NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F086767

Metagenome / Metatranscriptome Family F086767

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F086767
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 115 residues
Representative Sequence MVAVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVTADAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGVAVLIIVATD
Number of Associated Samples 83
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 79.09 %
% of genes near scaffold ends (potentially truncated) 26.36 %
% of genes from short scaffolds (< 2000 bps) 75.45 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(15.454 % of family members)
Environment Ontology (ENVO) Unclassified
(29.091 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146
12213988108
2INPhiseqgaiiFebDRAFT_1058504361
3INPhiseqgaiiFebDRAFT_1058505393
4INPhiseqgaiiFebDRAFT_1058532312
5INPhiseqgaiiFebDRAFT_1058534063
6JGI1027J12803_1044300094
7soilL2_102663361
8Ga0058903_15114442
9Ga0062593_1035127551
10Ga0058897_109136041
11Ga0063356_1000678266
12Ga0062595_1012745691
13Ga0070688_1007556462
14Ga0070701_103870721
15Ga0070705_1012235111
16Ga0070700_1011903431
17Ga0070694_1006625922
18Ga0070678_1005427042
19Ga0070698_1000637231
20Ga0070741_111957162
21Ga0070697_1005594351
22Ga0070730_1000889410
23Ga0070731_100028146
24Ga0070731_100359273
25Ga0070731_101724193
26Ga0070740_103328401
27Ga0070702_1013913961
28Ga0066903_1015024081
29Ga0074479_100963032
30Ga0074470_1127184234
31Ga0066652_1001291933
32Ga0066652_1002492692
33Ga0075428_1012581421
34Ga0075421_1024889092
35Ga0075430_1011178172
36Ga0075433_109234742
37Ga0066710_1010159412
38Ga0111539_100815614
39Ga0075418_119850361
40Ga0066709_1009444122
41Ga0105091_100040776
42Ga0111538_100101132
43Ga0105347_11466222
44Ga0134124_100595731
45Ga0126383_128268041
46Ga0134127_103062193
47Ga0134127_119971682
48Ga0134127_123160031
49Ga0134122_100249153
50Ga0134122_100294653
51Ga0134122_104829272
52Ga0134121_1000128316
53Ga0134121_101156171
54Ga0134121_110476161
55Ga0134123_100561141
56Ga0134123_102403371
57Ga0134123_104726421
58Ga0150983_143521091
59Ga0137457_10948412
60Ga0137427_100778473
61Ga0150985_1172917621
62Ga0150984_1073022393
63Ga0150984_1140541013
64Ga0150984_1181372412
65Ga0137410_1000036217
66Ga0126369_119533372
67Ga0182037_120182931
68Ga0190266_101251101
69Ga0190266_103137763
70Ga0187894_101554362
71Ga0210402_117038121
72Ga0242656_11014162
73Ga0207646_103966391
74Ga0207708_115693232
75Ga0207683_102035412
76Ga0209077_10126542
77Ga0209166_101052982
78Ga0209579_1000198213
79Ga0209579_101457321
80Ga0207428_107959252
81Ga0209382_121650331
82Ga0265460_130282571
83Ga0308197_101414872
84Ga0308199_11894421
85Ga0308181_10352122
86Ga0308194_101690321
87Ga0308194_102441222
88Ga0310813_1000025013
89Ga0310813_100015526
90Ga0310813_100022783
91Ga0310813_103690182
92Ga0310813_112123351
93Ga0310813_119181762
94Ga0310813_121187211
95Ga0307474_103831791
96Ga0307468_1021801881
97Ga0307475_103520302
98Ga0310892_106248212
99Ga0306921_101288002
100Ga0307479_102574422
101Ga0315281_100994406
102Ga0310812_100954671
103Ga0310812_101904551
104Ga0310812_103479641
105Ga0314785_018396_89_439
106Ga0314781_140381_3_296
107Ga0314783_059406_323_673
108Ga0314786_075923_228_578
109Ga0314787_072178_146_496
110Ga0314793_050241_310_660
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 55.94%    β-sheet: 0.00%    Coil/Unstructured: 44.06%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110MVAVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVTADAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGVAVLIIVATDExtracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreSignal PeptideTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
100.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Sediment
Soil
Sediment (Intertidal)
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Soil
Sugarcane Root And Bulk Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Microbial Mat On Rocks
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Avena Fatua Rhizosphere
15.5%11.8%8.2%6.4%3.6%6.4%8.2%8.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
22139881082209111006Arabidopsis RhizosphereMVGLSRFILAFAVVGLFAQHLYADVIPSRRAADTSDSSQKIQTRLVQLGLTADAAKDQAQKLTVEQTKYFAANVDRIQLAGQGENWGGQSDNLWWEWLFGI
INPhiseqgaiiFebDRAFT_10585043613300000364SoilMVAVGRLLVAVALAGLFTPSLYADVIPTRRAGDTSESALKVENRLVQLGVPATAAREQIQKLTDEQTHYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIAALAGAVVIIMLAASN*
INPhiseqgaiiFebDRAFT_10585053933300000364SoilMVXVGRLLXAVAXAGXXXXXLXADVXPTRRAGXTXXSXXKVXXRLVXLGVXXXAAXEQXQXLTDXQTXYFAGNPXRXXLVGQENWGGQSDNLWWEWVFGLAALAGAVVIIVVALD*
INPhiseqgaiiFebDRAFT_10585323123300000364SoilMVGVGRLLVAFAVVGLFAQHLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQVQKLNVDQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIGALLVAGAVIVIALQN*
INPhiseqgaiiFebDRAFT_10585340633300000364SoilMVVVGRLLLAVALAGFLSQPLYADVIPTRRAGDTTESSQKVEQRLVELGVSSQAAKEQIQNLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGAVVIIVVALD*
JGI1027J12803_10443000943300000955SoilMVGVGRLLVAFAVVGLFAQHLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQVQKLNVDQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIGALL
soilL2_1026633613300003319Sugarcane Root And Bulk SoilMVRVSRLLVAFAVTGLFAQHLYADVIPSRRAADTSDASQKITGRLVELGLTADAAKEQAQKLSVDQTKYFAANLDRIQLVGQGENWGGQSDNLWWEWLFGIGALLVAGAVVVIALND*
Ga0058903_151144423300004103Forest SoilMVAVSRLLVAVAMAGLFTQSLHADVIPTRRAADTTESAQKVEGRLVQLGVTSEAARQQIQNLTDEQTHYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIVALVAVVAFIAFEVGNN*
Ga0062593_10351275513300004114SoilMVAVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVAADAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGVAVLIIVATD*
Ga0058897_1091360413300004139Forest SoilLLVAVAMAGLFSQPVYADIIPTRRAGDSAESSRKVESRLVQLGVSSEAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWLLGTAALVAVVGFIIWDIGNN*
Ga0063356_10006782663300004463Arabidopsis Thaliana RhizosphereMVGISRLLVAFAVTGLFAQHLYADVIPTRRAADTSDSSQKIQTRLVELGLTADAAKEQTQKLNVDQTKYFAANLDRIQLVGQGENWGGQSDNLWWEWVFGIGILIVAGAVIVIALND*
Ga0062595_10127456913300004479SoilMVGVSRLLVALAVSGLLTSPLYADVIPTRRAGETSESSKKVESRLLQLGVSADAAKDQVTNLTDEQTRYFAADSERIQLVGQENWGGQSDNLWWEWLFGIAALLVAGAVIVIALND*
Ga0070688_10075564623300005365Switchgrass RhizosphereMVGVSRLLVAFAVAGLLSHPLYADVIPTRRAADTADSAKKVESRLVELGMAADDAKVQVKNLTDDQTKYFAGAPERIQLVGQENWGGQSDNLWWEW
Ga0070701_1038707213300005438Corn, Switchgrass And Miscanthus RhizosphereMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADSSDSSAKVQARLVELGLTADAAKDQVQKLNVEQTKYFAANTDRIQLVGQGENWGGQSDNLWWEW
Ga0070705_10122351113300005440Corn, Switchgrass And Miscanthus RhizosphereMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQAQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAAIVGVGIFIAIEV
Ga0070700_10119034313300005441Corn, Switchgrass And Miscanthus RhizosphereMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADSSDSSAKVQARLVELGLTADAAKDQVQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAALAGAAVVLIIALND*
Ga0070694_10066259223300005444Corn, Switchgrass And Miscanthus RhizosphereMVGVSRLLVAFAVAGLLSQPLYADVIPTRRAADTKDSSQKVESRLVQLGLDADAAKEQVKSLTDDQTKYFAADSERIQLVGQENWGGQSDNLWWEWVFGILALAAVGAVILIAIDE*
Ga0070678_10054270423300005456Miscanthus RhizosphereMVAVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVTADAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGVAVLIIVATD*
Ga0070698_10006372313300005471Corn, Switchgrass And Miscanthus RhizosphereSRLLVAFAVAGLLSQPLYADVIPTRRAADTKDSSQKVESRLVQLGLDADAAKEQVKSLTDDQTKYFAADSERIQLVGQENWGGQSDNLWWEWVFGILALAAVGAVILIAIDE*
Ga0070741_1119571623300005529Surface SoilMVRVGQLVVALAMMGLFTQSLHADVIPTRRAGDTSESSRKVESRLLQLGVSPDVAKEQIQKLTDEQTAYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLVALVGVGVLIVYEVNKS*
Ga0070697_10055943513300005536Corn, Switchgrass And Miscanthus RhizosphereMVRVSRLVVALAVAGFLSQPLYADVIPTRRAADTADSSKKVESRLVELGVTAERAKEQTQTLNEDQTRYFAANTERIQLVGQGENWGGQSDNMWWEWVFGILAIAAAGAIILIAVHNAD*
Ga0070730_10008894103300005537Surface SoilMVAVSRLLVAVAMAGLFTQSLHADVIPTRRAADTTESAQKVESRLVQLGVTSEAARQQILNLTDDQTHYFAGNPERIQLVGQENWGGQSDNLWWE*
Ga0070731_1000281463300005538Surface SoilMVAVGRLLVAVAMAGLFSQPVYADIIPTRRAGDSAESSRKVESRLVQLGVSSEAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGILALVAVGGFIVWKAGQP*
Ga0070731_1003592733300005538Surface SoilMVPVGRLLVALAVMGLFTQSLHADVIPTRRAGDTSESSRKVESRLLQLGVSSEVAKEQIQKLTDEQTAYFAGNPERIQLVGQEQWGGQSDNLWWEWLFGLVFLVGVGALVAFEVNRS*
Ga0070731_1017241933300005538Surface SoilMVAVGRLVVAVAMAGLFSQSLHADVIPTRRAADTRESAQKVEGRLLELGVSAEAAKEQIQNLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIAALVAVGAFIVWEMGNN*
Ga0070740_1033284013300005607Surface SoilMVRVGQLVVALAVVGLFTQSLHADVIPTRRAGDTSESSRKVESRLLQLGVSPDAAKEQIQKLTDEQTAYFAGNPERIQLVGQENWGGQSDNLWWEWLFGLVALVGVGVLIVYEVNKS*
Ga0070702_10139139613300005615Corn, Switchgrass And Miscanthus RhizosphereMVGVSRLLVALAVSGLLTSPLYADVIPTRRAGETSESSKKVESRLLQLGVSADAAKDQVTNLTDEQTRYFAADSERIQLVGQENWGGQSDNLWWEWVFGILALGGVAALIAIEVAKD*
Ga0066903_10150240813300005764Tropical Forest SoilMVGVSRLLVAFAIVGLFAQHLYADVIPSRRTADTSESSAKVQARLVELGLTADAAKEQVTKLNVEQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIAALIGGAAVIIIVATN*
Ga0074479_1009630323300005829Sediment (Intertidal)RMVAVRRLLAVLAVAALFAQPLYADVIPTRRAGDASESSKKVESRLVELGVSANDAKGQVQKLTAQETKYFADSPERIQLVGQENFGGQSDNLWWEWLFGIVALVGGALVIYFVLANNGF
Ga0074470_11271842343300005836Sediment (Intertidal)MVAVSRLLVALAFAGFIAPPLYADVIPTRRAVDTTDSAKKVESRLVQLGVSADSAKEQIQKLTDDQTTYFAGNPERIQLVGQENFGGQSDNLWWEWVFGLAALGGVAAFIVIEVGK*
Ga0066652_10012919333300006046SoilMVVVGRLLLAVALAGFLSQPLYADVIPTRRAGDTTESSQKVEQRLVDLGVSSQAAKEQIQKLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGAVVIIVVALD*
Ga0066652_10024926923300006046SoilMVGVSRLLVALAVSGLLTSPLYADVIPTRRAGETSESSKKVESRLLQLGVSADTAKDQVTNLTDEQTRYFAADSERIQLVGQENWGGQSDNLWWEWVFGILALGGVAALIAIEVAKD*
Ga0075428_10125814213300006844Populus RhizosphereLLVALALVGLFAQPLYADVIPTRRAGDTKESSQKVQTRLVELGMTADAAKDQVQQLTAEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGLAFLAVGVGIIIIVAD*
Ga0075421_10248890923300006845Populus RhizosphereMVGASRLLVALALVGLFAQPLYADVIPTRRAGDTKESSQKVQTRLVELGMTADAAKDQVQQLTAEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGLAFLAVGVGIIIIVAD*
Ga0075430_10111781723300006846Populus RhizosphereMVGASRLLVALAAAGLFAQPLYADVIPTRRAGDTKESSQKVQTRLVELGMTADAAKDQVQQLTTEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGIAMLAVGVGVIIIVAD*
Ga0075433_1092347423300006852Populus RhizosphereMVGLSRFILAFAVVGLFAQHLYADVIPSRRAADTSDSSQKIQTRLVQLGLTADAAKDQAQKLTVEQTKYFAANVDRIQLAGQGENWGGQSDNLWWEWLFGILALVAVAAVIIIATR*
Ga0066710_10101594123300009012Grasslands SoilMVGVSRLLVAFAVAGLCAQPLYADVIPTRRAGDTSNTSQKVESRLVQLGLSADGAKEQVQKLTDEQTKYFASSVERIQLVGQAGSENWGGQSDNLWWEWVFGILALAAAGAIILIAVNNN
Ga0111539_1008156143300009094Populus RhizosphereMVGASRLLVALALVGLFVQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTSDAARDQVQQLTVEQTKYFAGNSDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD*
Ga0075418_1198503613300009100Populus RhizosphereMVGASRLLVALALVGLFAQPLYADVIPTCRAGDTKESSQKVQTRLVELGMTADAAKDQVQQLTAEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGLAFLAVGVGIIIIVAD*
Ga0066709_10094441223300009137Grasslands SoilMVGVSRLLVAFAVAGLCAQPLYADVIPTRRAGDTSNTSQKVESRLVQLGLSADGAKEQVQKLTDEQTKYFASSVERIQLVGQAGSENWGGQSDNLWWEWVFGILALAAAGAIILIAVNNNN*
Ga0105091_1000407763300009146Freshwater SedimentMVGASRLLVALALVGLFAQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTADAAKDQVSQLTVDQTKYFAGNPDRIQLVAQAENFGGQSDNLWWEWVFGLAFLAVGVGVIIIVAD*
Ga0111538_1001011323300009156Populus RhizosphereVQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTSDAARDQVQQLTVEQTKYFAGNSDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD*
Ga0105347_114662223300009609SoilMVGASRLLVALALVGLFAQPLYADVIPTRRAGDAKESSQKVQTRLVELGMTADAAKDQVQQLTAEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGLAFLAVGVGVIIIVAD*
Ga0134124_1005957313300010397Terrestrial SoilMVGVSRLLVAFAVVGLFAQHLYADVIPSRRTADASDSSAKVQARLVELGLTADAAKDQVQKLNVDQTKYFAANTDRIQLVGQGENFGGQSDNLWWEWLFGIAALAAAGIVIILALQN*
Ga0126383_1282680413300010398Tropical Forest SoilIEEAGMVGVSRLLVALAVSGLLTSPLYADVIPTRRAGDTTDSSKKVESRLVTLGVSAEAAKDQVKNLTDDQTRYFASDLDRIQLVGQGENWGGQSDNLWWEWLFGILALGGVAAFIAIKVAQE*
Ga0134127_1030621933300010399Terrestrial SoilMVRVSRLLVAFAVTGLFAQALYADVIPSRRSSETSDSSQKIQTRLVQLGLTADAAKDQAQKLTVDQSKYFAANLDRIQLVGQGENWGGQSDNLWWEWLFGIGALLVAGAVIVIALND*
Ga0134127_1199716823300010399Terrestrial SoilMVGVSRLLVAFAVVGLFAQHLYADVIPSRRAADASDSSAKVQARLVELGLTADAAKDQVQKLNVEQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIGALLVAGAVIVIALND*
Ga0134127_1231600313300010399Terrestrial SoilMVGVSRLLVALAVAGFLSQPLYADVIPTRRGSDAAESSKKVESRLVELGLDATVAKEQVKNLSDDQTKYFAAETDRVKLLGQGENWGGQSDNLWWEWVFGILALGAAAA
Ga0134122_1002491533300010400Terrestrial SoilMVAVSRLLVAVAVAGLFSTPLYADVIPTRRAGDTTESSAKVESRLTQLGVSSEAAKDQIGKLTDDQTHYFAANPERIQLVGQENWGGQSDNLWWEWVFGLAALGGVVAFIIIEAGN*
Ga0134122_1002946533300010400Terrestrial SoilMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQAQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAAIVGVGIFIAIEVSN*
Ga0134122_1048292723300010400Terrestrial SoilMVGVSRLLVALAVAGFLAQPLYADVIPTRRAADTTDSSKKVESRLQQLGVSADAAKEQVRNLTDDQTKYFAADSERIQLVGQENWGGQSDNMWWEWVFGILAIAAAGAIILIAVHNAD*
Ga0134121_10001283163300010401Terrestrial SoilMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTANTSDSSAKVQARLVELGLTADAAKDQAQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAAIVGVGIFIAIEVSN*
Ga0134121_1011561713300010401Terrestrial SoilPPIIRSLREPSAGTRLDRKRRMGMVGVSRLLVALAVAGFLAQPLYADVIPTRRAADTTDSSKKVESRLQQLGVSADAAKEQVRNLTDDQTKYFAADSERIQLVGQENWGGQSDNMWWEWVFGILAIAAAGAIILIAVHNAD*
Ga0134121_1104761613300010401Terrestrial SoilMVAVSRLLVALAMAGLFTQPLYADVIPTRRASDTTQSSKKVESRLVQLGISSESAKEQIQKLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWLFGLAALGGVAAFIIIEVSKD*
Ga0134123_1005611413300010403Terrestrial SoilMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQAQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAALAGAAVVLIIALND*
Ga0134123_1024033713300010403Terrestrial SoilRSNSNGPAILQEEDRMVAVSRLLALVAVASLFAQPLYADVIPTRRAGDTSESSKKVETRLVQLGVSAEDAKSQVKKLTVQETKYFADSPERIQLVGQGENFGGQSDNLWWEWVFGIAAIVGTGLLIYFVARNQ*
Ga0134123_1047264213300010403Terrestrial SoilMVGVSRLLVAFAVVGLFAQHLYADVIPSRRASDTSDSSAKVQARLVELGLTADAAKDQVQKLNVEQTKYFAANTDRIQLVGQGENFGGQSDNLWWEWLFGIGALLVAGAVIVIALND*
Ga0150983_1435210913300011120Forest SoilQEENRMVAVGRLLVAVAMAGLFSQPVYADIIPTRRAGDSAESSRKVESRLVQLGVSSEAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGTLALVAVVAFIIWDVGNN*
Ga0137457_109484123300011443SoilMVGASRLLVALALVSLFVQPLYADVIPTRRASDAKDTTQKVETRLVNLGLTADAARDQVQKLTVDQTRYFAENPGRIQLVGQGENFGGSSDNMWWEWVFGIGMLAIAGAI
Ga0137427_1007784733300011445SoilMVGASRLLVALALVGLFAQPLYADVIPTRRAGDAKESSQKVQSRLVELGMTADAAKDQVQQLTVEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGLAFLAVGVGVIIIVAD*
Ga0150985_11729176213300012212Avena Fatua RhizosphereRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVTAEAAKDQIQKLTDDQTTYFAGSPERIQLVGQENWGGQSDNLWWEWVFGIAALAGAVVLMVVFLD*
Ga0150984_10730223933300012469Avena Fatua RhizosphereMLGLASGILCGDVIPTRRAGDTTDSSAKVETRLLQLGVSADAAKEQIGKLTDDQTRYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGVAVFIIIEAGKD*
Ga0150984_11405410133300012469Avena Fatua RhizosphereVSRLLVALAMAGLFTQPIYADVIPTRRAADTTDSARKVESRLVELGITSDAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIAALAGVAIFIAIEAGK*
Ga0150984_11813724123300012469Avena Fatua RhizosphereVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVTAEAAKDQIQKLTDDQTTYFAGSPERIQLVGQENWGGQSDNLWWEWVFGIAALAGAVVLMVVFLD*
Ga0137410_10000362173300012944Vadose Zone SoilMLAVSRLLVALAVAGICAQPLYADVIPTRRAEDTRDASRKVESRLTQLGVSSEAAKDQLQKLTDDQTTYFAGSPERIQLVGQENFGGQSDNLWWEWVFGIAALVGVAVFIVIEVGKD*
Ga0126369_1195333723300012971Tropical Forest SoilMVGVSRLLVAFAIVGLFAQHLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQVQKLNVDQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWVFGTLALVGVAAIIIIEVNK*
Ga0182037_1201829313300016404SoilMVRVGRLLVAMAMAGLFTQSLHADVIPTRRAGETSESSRKVESRLLQLGVSVDSAKEQIQKLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWLFGLAALA
Ga0190266_1012511013300017965SoilMVVVSRLLVAVALAGFLSQPLYADVIPTRRAGDTADSSQKVESRLVQLGVSSPAAKEQIQKLTDDQTHYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGAAVII
Ga0190266_1031377633300017965SoilGFLSQPLYADVIPTRRAGDTTESSQKVESRLVQLGVSSPAAKEQIQKLTDDQTHYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGAAVIIVVATDN
Ga0187894_1015543623300019360Microbial Mat On RocksMVGISRLLVAFAVTGLFAQHLYADVIPSRRTADTSDSSAKVQTRLVALGLTADAARDQVQKLTVEQTKYFASNVDRIQLVGQGENFGGQSDNLWWEWLFGIAALAGAAVVIIIAVQD
Ga0210402_1170381213300021478SoilMVAVSRLLVAVAMAGFFTQPLHADIIPTRRAADTSESSKKVEGRLLQLGVSSDAAKEQIQKLTDEQTNYFAGNPERIQLVGQENWGGQSDNLWWEWVFGVLALVAVGAF
Ga0242656_110141623300022525SoilMVGVSRLVVAFAVAGFLAQPLCADVIPTRRAGDTTDSSCKVQSRLVDLGLSADAAKDQVQKLTEEQTKYFAASPDRIQLVGQGENWGGQSDNLWWEWVFGIAALAAAGAIIIIAVNNSN
Ga0207646_1039663913300025922Corn, Switchgrass And Miscanthus RhizosphereMVGVSRLLVAFAVAGLLSQPLYADVIPTRRAADTKDSSQKVESRLVQLGLDADAAKEQVKSLTDDQTKYFAADSERIQLVGQENWGGQSDNLWWEWVFGILALAAVGAVILIAIDE
Ga0207708_1156932323300026075Corn, Switchgrass And Miscanthus RhizosphereMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADSSDSSAKVQARLVELGLTADAAKDQVQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAALAGAAVVLIIALND
Ga0207683_1020354123300026121Miscanthus RhizosphereMVAVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVTADAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGLAALAGVAVLIIVATD
Ga0209077_101265423300027675Freshwater SedimentMVGASRLLVALALVGLFAQPLYADVIPTRRAGDAKESSRKVESRLVTLGMTADAAKDQVSQLTVDQTKYFAGNPDRIQLVAQAENFGGQSDNLWWEWVFGLAFLAVGVGVIIIVAD
Ga0209166_1010529823300027857Surface SoilMVAVSRLLVAVAMAGLFTQSLHADVIPTRRAADTTESAQKVESRLVQLGVTSEAARQQILNLTDDQTHYFAGNPERIQLVGQENWGGQSDNLWWE
Ga0209579_10001982133300027869Surface SoilMVAVGRLLVAVAMAGLFSQPVYADIIPTRRAGDSAESSRKVESRLVQLGVSSEAAKDQIQKLTDDQTTYFAGNPERIQLVGQENWGGQSDNLWWEWVFGILALVAVGGFIVWKAGQP
Ga0209579_1014573213300027869Surface SoilMVPVGRLLVALAVMGLFTQSLHADVIPTRRAGDTSESSRKVESRLLQLGVSSEVAKEQIQKLTDEQTAYFAGNPERIQLVGQEQWGGQSDNLWWEWLFG
Ga0207428_1079592523300027907Populus RhizosphereMVGASRLLVALALVGLFVQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTSDAARDQVQQLTVEQTKYFAGNSDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0209382_1216503313300027909Populus RhizosphereMVGASRLLVALALVGLFAQPLYADVIPTRRAGDTKESSQKVQTRLVELGMTADAAKDQVQQLTAEQTKYFAGNPGRIQLVGQAENFGGQSDNMWWEWVFGLAFLAVGVGIIIIVAD
Ga0265460_1302825713300030740SoilMLAASRLIVVLALASPFFADVIPTRRASDTTESSQKVQARLQQLGLSPDAAKEQIQNLTDGQTHYFAGSPERIQLVGQENFGGQSDNLWWEWVFGLVALAGTASIKGLSSES
Ga0308197_1014148723300031093SoilMVGISRLLVAFAMAGLCSHPLYADVIPTRRAGESSDSSKKVETRLVQLGLTADAAKDQVQKLTEDQTRYFAGNSERIQLVGQENWGGQSDNLWWEWVFGIAALVGAIAIIAIAVGN
Ga0308199_118944213300031094SoilMVGVSRLLVALAVAGFLAQPLYADVIPTRRAADTTDSTRKVESRLVQLGVSADAAKEQVRNLTDDQTKYFAADSERIQLVGQENWGGQSDNMWWEWVFGILAIAAAGAIILIAVHNAD
Ga0308181_103521223300031099SoilMIAVSRLLVAVAMAGLFTQSVHADVIPTRRAGDTSESAQKVESRLVQLGVSSDAAKEQIQKLTDDQTRYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIAALVGAIAVIAIAVGN
Ga0308194_1016903213300031421SoilIIRVRRKVSRTGLGEPHEENRMIAVSRLLVAVAMAGLFTQSVHADVIPTRRAGDTRESAQKVESRLVQLGVSSDAAKEQIQKLTDDQTRYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIAALIGAIAIIAIAAGN
Ga0308194_1024412223300031421SoilMVGVSRLLVALALAGLFTQQAYADVIPTRRAADTTDSSKKVESRLVQLGVAATEAKTQVQNLTDDQAKYFAASAERIQLVGQENFGGQSDNLWWEWVFGILALGAAVGIIMIALNN
Ga0310813_10000250133300031716SoilMVGVSRLLVALAVSGLLTHPLYADVIPTRRAGDTTDSTKKVESRLVQLGVSAEAAKDQVKNLTDEQTRYFAADSERIQLVGQENWGGQSDNLWWEWLFGILALGGVAALIAIEVAKD
Ga0310813_1000155263300031716SoilMVRVSRLLVAFAVVGLFAQSLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQAQKLTVEQTKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAAIVGVGIFIAIEVSN
Ga0310813_1000227833300031716SoilMVGVSRLLVALAVSGLLTSPLYADVIPTRRAGDTTDSSKKVESRLVQLGVSAEAAKDQVKNLSDDQTRYFAADSERIQLVGQENWGGQSDNLWWEWVFGILALGGVAALIAIEVAKD
Ga0310813_1036901823300031716SoilMVGVSRLLVAFAVVGLFAQHLYADVIPSRRTADASDSSAKVQARLVELGLTADAAKDQVQKLNVDQTKYFAANTDRIQLVGQGENFGGQSDNLWWEWLFGIAALAAAGIVIILALQN
Ga0310813_1121233513300031716SoilMVRVSRLLVAFAVTGLFAQHLYADVIPSRRAADTSDASQKITGRLVALGLTADAAKDQAQKLSVDQTKYFAANLDRIQLVGQGENWGGQSDNLWWEWLFGIGALLVAGAVIVIALND
Ga0310813_1191817623300031716SoilMVGVSRLLVALAVSGLLTSPLYADVIPTRRAGDTADSTKKVESRLVQLGVSAEAAKDQVKNLTDEQTRYFAADSERIQLVGQENWGGQSDNLWWEWLFGILALGGVAALIAVEVSKD
Ga0310813_1211872113300031716SoilMVRVSRLLVAFAVVGLFAQHLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQVQKLSVEQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIAALAGAAVVLIIALND
Ga0307474_1038317913300031718Hardwood Forest SoilEEDRMVAVGRLLIAVAVAGLFTQPLYADVIPTRRAGDTSESAQKVESRLVQLGVTPEAAKEQIQKLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWVFGIVALTAVAVFIVIEVNGSIN
Ga0307468_10218018813300031740Hardwood Forest SoilMVRVSRLLVAFAVVGLFAQHLYADVIPSRRTADTSDSSAKVQARLVQLGLTADAAKEQVQKLTVDQAKYFAANTDRIQLAGQGENWGGQSDNLWWEWLFGIAALAGVAAFIIIEVNK
Ga0307475_1035203023300031754Hardwood Forest SoilMVAMSRLLVAVAMAGFFTTTLHADVIPTRRAGDTSESAQKVHSRLLQLGVSPDAAKEQLQKLTDEQTAYFAGDPQRIQLVGQEISAENWGGQSDNFWWEWILGIVFLGVVAGYIAYEVQGKTN
Ga0310892_1062482123300031858SoilRLLVALALVGLFVQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTADAAKDQVSQLTVDQTKYFAGNPDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0306921_1012880023300031912SoilMVRVGRLLVAMAMAGLFTQSLHADVIPTRRAGETSESSRKVESRLLQLGVSVDSAKEQIQKLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWLFGIVALVGVAVFIIWEVNNQ
Ga0307479_1025744223300031962Hardwood Forest SoilMVAVSRLLVAVAMAGLFTQSLHADVIPTRRAADTTESAQKVESRLLQLGVTSEAARQQIQNLTDEQTHYFAGNPERIQLVGQENWGGQSDNLWWEWVFGILALVGVVVLIAVEVGNN
Ga0315281_1009944063300032163SedimentMVAVRRLLAVLAVAALFAQPLYADVIPTRRAGDASESSKKVESRLVELGVSANDAKGQVQKLTAQETKYFADSPERIQLVGQENFGGQSDNLWWEWLFGIVALVGGALVIYFVLANNGF
Ga0310812_1009546713300032421SoilVGLFAQHLYADVIPSRRTADTSDSSAKVQARLVELGLTADAAKDQVQKLSVEQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIAALAGAAVVLIIALND
Ga0310812_1019045513300032421SoilMVGVSRLLVAFAVVGLFAQHLYADVIPSRRTADASDSSAKVQARLVELGLTADAAKDQVQKLNVDQTKYFAANTDRIQLVGQGENWGGQSDNLWWEWLFGIAALAGAAVVIIIALND
Ga0310812_1034796413300032421SoilMVGVSRLLVAFAVASLLSQPLYADVIPTRRAADSSDSSAKVESRLVQLGLTAEAAKDQVRDLTDDQTKYFAAASERIQLVGQENWGGQSDNLWWEWVFGILALGAVGAVIVIALND
Ga0314785_018396_89_4393300034479SoilMVGASRLLVALALVGLFTQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTSDAARDQVQQLTVEQTKYFAGNSDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0314781_140381_3_2963300034660SoilHLYADVIPSRRAADTSDSSAKVQARLVELGLTADAAKDQVQKLTVEQTKYFAGNSDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0314783_059406_323_6733300034662SoilMVGASRLLVALAVAGLFAQPLYADVIPTRRAGDTKESSQKVQTRLVDLGMTADAAKDQVSQLTAEQTKYFAGNPGRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0314786_075923_228_5783300034664SoilMVGASRLLVALALVGLFVQPLYADVIPTRRAGDAKESSQKVESRLVTLGMTADAARDQVRQLTVEQTKYFAGNSDRIQLVGQGENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0314787_072178_146_4963300034665SoilMVGASRLLVALALVGLFVQPLYADVIPTRRAGDTKESTQKVQSRLVELGMTADAAKDQVSQLNVDQTKYFAGNPDRIQLVAQAENFGGQSDNLWWEWVFGIAMLAVGVGVIIIVAD
Ga0314793_050241_310_6603300034668SoilMVAVSRLLVALAMAGLFTQPIYADVIPTRRAADTTESAKKVETRLVQLGVAADAAKDQIQKLTDDQTNYFAGNPERIQLVGQENWGGQSDNLWWEWLFGIAALAGAAVVLIIALND


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.