Metagenome / Metatranscriptome Family F086793

Basic Information
Family ID	F086793
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	62 residues
Representative Sequence	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Number of Associated Samples	96
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.09 %
% of genes near scaffold ends (potentially truncated)	26.36 %
% of genes from short scaffolds (< 2000 bps)	76.36 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (58.182 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (55.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (61.818 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1LV_Brine_h2_0102DRAFT_10007934 2B570J14230_100101556 3RCM39_10305601 4RCM26_11458022 5metazooDRAFT_13639242 6B570J29032_1088888022 7B570J40625_1000903642 8JGI25908J49247_100111416 9JGI25909J50240_10544392 10Ga0066599_1007399632 11Ga0066222_12006832 12Ga0069718_151755552 13Ga0069718_158030752 14Ga0007792_101353481 15Ga0049081_101266602 16Ga0079957_100124531 17Ga0079957_10285106 18Ga0075464_109298262 19Ga0070747_11783773 20Ga0114350_11303672 21Ga0114841_100067635 22Ga0114876_10173513 23Ga0114876_10796712 24Ga0114880_10079926 25Ga0105103_106327282 26Ga0105091_103362462 27Ga0114968_100047874 28Ga0114978_102609752 29Ga0114970_103082752 30Ga0105102_106508182 31Ga0114979_105756282 32Ga0114974_100284292 33Ga0129333_103279802 34Ga0133913_107221675 35Ga0133913_111460012 36Ga0133913_112209412 37Ga0136709_10613082 38Ga0153800_10255782 39Ga0153805_10257582 40Ga0164293_101050052 41Ga0164293_102968532 42Ga0164292_100512932 43Ga0164292_101100422 44Ga0177922_103935002 45Ga0177922_105250822 46Ga0119954_10713341 47Ga0181338_10003914 48Ga0181339_10292852 49Ga0181352_11090832 50Ga0181344_10309853 51Ga0181344_10786252 52Ga0181344_10921782 53Ga0181344_11681982 54Ga0181343_11623682 55Ga0181349_12430012 56Ga0181355_11306422 57Ga0181553_101254832 58Ga0181563_100799282 59Ga0181361_1063772 60Ga0181359_10411003 61Ga0211729_113487383 62Ga0208050_10313412 63Ga0208598_10379712 64Ga0208229_10380891 65Ga0208053_10032146 66Ga0213920_10297792 67Ga0194048_100886643 68Ga0222715_100216047 69Ga0181353_10199862 70Ga0181353_10537923 71Ga0228702_10480982 72Ga0214917_100561351 73Ga0209414_100042425 74Ga0256312_10848383 75Ga0255246_11391292 76Ga0209615_1092672 77Ga0255125_10460463 78Ga0208975_10572871 79Ga0209492_12081102 80Ga0209190_13477802 81Ga0209593_100392102 82Ga0209593_102196632 83Ga0209296_11190501 84Ga0209134_101210182 85Ga0209134_102698352 86Ga0209246_103853181 87Ga0209253_104596752 88Ga0307376_104974773 89Ga0307375_108154462 90Ga0315291_100346502 91Ga0315293_105300312 92Ga0315288_104533151 93Ga0315290_108922682 94Ga0315909_100597142 95Ga0315901_103407402 96Ga0315274_109559831 97Ga0315906_112755211 98Ga0315905_100865832 99Ga0315268_106929532 100Ga0315273_101977952 101Ga0334989_0296490_126_317 102Ga0334986_0345949_249_440 103Ga0334998_0036498_3349_3507 104Ga0335002_0250297_626_817 105Ga0334990_0561757_61_261 106Ga0335028_0572032_2_178 107Ga0335054_0447200_557_730 108Ga0335056_0485437_407_598 109Ga0335016_0711551_178_369 110Ga0335013_0760517_391_546
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1LV_Brine_h2_0102DRAFT_10007934 2B570J14230_100101556 3RCM39_10305601 4metazooDRAFT_13639242 5JGI25909J50240_10544392 6Ga0069718_151755552 7Ga0133913_107221675 8Ga0153800_10255782 9Ga0164292_100512932 10Ga0181344_11681982 11Ga0256312_10848383 12Ga0255246_11391292 13Ga0334998_0036498_3349_3507
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1LV_Brine_h2_0102DRAFT_10007934 2B570J14230_100101556 3RCM39_10305601 4metazooDRAFT_13639242 5JGI25909J50240_10544392 6Ga0069718_151755552 7Ga0133913_107221675 8Ga0153800_10255782 9Ga0164292_100512932 10Ga0181344_11681982 11Ga0256312_10848383 12Ga0255246_11391292 13Ga0334998_0036498_3349_3507
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 90.48% β-sheet: 0.00% Coil/Unstructured: 9.52%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF10124	Mu-like_gpT	4.55
PF03237	Terminase_6N	2.73
PF00166	Cpn10	1.82
PF07460	NUMOD3	0.91
PF03592	Terminase_2	0.91
PF01726	LexA_DNA_bind	0.91
PF04252	RNA_Me_trans	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG2428	Rps3 or RNA methylase involved in ribosome biogenesis, SPOUT family	Translation, ribosomal structure and biogenesis [J]	0.91
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.91

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	41.82 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	26.36 %
Unclassified	root	N/A	58.18 %
Viruses	superkingdom	All Organisms → Viruses	15.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.36 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	25.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	23.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	23.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	23.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Unclassified	root	N/A	58.18 %

Name	Rank	Taxonomy	Distribution
Acinetobacter baylyi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	23.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	14.55 %
Unclassified	root	N/A	58.18 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000405\|LV_Brine_h2_0102DRAFT_1000793	Not Available	10064	Open in IMG/M
3300001282\|B570J14230_10010155	All Organisms → Viruses → Predicted Viral	3607	Open in IMG/M
3300001837\|RCM39_1030560	All Organisms → Viruses → Predicted Viral	1297	Open in IMG/M
3300001849\|RCM26_1145802	Not Available	1057	Open in IMG/M
3300002212\|metazooDRAFT_1363924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	615	Open in IMG/M
3300002408\|B570J29032_108888802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	533	Open in IMG/M
3300002835\|B570J40625_100090364	All Organisms → Viruses → Predicted Viral	3867	Open in IMG/M
3300003277\|JGI25908J49247_10011141	All Organisms → Viruses → Predicted Viral	2790	Open in IMG/M
3300003393\|JGI25909J50240_1054439	Not Available	827	Open in IMG/M
3300004282\|Ga0066599_100739963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	682	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.18%
Terrestrial	Environmental → Terrestrial	1.82%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	90.00%
Marine	Environmental → Aquatic → Marine	6.36%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.82%
Soil	Environmental → Terrestrial → Soil	1.82%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	1.82%
Coastal	Environmental → Aquatic → Marine → Coastal	3.64%
Creek	Environmental → Aquatic → Freshwater → Creek	1.82%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.82%
Ice	Environmental → Aquatic → Freshwater → Ice	0.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.82%
Lake	Environmental → Aquatic → Freshwater → Lake	40.91%
Lentic	Environmental → Aquatic → Freshwater → Lentic	28.18%
Lotic	Environmental → Aquatic → Freshwater → Lotic	1.82%
Pond	Environmental → Aquatic → Freshwater → Pond	0.91%
River	Environmental → Aquatic → Freshwater → River	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	6.36%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.36%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.91%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	34.55%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.91%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.82%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	13.64%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	5.45%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.55%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.64%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	2.73%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	17.27%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.09%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.73%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.91%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.45%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.91%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.82%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline	1.82%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	1.82%
Lake	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake	0.91%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.91%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	1.82%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.82%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.82%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.91%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000405	Hypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001837	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a	Environmental	Open in IMG/M
3300001849	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b	Environmental	Open in IMG/M
3300002212	Freshwater microbial communities from San Paulo Zoo lake, Brazil - JAN 2013	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LV_Brine_h2_0102DRAFT_10007934	3300000405	Hypersaline	MDRTLEIILDQLRNKRIQISEAVSTGAAKDYAEYRALCGEIRGLSTTEGYILDLAKAMEQSDE*
B570J14230_100101556	3300001282	Freshwater	MEKALSIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLLKHMEQSND*
RCM39_10305601	3300001837	Marine Plankton	LIQQVRDKRQQIVEAVSNNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDD*
RCM26_11458022	3300001849	Marine Plankton	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDD*
metazooDRAFT_13639242	3300002212	Lake	MDKTLEVLLKQVREKRQQIVEAVSNNAAKDYAQYQHLCGEIRGLSMAEGFILDLAKHMESSDE*
B570J29032_1088888022	3300002408	Freshwater	MEKTLEVLLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSMAEGFILDLAKQMEFSDD*
B570J40625_1000903642	3300002835	Freshwater	MEKEITVVLSQIKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKHMEQSDD*
JGI25908J49247_100111416	3300003277	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
JGI25909J50240_10544392	3300003393	Freshwater Lake	MEKTLEIILEQVRRKRDQISSAIVTNGARDYPEYQKLCGEIRGLSLSEGFILDLAKTMEQEDD*
Ga0066599_1007399632	3300004282	Freshwater	MDKAFEILIQQVRDKRHQIVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0066222_12006832	3300004460	Marine	MDKAFEILIQQVRDKRQQIVEAVSSNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0069718_151755552	3300004481	Sediment	MDKVLEVLLKQVRDRREQLILAVSQSAAKDYSEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0069718_158030752	3300004481	Sediment	TMDKAFEILIQQVRDKRHQIVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0007792_101353481	3300004805	Freshwater	FEILIQQVRDKRQQIVEAVSTNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0049081_101266602	3300005581	Freshwater Lentic	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0079957_100124531	3300005805	Lake	MDKTLEVLLEQITEKRQQIVNAVATNAAKDYAEYQRLCGEIRGLSLTEGYILDLLKKMEFSDD*
Ga0079957_10285106	3300005805	Lake	MEKTLEILLEQIRLKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSMAEGFILDLAKQMEFSDD*
Ga0075464_109298262	3300006805	Aqueous	MDKAFEILIQQVRDKRQQIVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMEMSDE*
Ga0070747_11783773	3300007276	Aqueous	RDKRQQVVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0114350_11303672	3300008116	Freshwater, Plankton	MDKTLEVLLKQVREKRTQIVEAVSNNAAKDYAQYQHLCGEIRGLSMAEGFILDLAKHMES
Ga0114841_100067635	3300008259	Freshwater, Plankton	MDKAFEILIQQLRDKRQQVVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0114876_10173513	3300008448	Freshwater Lake	MEKTLEILLEQVRQKRHQIVEAVSTSAAKDYAEYQKLCGEIRGLSMAEGYILDLAKQMEFSDD*
Ga0114876_10796712	3300008448	Freshwater Lake	MDKAFEILIQQVREKRQQIVEAVSTNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0114880_10079926	3300008450	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDFSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0105103_106327282	3300009085	Freshwater Sediment	MEKTLEVLLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSIAEGFILDLAKQMEFSDD*
Ga0105091_103362462	3300009146	Freshwater Sediment	MDKAFEILIQQVREKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0114968_100047874	3300009155	Freshwater Lake	MDKTLEILIQQVRDKRHQVVEAVSNNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSNE*
Ga0114978_102609752	3300009159	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDYPEYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0114970_103082752	3300009163	Freshwater Lake	MDKTLEILIQQVRDKRHQVIEAVSNNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSNE*
Ga0105102_106508182	3300009165	Freshwater Sediment	MDKVLEVLLKQVRERRDQLILAVSQSAAKDFADYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0114979_105756282	3300009180	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0114974_100284292	3300009183	Freshwater Lake	MDKAFEIILQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0129333_103279802	3300010354	Freshwater To Marine Saline Gradient	MDKTLEVLLKQVREKRTQIVEAVSNNAAKDYAQYQHLCGEIRGLSMAEGFILDLAKHMESSDE*
Ga0133913_107221675	3300010885	Freshwater Lake	MSRSIESVLKDIQVKRQQIVEVVATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKHMEQSDD*
Ga0133913_111460012	3300010885	Freshwater Lake	MDKTLEILIQQVRDKRQQIVEAVSSNAAKDYSEYQKLCGEIRGLSIAEGYILDLAKTMELSNE*
Ga0133913_112209412	3300010885	Freshwater Lake	MEKEITVVLSQIKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLLKHMEQSDD*
Ga0136709_10613082	3300011184	Freshwater	MDKVLEVLLKQVRERRDQLILAVSQSAAKDFSEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0153800_10255782	3300011995	Freshwater	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDYSDYQKLCGEIRGLSIAEGFILD
Ga0153805_10257582	3300012013	Surface Ice	MMDKVLEVILSQIRERREQLVLAVSQSAAKDFADYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0164293_101050052	3300013004	Freshwater	MDKVLEVLLKQVRERRDQLIIAVSQSAAKDFAEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0164293_102968532	3300013004	Freshwater	MEKALFIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLLKHMEQSND*
Ga0164292_100512932	3300013005	Freshwater	MEKEITVVLSQIKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKLINNGEYEDL*
Ga0164292_101100422	3300013005	Freshwater	MDKVLEVLLKQVRERRDQLILAVSQSAAKDFAEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0177922_103935002	3300013372	Freshwater	MDKAFEILIQQLRDKRQQVVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAK
Ga0177922_105250822	3300013372	Freshwater	MDKAFEILIQQVRDKRQQIVEAVSSNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMEL
Ga0119954_10713341	3300014819	Freshwater	MDKTLEILIQQVRDKRHQVVEAVSNNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE*
Ga0181338_10003914	3300015050	Freshwater Lake	MDKVLEVLLKQVRERRDQLIIAISQSAAKDFAEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE*
Ga0181339_10292852	3300017700	Freshwater Lake	MDKVLEVLLKQVRERRDQLIIAISQSAAKDFAEYQKLCGEIRGLSTTEGYILDL
Ga0181352_11090832	3300017747	Freshwater Lake	MDKTLEVLLEQVRGKRGQIVEAVSNNAAKDYSEYQKLCGEIRGLSLAEGFILDLAKHMEQSDDE
Ga0181344_10309853	3300017754	Freshwater Lake	MDKAFEILIQQVRDKRHQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0181344_10786252	3300017754	Freshwater Lake	MEKALSIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLLKHMEQ
Ga0181344_10921782	3300017754	Freshwater Lake	MDKALEVLLKQVRERRDQLILAVSQSAAKDFAEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE
Ga0181344_11681982	3300017754	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDEXNRNRHRRRRGI
Ga0181343_11623682	3300017766	Freshwater Lake	MDKVLEVILSQIRERREQLVLAVSQSAAKDFADYQKLCGEIRGLSTTEGYILDLAKLMEQSDE
Ga0181349_12430012	3300017778	Freshwater Lake	MDKAFEILIQQVREKRQQIVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDEXNRNRH
Ga0181355_11306422	3300017785	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSNE
Ga0181553_101254832	3300018416	Salt Marsh	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0181563_100799282	3300018420	Salt Marsh	MIMDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0181361_1063772	3300019783	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0181359_10411003	3300019784	Freshwater Lake	MDKVLEVLLKQVRERRDQLIIAISQSAAKDFAEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE
Ga0211729_113487383	3300020172	Freshwater	MDKAFEILIQQVRDKRQQIVEAVSTNCAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0208050_10313412	3300020498	Freshwater	MEKALSIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLLKHMEQSND
Ga0208598_10379712	3300020568	Freshwater	MEKTLEVLLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSMAEGFILDLAKQMEFSDD
Ga0208229_10380891	3300020569	Freshwater	MEKALSIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLLKHMEQSNDXTRYRKRXGNKSN
Ga0208053_10032146	3300020575	Freshwater	MEKEITVVLSQIKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKHMEQSDD
Ga0213920_10297792	3300021438	Freshwater	MDKAFEILIQQVRDKRQQIVEAVSSNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0194048_100886643	3300021519	Anoxic Zone Freshwater	MEKALSIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLIKHMEQSND
Ga0222715_100216047	3300021960	Estuarine Water	MEKTLEILLEQIRLKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSMAEGFILDLAKQMEFSDD
Ga0181353_10199862	3300022179	Freshwater Lake	MDKAFEILIQQVRDKRQQVVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0181353_10537923	3300022179	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0228702_10480982	3300022748	Freshwater	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDFSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0214917_100561351	3300022752	Freshwater	MEKTLEILLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSMAEGFILDLAKQMEFSDD
Ga0209414_100042425	3300023301	Hypersaline	MDRTLEIILDQLRNKRIQISEAVSTGAAKDYAEYRALCGEIRGLSTTEGYILDLAKAMEQSDE
Ga0256312_10848383	3300024861	Freshwater	EQLKEKRQQLIEAVATNSCRDFAEYQKLCGEIRGLSIAEGFILDLTKLMEQSDD
Ga0255246_11391292	3300024863	Freshwater	MDKTLELVLEQLKEKRQQLIEAVATNSCRDFAEYQKLCGEIRGLSIAEGFILDLTK
Ga0209615_1092672	3300025075	Freshwater	MDKAFEILIQQVRDKRQQVIEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSNE
Ga0255125_10460463	3300027534	Freshwater	LEQLKEKRQQLIEAVATNSCRDFAEYQKLCGEIRGLSIAEGFILDLTKLMEQSDD
Ga0208975_10572871	3300027659	Freshwater Lentic	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTME
Ga0209492_12081102	3300027721	Freshwater Sediment	MEKTLEVLLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSIAEGFILDLAKQMEFSDD
Ga0209190_13477802	3300027736	Freshwater Lake	MDKTLEILIQQVRDKRHQVIEAVSNNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSNE
Ga0209593_100392102	3300027743	Freshwater Sediment	MDKAFEILIQQVREKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0209593_102196632	3300027743	Freshwater Sediment	MEKTLEVLLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSLAEGFILDLAKQMEFSDD
Ga0209296_11190501	3300027759	Freshwater Lake	MDKAFEIILQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKT
Ga0209134_101210182	3300027764	Freshwater Lake	MEKEITVVLSQIKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLLKHMEQSDD
Ga0209134_102698352	3300027764	Freshwater Lake	MDKAFEILIQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSD
Ga0209246_103853181	3300027785	Freshwater Lake	MDKVLEVLLKQVRERRDQLIIAVSQSAAKDFAEYQKLCGEIRGLSTTEGYILDLAKLMEQSDE
Ga0209253_104596752	3300027900	Freshwater Lake Sediment	MDKAFEILIQQVRDKRQQLVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSNE
Ga0307376_104974773	3300031578	Soil	MDKAFEIILQQVRDKRQQIVEAVSNNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0307375_108154462	3300031669	Soil	VRDKRQQIVEAVSTNAAKDYSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0315291_100346502	3300031707	Sediment	MNKAFEILIQQVRDKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0315293_105300312	3300031746	Sediment	MSRSIESVLKDIQGKKQQIVEVVATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKHMEQSDD
Ga0315288_104533151	3300031772	Sediment	MNKAFEILIQQVRDKRQQIVEAVSTNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDEXNRNRHR
Ga0315290_108922682	3300031834	Sediment	MNKAFEILIQQVRDKRQQIVEAVSTNAAKDYSEYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0315909_100597142	3300031857	Freshwater	MEKTLEILLEQVRQKRHQIVEAVSTSAAKDYAEYQKLCGEIRGLSMAEGYILDLAKQMEFSDD
Ga0315901_103407402	3300031963	Freshwater	MEKTLEILLEQVRQKRHQIVEAVSTSAAKDYAEYQKLCGEIRGLSMAEGFILDLAKQMEFSD
Ga0315274_109559831	3300031999	Sediment	MDKAFEILIQQVRDKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFILDLAKSMEF
Ga0315906_112755211	3300032050	Freshwater	FMDKTLEVLLKQVREKRTQIVEAVSNNAAKDYAQYQHLCGEIRGLSMAEGFILDLAKHMESSDE
Ga0315905_100865832	3300032092	Freshwater	MDKAFEILIQQVRDKRQQIVEAVSTNAAKDFSDYQKLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0315268_106929532	3300032173	Sediment	MEKALAIVLDQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFILDLLKHMEQSDD
Ga0315273_101977952	3300032516	Sediment	MNKAFEILIQQVRDKRQQIVEAVSTNAAKDYSEYQKLCGEIRGLSIAEGFIL
Ga0334989_0296490_126_317	3300033984	Freshwater	MSRSIESVLKDIQLKKQQIVEVVATSAAKDYAEYQKLCGEIRGLSIAEGYILDLLKHMEQSDD
Ga0334986_0345949_249_440	3300034012	Freshwater	MEKTLEVLLEQIRQKRQQIVEAVSTNAAKDYAEYQKLCGEIRGLSMAEGFILDRAKQMEFSDD
Ga0334998_0036498_3349_3507	3300034019	Freshwater	IKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKHMEQSDD
Ga0335002_0250297_626_817	3300034020	Freshwater	MEKALFIVLEQIKEKRDQIATAVSTSAAKDYAEYQKLCGEIRGLSIAEGFIYDLLKHMEQSND
Ga0334990_0561757_61_261	3300034068	Freshwater	MEKEITVVLSQIKEKRDQIATAIATSAAKDYAEYQKLCGEIRGLSIAEGYILDLVKLINNGEYEDL
Ga0335028_0572032_2_178	3300034071	Freshwater	EILIQQVREKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFILDLAKTMELSDE
Ga0335054_0447200_557_730	3300034119	Freshwater	MEKALEVLLKQVRDKRDQIVEAVSNSAAKDYADYQKLCGEIRGLSLAEGFILDLAKKM
Ga0335056_0485437_407_598	3300034120	Freshwater	MEKTLEVLLEQIRQKRHQIVEAVSTSAAKDYAEYQKLCGEIRGLSMAEGYILDLAKQMEFSDD
Ga0335016_0711551_178_369	3300034166	Freshwater	MEKTLEVLLEQIRQKRQQIVEAVSNNAAKDYAEYQKLCGEIRGLSIAEGFILDLAKQMEFSDD
Ga0335013_0760517_391_546	3300034284	Freshwater	MDKAFEILIQQVREKRQQIVEAVSTNCAKDYSEYQRLCGEIRGLSIAEGFIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086793

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences