Metagenome / Metatranscriptome Family F086781

Basic Information
Family ID	F086781
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDIGAGVMESSERDAD
Number of Associated Samples	84
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.73 %
% of genes near scaffold ends (potentially truncated)	30.91 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (70.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.455 % of family members)
Environment Ontology (ENVO)	Unclassified (29.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.182 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1ICCgaii200_05311062 2ICChiseqgaiiDRAFT_07527281 3ICChiseqgaiiDRAFT_07543051 4JGI10216J12902_1000093873 5JGI10216J12902_1013658362 6JGI10216J12902_1063466171 7JGI10216J12902_1075271692 8JGI10216J12902_1122825251 9Ga0062593_1000050546 10Ga0062593_1009386402 11Ga0062589_1000017071 12Ga0062591_1003788111 13Ga0058863_119368411 14Ga0058861_119908312 15Ga0062381_100483034 16Ga0068869_1003794882 17Ga0070691_103525641 18Ga0070659_1014554952 19Ga0070700_1000251905 20Ga0070694_1000107075 21Ga0070686_1009581751 22Ga0070696_1000908783 23Ga0075428_10000027221 24Ga0075421_1012401101 25Ga0075434_1017368722 26Ga0079217_109841711 27Ga0079218_100931742 28Ga0079218_113526032 29Ga0079218_115569472 30Ga0075435_1019645821 31Ga0105107_102380102 32Ga0111539_101773803 33Ga0111539_104689344 34Ga0111538_122609521 35Ga0105029_1146492 36Ga0126305_109296251 37Ga0126306_110387451 38Ga0134127_100068646 39Ga0134123_109811951 40Ga0126317_105605692 41Ga0127502_101927921 42Ga0127502_106374461 43Ga0150985_1025280772 44Ga0157285_100286991 45Ga0157308_103238911 46Ga0157310_100699502 47Ga0157310_102095352 48Ga0164241_106694581 49Ga0075314_10568343 50Ga0075327_12917951 51Ga0157380_100072802 52Ga0180064_11196591 53Ga0173483_100922281 54Ga0180067_10278653 55Ga0132255_1047421981 56Ga0190266_102723482 57Ga0190266_112176341 58Ga0190265_101715293 59Ga0190265_114986022 60Ga0190265_131112212 61Ga0190270_100166812 62Ga0190270_118408582 63Ga0190274_115056221 64Ga0190274_120392132 65Ga0190271_100789722 66Ga0190271_108904591 67Ga0180114_11287271 68Ga0173481_100020993 69Ga0190264_101508401 70Ga0190264_121503962 71Ga0180107_12092111 72Ga0180113_12734792 73Ga0207707_112440602 74Ga0207660_102467661 75Ga0207662_104457703 76Ga0207652_115825312 77Ga0207704_101072343 78Ga0207712_108475252 79Ga0207668_117126741 80Ga0207674_117678951 81Ga0209481_100767162 82Ga0209486_100404353 83Ga0209486_101672011 84Ga0209486_105779911 85Ga0268265_102927521 86Ga0247825_101695532 87Ga0307497_101344032 88Ga0310887_105401322 89Ga0307408_1011744472 90Ga0307408_1013969961 91Ga0307468_1019060291 92Ga0307473_104233192 93Ga0310900_106940761 94Ga0307412_112498701 95Ga0310885_104183161 96Ga0310903_101450831 97Ga0307411_106308502 98Ga0310902_102142141 99Ga0310906_105661541 100Ga0310890_112183121 101Ga0310895_101415251 102Ga0315910_100143154 103Ga0315910_100161333 104Ga0315910_100860173 105Ga0315910_102370912 106Ga0315910_109001712 107Ga0315912_100553882 108Ga0315912_103706383 109Ga0307471_1017652112 110Ga0314783_141080_51_203
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1ICCgaii200_05311062 2JGI10216J12902_1013658362 3JGI10216J12902_1075271692 4Ga0070686_1009581751 5Ga0075421_1012401101 6Ga0075435_1019645821 7Ga0105029_1146492 8Ga0134123_109811951 9Ga0127502_101927921 10Ga0157308_103238911 11Ga0190270_118408582 12Ga0190271_108904591 13Ga0209486_105779911 14Ga0310885_104183161 15Ga0315910_102370912
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0134127_100068646 2ICCgaii200_05311062 3JGI10216J12902_1063466171 4JGI10216J12902_1075271692 5Ga0062593_1000050546 6Ga0070659_1014554952 7Ga0075428_10000027221 8Ga0079218_115569472 9Ga0105107_102380102 10Ga0105029_1146492 11Ga0126305_109296251 12Ga0127502_101927921 13Ga0127502_106374461 14Ga0157308_103238911 15Ga0075327_12917951 16Ga0157380_100072802 17Ga0190266_102723482 18Ga0190266_112176341 19Ga0190265_101715293 20Ga0190270_100166812 21Ga0190274_120392132 22Ga0190271_100789722 23Ga0190271_108904591 24Ga0190264_121503962 25Ga0209486_100404353 26Ga0307408_1013969961 27Ga0307412_112498701 28Ga0315910_100161333 29Ga0315910_100860173 30Ga0315910_102370912 31Ga0315910_109001712 32Ga0315912_100553882 33Ga0307471_1017652112
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.15% β-sheet: 0.00% Coil/Unstructured: 53.85%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01551	Peptidase_M23	64.55
PF13180	PDZ_2	4.55
PF00595	PDZ	3.64
PF13365	Trypsin_2	3.64
PF06628	Catalase-rel	1.82
PF00106	adh_short	0.91
PF12439	GDE_N	0.91
PF07043	DUF1328	0.91
PF00080	Sod_Cu	0.91
PF02518	HATPase_c	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0753	Catalase	Inorganic ion transport and metabolism [P]	1.82
COG2032	Cu/Zn superoxide dismutase	Inorganic ion transport and metabolism [P]	0.91
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.91

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.91 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	20.91 %
Unclassified	root	N/A	30.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Unclassified	root	N/A	30.00 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	15.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	15.45 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	15.45 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %
Unclassified	root	N/A	30.00 %

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0531106	Not Available	516	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0752728	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0754305	Not Available	722	Open in IMG/M
3300000956\|JGI10216J12902_100009387	All Organisms → cellular organisms → Bacteria → Proteobacteria	2779	Open in IMG/M
3300000956\|JGI10216J12902_101365836	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300000956\|JGI10216J12902_106346617	All Organisms → cellular organisms → Bacteria	2347	Open in IMG/M
3300000956\|JGI10216J12902_107527169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	658	Open in IMG/M
3300000956\|JGI10216J12902_112282525	Not Available	924	Open in IMG/M
3300004114\|Ga0062593_100005054	All Organisms → cellular organisms → Bacteria → Proteobacteria	5407	Open in IMG/M
3300004114\|Ga0062593_100938640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	879	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.27%
Host-Associated	Host-Associated	22.73%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	9.09%
Human	Host-Associated → Human	1.82%
Plants	Host-Associated → Plants	20.91%
Terrestrial	Environmental → Terrestrial	68.18%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	1.82%
Freshwater	Environmental → Aquatic → Freshwater	7.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.45%
Sediment	Environmental → Aquatic → Sediment	1.82%
Soil	Environmental → Terrestrial → Soil	68.18%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.73%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.82%
Loam	Environmental → Terrestrial → Soil → Loam	8.18%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.18%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.64%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.64%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.91%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M

Showing 1 to 10 of 84 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_05311062	2228664021	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDRAVGLTEASEPDGD
ICChiseqgaiiDRAFT_07527281	3300000033	Soil	MRIYDIXFDIDSFLDEMEEMQRARRQRQQQIHRGSDRAVGLTEASEPDGD*
ICChiseqgaiiDRAFT_07543051	3300000033	Soil	IYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRXGGLIEASERDTD*
JGI10216J12902_1000093873	3300000956	Soil	RIYDIEFDIDSFLDEMEELQRARRQRQQQVHRGSDVSGSLAEGSEDSD*
JGI10216J12902_1013658362	3300000956	Soil	IYDIEFDIDSFLDEMEEKQRARRQRQQQIHRSTEAGGSLSDGPLDRDAD*
JGI10216J12902_1063466171	3300000956	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQMHRGSDGSPGSSEGSDRETD*
JGI10216J12902_1075271692	3300000956	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQMRDASGVGNGPRDRDND*
JGI10216J12902_1122825251	3300000956	Soil	IYDIEFDIDSFLDEMEEMQRARRQRQQQIHRLADGASSGEGSDRDND*
Ga0062593_1000050546	3300004114	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAAGAIEASERDTD*
Ga0062593_1009386402	3300004114	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGNDIGAGVMESSERDAD*
Ga0062589_1000017071	3300004156	Soil	IYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAAGAIEASERDTD*
Ga0062591_1003788111	3300004643	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGMIEASDGDTD*
Ga0058863_119368411	3300004799	Host-Associated	RAAMRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDIGAGVMESSERDAD*
Ga0058861_119908312	3300004800	Host-Associated	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRSSDIGAGVMESSERDAD*
Ga0062381_100483034	3300004808	Wetland Sediment	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQMREASGAGNGPRDRDND*
Ga0068869_1003794882	3300005334	Miscanthus Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGGDIGAGVMESSERDAD*
Ga0070691_103525641	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGTDIGTGVMESSE
Ga0070659_1014554952	3300005366	Corn Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQINRGADRAGGLIEVSERDAD*
Ga0070700_1000251905	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGTDIGTGVMESSERDAD*
Ga0070694_1000107075	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRIYDIEFDIDSFLDEMEELQRARRQRQQQINRGSDAASAMMELSERDAD*
Ga0070686_1009581751	3300005544	Switchgrass Rhizosphere	MTRAAMRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGGDIGAGVMESSERDAD*
Ga0070696_1000908783	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDVGGVMESSERDSD*
Ga0075428_10000027221	3300006844	Populus Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGLIETSDGDTD*
Ga0075421_1012401101	3300006845	Populus Rhizosphere	DSFLDEMEEVQRARRQRQQQIHRGADRAGGLIETSDGDTD*
Ga0075434_1017368722	3300006871	Populus Rhizosphere	MRIYDIEFDIDSFLDEMEELQRARRQRQQQINRGSDVASAMMELSERDAD*
Ga0079217_109841711	3300006876	Agricultural Soil	MRIYDIEFDIDSFLDEMEEIQRARRQRQQQIHRGSDLGAGVMESAERDAD*
Ga0079218_100931742	3300007004	Agricultural Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDVGAGTNEGSDRDAD*
Ga0079218_113526032	3300007004	Agricultural Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIRPSTDVGAGGNESDRDLN*
Ga0079218_115569472	3300007004	Agricultural Soil	AAMRIYDIEFDIDSFLDEMEELQRARRQRQQQVHRGSDVSGNLADGSEHDPD*
Ga0075435_1019645821	3300007076	Populus Rhizosphere	MRIYDIEFDIDSFLDEMEELQRARRQRQQQINRGSD
Ga0105107_102380102	3300009087	Freshwater Sediment	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDAAAGVGEGSERETD*
Ga0111539_101773803	3300009094	Populus Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQINRGGDRAGGLIEASDRDAD*
Ga0111539_104689344	3300009094	Populus Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRTGGLIEASERDTD*
Ga0111538_122609521	3300009156	Populus Rhizosphere	NEPDEGEMRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRTGGLIEASERDTD*
Ga0105029_1146492	3300009984	Switchgrass Rhizosphere	MRIYDIEFDIDSFLDEMEELQRARRQRQQQIHRSADLGAGSSDTSDLDD*
Ga0126305_109296251	3300010036	Serpentine Soil	MRIYDIEFDIDSFLDEMEEMQRARRLRQQQVHGGSDVGSGEPSERDAD*
Ga0126306_110387451	3300010166	Serpentine Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRSADMGASGSEGSRDRDND*
Ga0134127_100068646	3300010399	Terrestrial Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDIGAGVMESSERDAD*
Ga0134123_109811951	3300010403	Terrestrial Soil	FDIDSFLDEMEEMQRARRQRQQQIHRGTDIGTGVMESSERDAD*
Ga0126317_105605692	3300011332	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQINRGSDIGAGVMESSERDAD*
Ga0127502_101927921	3300011333	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHQSTDVGAGGNERSRDRDLN*
Ga0127502_106374461	3300011333	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSEVVTGDSTERDGD*
Ga0150985_1025280772	3300012212	Avena Fatua Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDVGGVMESSERDGD*
Ga0157285_100286991	3300012897	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRA
Ga0157308_103238911	3300012910	Soil	DIEFDIDSFLDEMEEVQRARRQRQQQIHRSADRAGGVIDGSERDTD*
Ga0157310_100699502	3300012916	Soil	RIYDIEFDIDSFLDEMEEVQRARRQRQQQINRGADRAGGLIEVSERDAD*
Ga0157310_102095352	3300012916	Soil	DMRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAAGAIEASERDTD*
Ga0164241_106694581	3300012943	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADLAGGLIEASERDAD*
Ga0075314_10568343	3300014265	Natural And Restored Wetlands	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDAAAGVGE
Ga0075327_12917951	3300014272	Natural And Restored Wetlands	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQINRGSDVGAVVSESAERDAD*
Ga0157380_100072802	3300014326	Switchgrass Rhizosphere	MLIYDIEFDIDSFLDEMEEKQRARRQRQQQIHRSTEAGGSLSDGPLDRDAD*
Ga0180064_11196591	3300014876	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDAGGGEGSDRDVD*
Ga0173483_100922281	3300015077	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAAGAIKASERDTD*
Ga0180067_10278653	3300015257	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDAGGGEGSDRDVD
Ga0132255_1047421981	3300015374	Arabidopsis Rhizosphere	YDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDVGGVMESSERDSD*
Ga0190266_102723482	3300017965	Soil	MLIYDIEFDIDSFLDEMEEKQRARRQRQQQIHRSTDAGANLSDGPLERDSD
Ga0190266_112176341	3300017965	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRSGDMGAGVSEGPGDGDSN
Ga0190265_101715293	3300018422	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVRSSDVSPGEGPDRDTN
Ga0190265_114986022	3300018422	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDVGSGVSESSERDAD
Ga0190265_131112212	3300018422	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQLREASAGSGPRDRDND
Ga0190270_100166812	3300018469	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDVGTGVGDGSDRDVD
Ga0190270_118408582	3300018469	Soil	IEFDIDSFLDEMEELQRARRQRQQQIHGDVAGSSEGSDRDSD
Ga0190274_115056221	3300018476	Soil	NAAMLIYDIEFDIDSFLDEMEEKQRARRQRQQQIHRSTDAGANLSDGPLERDSD
Ga0190274_120392132	3300018476	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQREIHRGSDVGPGSEGSDRDTD
Ga0190271_100789722	3300018481	Soil	MLIYDIEFDIDSFLDEMEEKQRARRQRQQQIHRAADVGTSLSDGPLERDGD
Ga0190271_108904591	3300018481	Soil	SPLYRNELTKTRAAMRIYDIEFDIDSFLDEMEELQRARRQRQQQIHGDVAGSSEGSDRDT
Ga0180114_11287271	3300019232	Groundwater Sediment	MRIYDIEFDIDSFLDEMEEIQRARRQRQQQVHRGSDVGAGVGDGSDRDVD
Ga0173481_100020993	3300019356	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAAGAIEASERDTD
Ga0190264_101508401	3300019377	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRLADGASVSEGSDRDND
Ga0190264_121503962	3300019377	Soil	RIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRLADSASASEGSDRDND
Ga0180107_12092111	3300020064	Groundwater Sediment	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDAGGGEGSDREVD
Ga0180113_12734792	3300020065	Groundwater Sediment	MRIYDIEFDIDSFLDEMEEIQRARRQRQQQVHRGSDVGAAVGDGSDRDVD
Ga0207707_112440602	3300025912	Corn Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRSSDIGAGVMESSERDAD
Ga0207660_102467661	3300025917	Corn Rhizosphere	TMTRAAMRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGGDIGAGVMESSERDAD
Ga0207662_104457703	3300025918	Switchgrass Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQINRGADRAGGLIEVSERDAD
Ga0207652_115825312	3300025921	Corn Rhizosphere	YDIEFDIDSFLDEMEEMQRARRQRQQQIHRSSDIGAGVMESSERDAD
Ga0207704_101072343	3300025938	Miscanthus Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDIGAGVMESSERDAD
Ga0207712_108475252	3300025961	Switchgrass Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGTDIGTGVMESSERDAD
Ga0207668_117126741	3300025972	Switchgrass Rhizosphere	DMRIYDIEFDIDSFLDEMEEVQRARRQRQQQINRGADRAGGLIEVSERDAD
Ga0207674_117678951	3300026116	Corn Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQINRGGDRAGGLIEASDRDAD
Ga0209481_100767162	3300027880	Populus Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGLIETSDGDTD
Ga0209486_100404353	3300027886	Agricultural Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRGSDVGAGTNEGSDRDAD
Ga0209486_101672011	3300027886	Agricultural Soil	MRIYDIEFDIDSFLDEMEEIQRARRQRQQQIHRGSDLGAGVMESA
Ga0209486_105779911	3300027886	Agricultural Soil	IYDIEFDIDSFLDEMEELQRARRQRQQQVHRGSDVSGNLADGSEHDPD
Ga0268265_102927521	3300028380	Switchgrass Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGGDIGAGVMESSERDAD
Ga0247825_101695532	3300028812	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGMIEASDGDTD
Ga0307497_101344032	3300031226	Soil	MRIYDIEFDIDSFLDEMEELQRARRQRQQQINRGSDAASAMMELSERDAD
Ga0310887_105401322	3300031547	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGSVIDASERDTD
Ga0307408_1011744472	3300031548	Rhizosphere	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGMIEASDSDTD
Ga0307408_1013969961	3300031548	Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRSADVVGGINEGPRDRDAD
Ga0307468_1019060291	3300031740	Hardwood Forest Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDVAAGVMESSEHDAD
Ga0307473_104233192	3300031820	Hardwood Forest Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGSDTAAGVMESSERDAD
Ga0310900_106940761	3300031908	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGLIEASDGDTD
Ga0307412_112498701	3300031911	Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQVHRSADMGAGGSEGSRDRDND
Ga0310885_104183161	3300031943	Soil	QRTITRADMRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGLIEASDGDTD
Ga0310903_101450831	3300032000	Soil	DQRTITRADMRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGLIEASDGDTD
Ga0307411_106308502	3300032005	Rhizosphere	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRSADVVGGINEGSRDRDAD
Ga0310902_102142141	3300032012	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRGNDIGAGVMESSERDAD
Ga0310906_105661541	3300032013	Soil	MRIYDIEFDIDSFLDEMEELQRARRQRQQQINRGSDVASAMMELSERDAD
Ga0310890_112183121	3300032075	Soil	YDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGGLIEASDGDTD
Ga0310895_101415251	3300032122	Soil	DMRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRAGSVIDASERDTD
Ga0315910_100143154	3300032144	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQREIHRSSDLGPGGEGSDRDGD
Ga0315910_100161333	3300032144	Soil	MRIYDIEFDIDSFLDEMEELQRARRQRQQQIHRGADRVGGVIETSERDTD
Ga0315910_100860173	3300032144	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQQQIHRAAEFAGLGDGSRDRDND
Ga0315910_102370912	3300032144	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQRDRGDVGPSSESSERDAD
Ga0315910_109001712	3300032144	Soil	MRIYDIEFDIDSFLDEMEELQRARRQRQQQIHRASDIASLNDGSRDRDTD
Ga0315912_100553882	3300032157	Soil	MRIYDIEFDIDSFLDEMEEMQRARRLRQQQRGSDVSQGSDASERDAD
Ga0315912_103706383	3300032157	Soil	MRIYDIEFDIDSFLDEMEEMQRARRQRQRDRGDVGPVSEGSERDAD
Ga0307471_1017652112	3300032180	Hardwood Forest Soil	MRIYDIDFDIDSFLDEMEELQRARRQRQQQINRGSDAASAAMEVSERDAD
Ga0314783_141080_51_203	3300034662	Soil	MRIYDIEFDIDSFLDEMEEVQRARRQRQQQIHRGADRTGGLIEASERDTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086781

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences