NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F086789

Metagenome Family F086789

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086789
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 54 residues
Representative Sequence PFVPESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK
Number of Associated Samples 98
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.91 %
% of genes from short scaffolds (< 2000 bps) 0.91 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.091 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(10.000 % of family members)
Environment Ontology (ENVO) Unclassified
(38.182 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(58.182 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.68%    β-sheet: 0.00%    Coil/Unstructured: 57.32%
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Variant

5101520253035404550PFVPESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Freshwater Sediment
Wetland Sediment
Freshwater Sediment
Sediment
Hot Spring Sediment
Soil
Groundwater Sediment
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Serpentine Soil
Unplanted Soil
Switchgrass Rhizosphere
Soil
Agricultural Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
6.4%9.1%6.4%3.6%5.5%10.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AP72_2010_repI_A100DRAFT_100830813300000837Forest SoilQLNLVDAKAAQSTPTTAYFDNTFVAELKQSGFLDSLWK*
JGI10216J12902_11901632523300000956SoilAHDPAVPDKVMQAMVQRMAQLNMIDTKAAQTTPVSAYYDNSFVNELKQSGFLNSVWK*
Ga0062590_10204351613300004157SoilETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQSTPVSAYFDNSYVAELKQAGFFDTVWK
Ga0063356_10053245913300004463Arabidopsis Thaliana RhizosphereETFAREPFVPESTMQAMVQRMVQVNMIDAKSAQTTPTNAYFDNSYVAELKQSGFLDNTWK
Ga0062595_10021220823300004479SoilREPFVPESTMQSMVQRMVQVNMIDAKSAQSTPISAYFDNSYVAELKQSGFLDSVWK*
Ga0062592_10104464413300004480SoilNVMQSMVQRMAQLNMIDTKAAQSTPAGAYYDNSFVNEVKSSGFLDSVWK*
Ga0062383_1010919423300004778Wetland SedimentLLRQSYAYVTDNFAKDPAVPENVIQSMVQRMAQLNMIDTKAAQATPIVAYYDNSYVNELKQSGFLDSIWK*
Ga0062381_1036265223300004808Wetland SedimentAKDPTVPDSVIQSMVQRMAQLNMIDAKAAQTTPTSAYYDNSYVNELKQSGFLDGVGK*
Ga0066688_1016542213300005178SoilVPESTIQSMVERMGQLNLIDPKAARSMPTSAYFDNSFVADLKQSGFFDGLWK*
Ga0065707_1028506613300005295Switchgrass RhizosphereSYQYIGETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0070683_10173501613300005329Corn RhizosphereVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0070690_10010061733300005330Switchgrass RhizosphereTMKSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0068868_10035405023300005338Miscanthus RhizosphereREPFVPESTMQSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0070674_10003589853300005356Miscanthus RhizosphereVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0070674_10026063823300005356Miscanthus RhizosphereVREPFVPESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0070694_10191985223300005444Corn, Switchgrass And Miscanthus RhizospherePFVPESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0070663_10041785613300005455Corn RhizospherePFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0070662_10135633623300005457Corn RhizosphereMQSMVQRMVQVNMIDAKSAQSTPVSAYFDNSYVAELKQAGFFDAVWK*
Ga0070695_10006610513300005545Corn, Switchgrass And Miscanthus RhizosphereVQVNMIDAKSAQSLPIDAYFDNSFVAELKQSGFLDAVWK*
Ga0070695_10079233823300005545Corn, Switchgrass And Miscanthus RhizosphereREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0070665_10012063513300005548Switchgrass RhizospherePFVPESTMKSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFIDGIWK*
Ga0068855_10209803823300005563Corn RhizosphereMVQRMVQVNMIDAKSAQTTPTTAYFDNSYVAELKQSGFLDSVWK*
Ga0070664_10023087813300005564Corn RhizosphereMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVAELKQSGFLDGIWK*
Ga0068857_10171559023300005577Corn RhizosphereYAYVSDNFARDPAVPENVMQSMVQRMAQLNMIDTKPAQSTPAGAYYDNSFVNEVKSSGFLDSVWK*
Ga0066691_1049165623300005586SoilIDAKSAQSTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0068866_1132052423300005718Miscanthus RhizosphereTFVREPFVPESTMKSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0068861_10114377423300005719Switchgrass RhizosphereLQRQSYQYIGETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQTTPTTAYFDNSYVAELKQSGFLDSVWK*
Ga0068858_10156121323300005842Switchgrass RhizospherePAVPENVIQSMVQRMAQLNMVDAKGAQSTPTSAYLDNSYVNELKQSGFVDSVWK*
Ga0075026_10101694523300006057WatershedsIQSMVQRMAQLNMIDAKAAQATPTGAYYDNSFVNELKQSGFLDNVWK*
Ga0079220_1053536913300006806Agricultural SoilSFLYVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFIDGIWK*
Ga0075421_10088452623300006845Populus RhizosphereDLQRQSYQYIGETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQSTPISAYFDNSFVAELKQSGFLDTIWK*
Ga0075421_10216651523300006845Populus RhizosphereEPFVPESTVQSMVQRMVQVNMIGGKSAQSIPTSAYFDNSYVAELKQSGFLDNLWK*
Ga0075421_10259513523300006845Populus RhizosphereSTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDNLWK*
Ga0075431_10058834913300006847Populus RhizosphereTFAREPFVPESTMQAMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDNIWK*
Ga0073934_1026907413300006865Hot Spring SedimentSMVQRMVQVNMIDAKSAQSMPVTAYFDNSFVVELKQSGFLDATWR*
Ga0075436_10027869713300006914Populus RhizosphereSYQYIVESFVKDPSVPESTVKSMVERMAQLNLIDATAARATPTSAYFDNSFVAELRQSGFFDRLWK*
Ga0075419_1121034713300006969Populus RhizosphereMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0099828_1109535913300009089Vadose Zone SoilAQLNLIDAKAAQATLASAYFDNSFVAELKQSGFLDNLWK*
Ga0075418_1134268323300009100Populus RhizosphereIDAKSALATPTSAYYDNSFVAELKQSGFIDSLWK*
Ga0105247_1013395333300009101Switchgrass RhizosphereREPFVPESTMKSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0114129_1048246733300009147Populus RhizosphereEPFGPESAMQSMVQRMVQINMIDPKSAQATPTTAYFDNSFVAELKQSGFLDNIWK*
Ga0114129_1129037413300009147Populus RhizosphereTETFVREPFVPETTMQSMVQRMVQVNMIDAKSAQSTPTSAYFDNSYIMELKQSGFLDSIWK*
Ga0114129_1295363923300009147Populus RhizosphereVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0105242_1027266033300009176Miscanthus RhizosphereQSFLYVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVAELKQSGFLDGIWK*
Ga0126306_1148392613300010166Serpentine SoilVVDTFAREPFVPESVMQSMVRRMVEINMIDVKSAQATPISAYFDNSYVAELKQSGFLDNIWK*
Ga0126379_1212642923300010366Tropical Forest SoilMGQLNLIDARAAQSIQTTAYFDNSFVAELKQSGFLDTVWK*
Ga0134125_1282029313300010371Terrestrial SoilSTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0136847_1030280123300010391Freshwater SedimentVVETFVREPFVPEATMQSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVAELKQSGFLDNVWK*
Ga0134127_1004339313300010399Terrestrial SoilTFVREPFVPESVMQAMAQRMVQVNMIDAKSAQATPTTAYFDNSYVTELKQTGFFDSTWK*
Ga0134127_1041631923300010399Terrestrial SoilVQVNMIDAKSAQATPTSAYFDNSYVAELKQTGILDNIWK*
Ga0105246_1010005713300011119Miscanthus RhizosphereMQSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0137453_106934713300012034SoilQRMAQLNMIDAKAAQSTPTSAYYDNSFVNELKQSGYLDSAWK*
Ga0137376_1143928223300012208Vadose Zone SoilMVQVNMIDAKSAQSTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0137378_1155823223300012210Vadose Zone SoilESTMQSMVQRMAQVNMIDAKSAQSTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0137387_1023500023300012349Vadose Zone SoilVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDNLWK*
Ga0150984_11993582623300012469Avena Fatua RhizosphereFVKEPFVPESTVQSVVQRMVQLNMIDAKAAQSTPVTAYYDNSFVAELKQSGFLDSLWK*
Ga0157351_100402813300012501Unplanted SoilTFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0137407_1012546733300012930Vadose Zone SoilESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDNLWK*
Ga0137407_1226929413300012930Vadose Zone SoilTFVREPFVPESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDNLWK*
Ga0164299_1001121843300012958SoilYVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0164304_1175788823300012986SoilRQSYLYVSETFVREPFVPESTMQSMVQRMAQVNMIDAKSAQSTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0157307_113141923300013096SoilLLRQSFLYVTETFVREPFVSESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0157371_1017843533300013102Corn RhizosphereFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0157375_1238945323300013308Miscanthus RhizosphereETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQSTPVSAYFDNSYVAELKQAGFFDAVWK
Ga0163163_1131882713300014325Switchgrass RhizosphereLLRQSFLYVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK*
Ga0157380_1195075023300014326Switchgrass RhizosphereYLSENLARDPAVPENVIQSMVQRMAQLNMIDAKTAQSTPTSAYFDNSYVNELKQSGFVDSVWK*
Ga0180074_101824713300014877SoilENVVQSMVQRMAQLNMIDAKAAQSTPTSAYYDNSFVNELKQSGFLDSVWK*
Ga0132256_10051837323300015372Arabidopsis RhizosphereQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK*
Ga0132256_10390585223300015372Arabidopsis RhizosphereYLSENLARDPAVPENVIQSMVQRMAQLNMVDAKGAQSTPTSAYLDNSYVNELKQSGFVDSVWK*
Ga0132257_10368679013300015373Arabidopsis RhizosphereESTMQSMIQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKRSGFLDGIWK*
Ga0182034_1131581313300016371SoilFVREPFVPESTMQSMVRRMVQVNMIDAKSAQSTPISAYFDNSYVAELKQSGFLDGIWK
Ga0187821_1008502723300017936Freshwater SedimentFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0184638_129942113300018052Groundwater SedimentMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQNGFLDNIWK
Ga0184623_1003186823300018056Groundwater SedimentMIDAKAAQSTPVGAYFDNSFVAELKQSGFLDALWK
Ga0184619_1036353713300018061Groundwater SedimentMQSMVQRMVQVNMIDLKSAQATPISAYYDNSYVAELKQSGFLDNLWK
Ga0184640_1021070123300018074Groundwater SedimentSVMQAMVQRMVQVNMIDAKSAQATPTSAYFDNSYVAELKHNGFLDNLWK
Ga0184633_1004676413300018077Groundwater SedimentNMIDAKSAQTTPTSAYYDNSYVAELKQSGFLDNLWK
Ga0184633_1053924413300018077Groundwater SedimentGDLLRQSYLYVVDTFVREPFVPESVMQAMVQRMVQVNMIDAKSAQTTPTSAYYDNSYVAELKQSGFLDNIWK
Ga0184629_1012710213300018084Groundwater SedimentPENVVQSMVQRMAQLNMVDAKSAQATPVGAYYDNSFVAELKQSGFLDSVWK
Ga0190265_1195356123300018422SoilMIDAKAAQSTPTSAYYDNSFVNELKQSGFLDSAWK
Ga0190268_1212948813300018466SoilSYLYVVDTFVREPFVPESVIQAMVQRMVEVNMIDVKSAQATLTTAYYDNSYVAELKQTGVLDNIWK
Ga0190271_1026298633300018481SoilMVQRMVEVNMIDVKSAQATLTTAYYDNSYVAELKQTGVLDNIWK
Ga0190271_1029283913300018481SoilNFAKDPSVPENILQSMVQRMAQLNMIDAKAAQSTPTSAYYDNSFVNELKQSGFLASVWK
Ga0210382_1021528823300021080Groundwater SedimentMAQVNMIDAKSAQSTPTSAYFDNSYVAELKQSGFLDSVWK
Ga0224495_1012872143300022208SedimentQRMAQLNMIDAKAAQSTPTSAYFDNSYANELKQSGYIESVWK
Ga0207642_1096811323300025899Miscanthus RhizosphereYVTETFVREPFVPESTMKSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0207688_1014706613300025901Corn, Switchgrass And Miscanthus RhizosphereMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0207701_1040423113300025930Corn, Switchgrass And Miscanthus RhizosphereREPFVPESTMQSMVQRMVQVNMIDAKSAQSTPVSAYFDNSYVAELKQAGFFDTVWK
Ga0207708_1114055323300026075Corn, Switchgrass And Miscanthus RhizosphereMVQVNMIDAKSAQSTPVSAYFDNSYVAELKQAGFFDAVWK
Ga0207676_1231241613300026095Switchgrass RhizosphereMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0207674_1157935323300026116Corn RhizosphereRQSYAYVSDNFARDPAVPENVMQSMVQRMAQLNMIDTKPAQSTPAGAYYDNSFVNEVKSSGFLDSVWK
Ga0209995_102603913300027471Arabidopsis Thaliana RhizosphereLLRQSYLYVADTFVREPFVPESVMQSMVQRMVQVNMIDAKSAQNTPTSAYFDNSYVAALKQAGVLDKIWK
Ga0209966_103040623300027695Arabidopsis Thaliana RhizosphereSYLYVADTFVREPFVPESVMQSMVQRMVQVNMIDAKSAQNTPTSAYFDNSYVAALKQAGVLDKIWK
Ga0209073_1035021923300027765Agricultural SoilVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0209798_1010047623300027843Wetland SedimentVIQSMVQRMAQLNMIDTKAAQATPIVAYYDNSYVNELKQSGFLDSIWK
Ga0209283_1084722923300027875Vadose Zone SoilQLNLIDPKAAQATPASAYFDNSFVAELKQSGFLDNLWK
Ga0209486_1032792913300027886Agricultural SoilVMQAMVQRMVEVNMIDVKSAQATLTTAYYDNSYVAELKQTGFLDNIWK
Ga0209382_1174888813300027909Populus RhizosphereTFVREPFVPESTVQSMVQRMVQVNMIDGKSAQSIPTSAYFDNSYVAELKQSGFLDNLWK
Ga0268265_1132410613300028380Switchgrass RhizosphereQRQSYQYIGETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQTTPTTAYFDNSYVAELKQGGFLDSVWK
Ga0268265_1171323423300028380Switchgrass RhizospherePDLLRQSYQYIVETFVREPFVPENTMQSMVQRMVQVNMIDATSAQSTPVSAYFDNSYVAELKQSGFFDIVWK
Ga0268264_1081243613300028381Switchgrass RhizosphereEPFVPESTMQSMVQRMVQVNMIDAKSAQTTPTTAYFDNSYVAELKQSGFLDSVWK
Ga0307501_1027506113300031152SoilQSMVQRMVQVNMIDAKSAQTTPTTAYFDNSYVAELKQSGFLDSVWK
Ga0310813_1025584513300031716SoilREPFVPESTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0310892_1076656823300031858SoilTMQSMVQRMVQVNMIDAKSAQTTPTTAYFDNSYVAELKQSGFLDSVWK
Ga0310890_1076628313300032075SoilSTMQSMVQRMVQVNMIDAKSVQATPTSAYFDNSYVAELKQSGFLDGIWK
Ga0307471_10018922113300032180Hardwood Forest SoilESTMQSMVQRMVQVNMIDAKSAQTTPTSAYFDNSYVAELKQSGFLDSVWK
Ga0306920_10003641523300032261SoilVTETFVREPFVPESTMQSMVRRMVQVNMIDAKSAQSTPISAYFDNSYVAELKQSGFLDGIWK
Ga0310812_1026341223300032421SoilYVTETFVREPFVPESTMQSMVQRMVQVNMIDAKSAQATPTSAYFDNSYVTELKQSGFLDGIWK
Ga0316603_1149196713300033413SoilNYLYVSDTFVREPFVPDAAMQSMVQRMVQVNMIDAKSAQTTPTSAYYDNSFVNELKQSGFLDAVWK
Ga0316628_10224056733300033513SoilATVQSLVQRMVQLNLIDAKAAQSIPTSAYYDNSYVAELKQSGFLDNLWK


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