32Ga0315904_105370882 33Ga0315901_111880522 34Ga0315903_103222613 35Ga0334978_0552377_73_234 36Ga0334986_0275535_649_807 37Ga0335031_0038203_1520_1666 38Ga0335013_0225579_187_345 39Ga0335013_0483982_234_395 40Ga0335048_0330188_633_779
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.79% β-sheet: 10.53% Coil/Unstructured: 48.68%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02767	DNA_pol3_beta_2	33.64
PF04545	Sigma70_r4	1.82
PF07659	DUF1599	0.91
PF00145	DNA_methylase	0.91
PF07275	ArdA	0.91
PF08281	Sigma70_r4_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	33.64
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.91
COG4734	Antirestriction protein ArdA	Defense mechanisms [V]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	6.36 %
Unclassified	root	N/A	32.73 %
Viruses	superkingdom	All Organisms → Viruses	60.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.36 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	17.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.73 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	17.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.73 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.73 %
Unclassified	root	N/A	32.73 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	17.27 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.73 %
Unclassified	root	N/A	32.73 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	10.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.73 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.91 %
Unclassified	root	N/A	32.73 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.82 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	3.64 %

Name	Rank	Taxonomy	Distribution
actinobacterium acIB-AMD-7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → actinobacterium acIB-AMD-7	1.82 %
Caudoviricetes sp.	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	3.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	42.73 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.91 %
Unclassified	root	N/A	32.73 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10.91 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300028569\|Ga0247843_1166969	Not Available	881	Open in IMG/M
3300000558\|Draft_10374927	All Organisms → Viruses → Predicted Viral	2814	Open in IMG/M
3300002220\|MLSBCLC_10142168	All Organisms → Viruses → Predicted Viral	3775	Open in IMG/M
3300003860\|Ga0031658_1104687	Not Available	515	Open in IMG/M
3300004112\|Ga0065166_10037432	All Organisms → Viruses → Predicted Viral	1548	Open in IMG/M
3300004124\|Ga0066178_10061911	Not Available	969	Open in IMG/M
3300004126\|Ga0066179_10135217	Not Available	658	Open in IMG/M
3300004448\|Ga0065861_1015878	All Organisms → cellular organisms → Bacteria	2673	Open in IMG/M
3300004481\|Ga0069718_13909700	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	655	Open in IMG/M
3300004481\|Ga0069718_14517651	All Organisms → Viruses → Predicted Viral	2024	Open in IMG/M

Showing 1 to 10 of 110 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.82%
Environmental	Environmental	98.18%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.64%
Terrestrial	Environmental → Terrestrial	4.55%
Wastewater	Engineered → Wastewater	1.82%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.55%
Freshwater	Environmental → Aquatic → Freshwater	87.27%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	1.82%
Marine	Environmental → Aquatic → Marine	6.36%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	5.45%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.91%
Lake	Environmental → Aquatic → Freshwater → Lake	51.82%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.73%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	9.09%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.55%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.91%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	50.91%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	9.09%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.45%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.64%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	1.82%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.91%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.73%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	4.55%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.91%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	26.36%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	9.09%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.73%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.91%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.09%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.09%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	6.36%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.91%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.91%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.82%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	3.64%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	1.82%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.91%
Lake Chemocline	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline	0.91%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.82%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000558	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300002220	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004124	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2)	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M

Showing 1 to 10 of 78 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Draft_103749278	3300000558	Hydrocarbon Resource Environments	VRELSKRGNLVAGIAIGLLIAGIVWVSGNLWYVPGEGYCPGSMVECYGKEFTR*
MLSBCLC_101421685	3300002220	Hydrocarbon Resource Environments	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLKCM*
Ga0031658_11046871	3300003860	Freshwater Lake Sediment	VKDLSKLGNLLLGVVIGLGLALLWYISGHLWYVEGEGYCLGTLAQCFH*
Ga0065166_100374325	3300004112	Freshwater Lake	MRELSKRGNLVAGIAIGLLIAGLFWLSGNVWYTGDGYCIGTLASCFH*
Ga0066178_100619111	3300004124	Freshwater Lake	IDNGYQEKGVNVMNNLTPRGWLVLGIALGLALAGLWYISGHLWYVEGEGYCLGTLAQCFH
Ga0066179_101352171	3300004126	Freshwater Lake	VNVMNNLTPRGWLVLGIALGLALAGLWYISGHLWYVEGEGYCLGTLAQCFH*
Ga0065861_10158783	3300004448	Marine	MRELSKRGNLVAGIAIGLLIAGLIWVSGHVWFTGDGYCIGTLASCFH*
Ga0069718_139097002	3300004481	Sediment	MRYLTKRGYLVAGIAIGLLIAGLIWLSGNLWYVPTDTGGHYCFDTMANCYADSFH*
Ga0069718_145176513	3300004481	Sediment	MRELSKRGNLVAGIAIGLLVAALIWISGNLWYVPGKGYCPGSMSECYAEEFTR*
Ga0068876_1000595513	3300005527	Freshwater Lake	MRDLNKRGHLVAGILIGLALAGLIWFSGHVWYVPDTGYCIGSMSECYK*
Ga0068876_100590715	3300005527	Freshwater Lake	MRELSKRGNLVAGIAIGLLIAGIIWLSGNLWYVEGKGYCRGSMVECYK*
Ga0068876_105382782	3300005527	Freshwater Lake	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCIGTMLECLGKEFTR*
Ga0068876_106361611	3300005527	Freshwater Lake	MRELSKRGNLVAGIAIGLIIAGLIWVSGNVWYTGTGY
Ga0049085_100743233	3300005583	Freshwater Lentic	MSNLTPRGNLVAGLALGLALAGLIWVSGNLWYVEGEGYCVGSLVKCFH*
Ga0079957_10617714	3300005805	Lake	MRDLSKRGNLVLGVVIGLAIAGLIWVSGHVWYVPGEGYCIGTMLECYGPDFH*
Ga0075465_101555102	3300006037	Aqueous	MRELSKRGNLVLGVVIGLLIAGLIWVSGHVWYVPGEGYCIGTMLECYGPDFH*
Ga0075464_101306195	3300006805	Aqueous	MRELSKRGNLVAGVLIGLLIAGLIWVSANLWYVEGEGYCLGTLAQCFH*
Ga0075464_102531082	3300006805	Aqueous	MRELSKRGNLVLGVVIGLLIAGLIWVSANLWYTGDGYCIGTLVSCFH*
Ga0102861_10129942	3300007544	Estuarine	MRELSKLGNLVAGIALGLAIAALWYISGHLWYVEGEGYCIGTLAQCFH*
Ga0105747_10314695	3300007974	Estuary Water	SKRGNLVLGVAIGLLIAGLIWVSANIWYVEGEGYCIGTLAQCFH*
Ga0105747_10599754	3300007974	Estuary Water	MNNLTPRGWLVLGIALGLAIAGLWWVSGHIWYVEGEGYCIGTLAQCF
Ga0114340_10167353	3300008107	Freshwater, Plankton	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGGICLGSMLKCM*
Ga0114340_10378007	3300008107	Freshwater, Plankton	VRELSKRGNLVAGIVIGLIIAGLVWVSGNVWITEEGRICLGSMLECM*
Ga0114346_10318521	3300008113	Freshwater, Plankton	GGFRVMRELSKRGNLVAGIAIGLLIAGLIWVSGNLWYTESGYCRGSLLECDKTFTR*
Ga0114363_11902953	3300008266	Freshwater, Plankton	MRELSKRGNLVAGIAIGLLVAGLIWFSGNVWYVPGEGYCIGTM
Ga0114876_10078085	3300008448	Freshwater Lake	MRELSKRGNLVAGIAIGLIIAGLIWVSGNVWYTGTGYCRGSLIECDKEFTR*
Ga0114876_100782115	3300008448	Freshwater Lake	MRELSKRGNLVAGIAIGLLIAGLIWVSGNLWYTESGYCRGSLLECDKTFTR*
Ga0114876_101551214	3300008448	Freshwater Lake	MRELSKRGNLVAGIAIGLLVAGLIWVSGHVWYVPGEGYCIGTMLECYGPDFH*
Ga0114876_10221638	3300008448	Freshwater Lake	MRELSKRGNLIAGILIGLAIALLWYISGHLWYVEGEGYCLGTLAQCFH*
Ga0114880_102759011	3300008450	Freshwater Lake	MRELSKRGNLVAGIAIGLALAGIVWISGNLWYVPETGYCIGSMVECYK*
Ga0114880_10419783	3300008450	Freshwater Lake	MRELSKRGNLVAGIAIGLLIAGLFWLSGNVWYVPGEGYCIGTMASCFH*
Ga0114880_10624514	3300008450	Freshwater Lake	VRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLKCM*
Ga0114973_100144477	3300009068	Freshwater Lake	MRELSKRGNLVAGIAIGLLVAGLIWLSGNLWYVEGEGYCIGTLAQCFH*
Ga0114973_101893793	3300009068	Freshwater Lake	MRELSKRGNLVLGVVIGLLIAGLIWLSGSLWYVEGEGYCIGTLAQCFH*
Ga0114980_104112973	3300009152	Freshwater Lake	MRELSKRGNLVAGIAIGLLVAGLIWLSGHLWYVEGEGYCIGTLAQCFH*
Ga0114968_100665683	3300009155	Freshwater Lake	MNNLTPRGWLVLGIALGLALAGLWYVSGHLWYVEGEGYCLGTMAQCFH*
Ga0105104_109388031	3300009168	Freshwater Sediment	MRELSKRGNLVAGIAIGLIVAGLVWVSGNVWITEEGRICLGSMLKCM*
Ga0105097_101862924	3300009169	Freshwater Sediment	VKELSKRGNLVAGVAIGLIVAGLVWVSGNVWVTEEGRICRGSMVECM*
Ga0114974_1003036213	3300009183	Freshwater Lake	MRELSKRGNLVAGIVIGLLIAGLIWVSGHVWYTGDGYCIGTLVSCFH*
Ga0133913_105381214	3300010885	Freshwater Lake	MSNLTPRGYLVAGIALGLALAGLIWLSSSLWWTGEGYCIGSLVKCFH*
Ga0138308_1425355	3300010965	Lake Chemocline	MRELSKRGNLVAGIAIGLLIAGLIWVSGHVWYVPGEGYCIGTMLECYGPDFH*
Ga0119955_101356111	3300012006	Freshwater	MKDLSKRGNLVLGVVIGLIIAGIWYISGHLWYVEGEGYCLGTMAQCFH*
Ga0153799_10895752	3300012012	Freshwater	NEGDMKDLSKRGNLVLGVVIGLIIAGIWYISGHLWYVEGEGYCLGTLAQCFH*
Ga0164293_100099095	3300013004	Freshwater	VRELSKRGNLVAGIAIGLLIAGLVWISGNVWITEEGRICLGSMLKCM*
Ga0164293_101153173	3300013004	Freshwater	MRELSKRGNLVAGIAIGLLIAGLLWLSGHVWYVPGEGYCPGSMVECYGEEFTR*
Ga0164293_103245313	3300013004	Freshwater	MRELSKRGNLVVGIAIGLLAAGLIWVSGHVWYVPGEGYCIGTILECYGPDFH*
Ga0164292_109801071	3300013005	Freshwater	MNNLTPRGWLVLGIAIGLAIAGLWWLSGHIWYIEGEGYCIGTLLECDPAAFTR*
Ga0181350_10721403	3300017716	Freshwater Lake	MRELSKRGNLVLGVVIGLLIAGLIWLSGNLWYVEGEGYCIGT
Ga0181365_10390656	3300017736	Freshwater Lake	MRELSKRGNLVLGVVIGLLIAGLIWLSGNLWYVEGEGYCIGTLAQCFH
Ga0181365_10784821	3300017736	Freshwater Lake	MRELSKLGNLVAGIALGLAIAALWYISGHLWYVEGEGYCIGTLVSCF
Ga0181358_10565103	3300017774	Freshwater Lake	MRELSKRGNLVAGIVIGLLVAGLIWLSGSLWYVEGEGYCIGTLAHCFH
Ga0181357_10505988	3300017777	Freshwater Lake	GVSVRELSKRGNLVAGILIGLVIAGLWYISGHLWYVEGEGYCLGTLAQCFH
Ga0181348_10369823	3300017784	Freshwater Lake	MRELSKRGNLVAGIAIGLLVAGLIWLSGSLWYVEGEGYCIGTLAHCFH
Ga0181355_10236422	3300017785	Freshwater Lake	MMRELSKRRNLVLGVMIGLALAGIVWLSGNLWYVPETGYCIGSMVECYK
Ga0181359_10185394	3300019784	Freshwater Lake	MRELSKRGNLVAGIAIGLVIAGLIWVSGNVWWTGTGYCIGTLASCFH
Ga0207193_18029781	3300020048	Freshwater Lake Sediment	GNLVLGVVIGLLIAGLIWVSANLWYVEGEGYCIGTLAQCFH
Ga0211735_114050561	3300020162	Freshwater	MRELSKRGNLVAGIAIGLLVAGLIWVSGHVWYVPGEGYCIGTMLECYGPDFH
Ga0194048_100382524	3300021519	Anoxic Zone Freshwater	MRELSKLGNLLLGVVIGLALALLWYISGHLWYVEGEGYCLGTLAQCFH
Ga0181353_10788682	3300022179	Freshwater Lake	MRELSKRGNLVAGIAIGLLIAGLFWLSGNVWYTGDGYCIGTLASCFH
Ga0181354_11083681	3300022190	Freshwater Lake	MRELSKRGNLVLGVVIGLLIAGLIWLSGNLWYVEGEGYC
Ga0214917_104224783	3300022752	Freshwater	MRELSKRGNLVAGIAIGLLVAGLIWLSGNLWYVEGEGYCLGTLAQCFH
Ga0209296_13592412	3300027759	Freshwater Lake	ELSKIGNLVAGIVIGLLIAGLIWVSGHVWYTGDGYCIGTLVSCFH
Ga0209088_100724412	3300027763	Freshwater Lake	MRELSKRGNLVAGIAIGLLVAGLIWLSGHLWYVEGEGYCIGTLAQCFH
Ga0209972_100634065	3300027793	Freshwater Lake	MRELSKRGNLVAGIAIGLLIAGIIWLSGNLWYVEGKGYCRGSMVECYK
Ga0209972_102036512	3300027793	Freshwater Lake	MRDLNKRGHLVAGILIGLALAGLIWFSGHVWYVPDTGYCIGSMSECYK
Ga0209107_102891851	3300027797	Freshwater And Sediment	MRELSKRGNLVAGIAIGLLVAGLIWLSGNLWYVEGEGYCIGTLAQCFH
Ga0209353_102330011	3300027798	Freshwater Lake	VRELSKRGNLVAGIAIGLLIAGLFWLSGNVWYTGEGYCIGTMASC
Ga0209229_101156832	3300027805	Freshwater And Sediment	MNNLTPRGWLVLGIAIGLAIAGLWWVSAYVWYVPGEGYCIGTILECYGPDFH
Ga0209990_100327118	3300027816	Freshwater Lake	MRELSKRGNLIAGILIGLAIALLWYISGHLWYVEGEGYCLGTLAQCFH
Ga0209400_10305276	3300027963	Freshwater Lake	MNNLTPRGWLVLGIALGLALAGLWYVSGHLWYVEGEGYCLGTMAQCFH
Ga0247723_10084002	3300028025	Deep Subsurface Sediment	MRELSKRGNLVIGIAIGLLIAVIYYLSGHLWWTGEEWCLDTMANCMDKAFTR
Ga0247723_10097863	3300028025	Deep Subsurface Sediment	MRELSKRGNLVAGIVIGLLIAGLFWLSGHVWYTGDGYCIGTLVSCFH
Ga0247723_10100172	3300028025	Deep Subsurface Sediment	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCIGTMASCFH
Ga0247723_10117743	3300028025	Deep Subsurface Sediment	MRSLSKRGNLVAGIAIGLALAGIVWLSGNLWYVPETGYCIGSMVECYK
Ga0247723_10215254	3300028025	Deep Subsurface Sediment	VRELSKRGNLVAGIVIGLIIAGLVWVSGNVWITEEGRICLGSMLECM
Ga0304730_11797111	3300028394	Freshwater Lake	LVLGIALGLALAGLWYVSGHLWYVEGEGYCLGTMAQCFH
(restricted) Ga0247843_11669692	3300028569	Freshwater	MRDLSKRGNLVAGIAIGLLIAGLIWVSGNLWYVPGEGYCIGTMLECYGKEFTR
Ga0315899_115189262	3300031784	Freshwater	MRELSKRGNLVAGIAIGLIIAGLIWVSGNVWYTGTGYCRGSLIECDKEFTR
Ga0315900_106720491	3300031787	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTG
Ga0315909_1000909724	3300031857	Freshwater	VRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLKCM
Ga0315909_104808332	3300031857	Freshwater	MKELSKRGNLVAGIAIGLLIAGLIWLSGNLWYVPGEGYCPGSMSECYGKEFTR
Ga0315904_100620174	3300031951	Freshwater	MRELSKRGNLVAGIAIGLALAGIVWISGNLWYVPETGYCIGSMVECYK
Ga0315904_105370882	3300031951	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCIGTMLECLGKEFTR
Ga0315901_103727812	3300031963	Freshwater	MRELSKRGNLVAGIAIGLLVAGLIWFSGNVWYVPGEGYCIGTMASCFH
Ga0315901_111880522	3300031963	Freshwater	MRELSKRGNLVLGVAIGLALAGIFWLSGNLWWVDSGWCIG
Ga0315903_103222613	3300032116	Freshwater	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGGICLGSMLKCM
Ga0315903_107592442	3300032116	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCIGTML
Ga0334978_0552377_73_234	3300033979	Freshwater	MSGLSKRGNLVAGIAIGLLIAGLFWLSGHVWYVPGEGYCIGTMLECYGEEFVR
Ga0334982_0469821_3_170	3300033981	Freshwater	VALMRELSKRGNLVAGIAIGLLIAGLFWLSGNLWWTGEGYCPGSMSECLGEEFTR
Ga0334994_0232440_714_872	3300033993	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGEGYCPGSMSECLGKEFTR
Ga0334979_0010173_2322_2465	3300033996	Freshwater	VRELSKRGNLVAGIAIGLLIAGLVWISGNVWITEEGRICLGSMLKCM
Ga0334979_0033717_1245_1403	3300033996	Freshwater	MRELSKRGNLVVGIAIGLLAAGLIWVSGHVWYVPGEGYCIGTILECYGPDFH
Ga0334979_0047025_1059_1220	3300033996	Freshwater	MRELSKRGNLVAGIAIGLLIAGLLWLSGHVWYVPGEGYCPGSMVECYGEEFTR
Ga0334979_0206166_120_278	3300033996	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGEGYCPGSMSECLGEEFTR
Ga0334979_0421490_579_734	3300033996	Freshwater	EGDMKDLSKRGNLVLGVVIGLIIAGIWYISGHLWYVEGEGYCLGTLAQCFH
Ga0334986_0275535_649_807	3300034012	Freshwater	MRELSKRGNLVAGIAIGLLIAVIYYLSGHLWWTGEEWCLDTMANCMDKSFTR
Ga0335002_0126570_1292_1435	3300034020	Freshwater	VRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLECM
Ga0335005_0001540_1948_2112	3300034022	Freshwater	MMNNLTPRGWLVLGIAIGLAIAGLWWVSGHIWYIEGEGYCIGTLLECDPAAFTR
Ga0334995_0046353_2059_2202	3300034062	Freshwater	VRELSKRGNLVAGIAIGLLIAGLVWISGNVWITEEGRICLGSMLECM
Ga0335010_0178526_935_1093	3300034092	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCPGSMSECLGKEFTR
Ga0335010_0535550_301_447	3300034092	Freshwater	MRELNKRGHLVAGILIGLALAGLVWISGHVWYVPETGYCIGSMSECYK
Ga0335012_0074934_1038_1184	3300034093	Freshwater	MKDLSKRGNLVLGVVIGLGLALLWYISGHLWYVEGEGYCLGTLAQCFH
Ga0335027_0128748_1217_1360	3300034101	Freshwater	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGGVCLGSMLKCM
Ga0335027_0675573_16_162	3300034101	Freshwater	MRELSKRGNLVAGIVIGLALAGIVWISGHVWYVPETGYCIGSMSECYK
Ga0335031_0038203_1520_1666	3300034104	Freshwater	MRELSKRGNLVAGIVIGLALAGIVWISGHVWYVEGTGYCIGSMVECYK
Ga0335036_0423886_626_769	3300034106	Freshwater	MRELSKRGNLVAGIAIGLLIAGLVWVSGNVWITEEGRICLGSMLECM
Ga0335060_0096177_894_1052	3300034122	Freshwater	MRELTKRGNLVAGIAIGLLIAGLIWLSGNLWWTGTGYCPGSMSECLGEEFTR
Ga0335013_0225579_187_345	3300034284	Freshwater	MRELSKRGNLVAGIAIGLLVAGLIWVSGHVWYVPGEGYCIGTILECYGPDFH
Ga0335013_0483982_234_395	3300034284	Freshwater	MNNLTPRGWLVLGIAIGLAIAGLWWLSGHIWYIEGEGYCIGTLLECDPAAFTR
Ga0335048_0330188_633_779	3300034356	Freshwater	MKELSKRGNLVAGIAIGLLIAGLIWVSGHVWYVPGEGYCIGTLTSCFHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters