Metagenome / Metatranscriptome Family F086756

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086756
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	66 residues
Representative Sequence	MRQNEGLQRAAAVLLQATLAMGFLTGCGVAPRPPDGTLDLPHFASQAPSKEMEPSPRLSVSAETIWAQ
Number of Associated Samples	95
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.68 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.909 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.454 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (44.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 26.04% β-sheet: 0.00% Coil/Unstructured: 73.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13545	HTH_Crp_2	6.36
PF00072	Response_reg	5.45
PF00166	Cpn10	5.45
PF07238	PilZ	3.64
PF00118	Cpn60_TCP1	2.73
PF01925	TauE	1.82
PF01070	FMN_dh	1.82
PF00132	Hexapep	0.91
PF08530	PepX_C	0.91
PF09360	zf-CDGSH	0.91
PF09924	LPG_synthase_C	0.91
PF04239	DUF421	0.91
PF00572	Ribosomal_L13	0.91
PF13683	rve_3	0.91
PF08352	oligo_HPY	0.91
PF13371	TPR_9	0.91
PF01471	PG_binding_1	0.91
PF12770	CHAT	0.91
PF00440	TetR_N	0.91
PF00106	adh_short	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	5.45
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	2.73
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	1.82
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.82
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	1.82
COG0102	Ribosomal protein L13	Translation, ribosomal structure and biogenesis [J]	0.91
COG2323	Uncharacterized membrane protein YcaP, DUF421 family	Function unknown [S]	0.91
COG2936	Predicted acyl esterase	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
All Organisms	root	All Organisms	49.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
cellular organisms	root	All Organisms → cellular organisms	49.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	20.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	20.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.82 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	9.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	9.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.91 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.91 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.91 %
Salinispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Sphingomonas sp. AX6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. AX6	0.91 %
Salinispora pacifica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora pacifica	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10337926	Not Available	730	Open in IMG/M
3300005206\|Ga0068995_10013073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1186	Open in IMG/M
3300005218\|Ga0068996_10059523	Not Available	771	Open in IMG/M
3300005289\|Ga0065704_10465431	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	693	Open in IMG/M
3300005294\|Ga0065705_10553906	Not Available	730	Open in IMG/M
3300005295\|Ga0065707_10395924	All Organisms → cellular organisms → Bacteria → Acidobacteria	841	Open in IMG/M
3300005440\|Ga0070705_100366135	Not Available	1056	Open in IMG/M
3300005444\|Ga0070694_101376286	Not Available	595	Open in IMG/M
3300005467\|Ga0070706_100043007	All Organisms → cellular organisms → Bacteria → Proteobacteria	4174	Open in IMG/M
3300005467\|Ga0070706_100966696	Not Available	786	Open in IMG/M
3300005468\|Ga0070707_101876417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Salinispora → Salinispora pacifica	566	Open in IMG/M
3300005542\|Ga0070732_10820091	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005549\|Ga0070704_100085608	Not Available	2333	Open in IMG/M
3300006047\|Ga0075024_100005942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4917	Open in IMG/M
3300006047\|Ga0075024_100074194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1455	Open in IMG/M
3300006845\|Ga0075421_100590089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1307	Open in IMG/M
3300006847\|Ga0075431_101041225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	784	Open in IMG/M
3300007265\|Ga0099794_10000412	All Organisms → cellular organisms → Bacteria	14391	Open in IMG/M
3300009038\|Ga0099829_10000437	All Organisms → cellular organisms → Bacteria	22000	Open in IMG/M
3300009038\|Ga0099829_10261251	Not Available	1414	Open in IMG/M
3300009090\|Ga0099827_10160527	Not Available	1846	Open in IMG/M
3300009803\|Ga0105065_1013354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	892	Open in IMG/M
3300009804\|Ga0105063_1050824	Not Available	593	Open in IMG/M
3300009806\|Ga0105081_1017025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	863	Open in IMG/M
3300009808\|Ga0105071_1020398	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	945	Open in IMG/M
3300009812\|Ga0105067_1039900	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300009814\|Ga0105082_1003609	All Organisms → cellular organisms → Bacteria → Proteobacteria	1962	Open in IMG/M
3300009816\|Ga0105076_1132024	Not Available	503	Open in IMG/M
3300011270\|Ga0137391_10126675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2218	Open in IMG/M
3300011271\|Ga0137393_10190301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1728	Open in IMG/M
3300011443\|Ga0137457_1314347	Not Available	534	Open in IMG/M
3300012035\|Ga0137445_1111504	Not Available	556	Open in IMG/M
3300012096\|Ga0137389_10359385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1240	Open in IMG/M
3300012174\|Ga0137338_1016256	All Organisms → cellular organisms → Bacteria → Proteobacteria	1427	Open in IMG/M
3300012203\|Ga0137399_10054498	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300012203\|Ga0137399_10377463	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1180	Open in IMG/M
3300012205\|Ga0137362_10964523	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	727	Open in IMG/M
3300012361\|Ga0137360_11777832	Not Available	522	Open in IMG/M
3300012362\|Ga0137361_10506163	Not Available	1109	Open in IMG/M
3300012918\|Ga0137396_10171347	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1587	Open in IMG/M
3300012918\|Ga0137396_10512117	Not Available	889	Open in IMG/M
3300012929\|Ga0137404_11849186	Not Available	562	Open in IMG/M
3300014870\|Ga0180080_1104357	Not Available	505	Open in IMG/M
3300014884\|Ga0180104_1168687	Not Available	652	Open in IMG/M
3300017997\|Ga0184610_1079482	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300018031\|Ga0184634_10200861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	907	Open in IMG/M
3300018052\|Ga0184638_1300524	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300018052\|Ga0184638_1333458	Not Available	510	Open in IMG/M
3300018056\|Ga0184623_10301993	Not Available	723	Open in IMG/M
3300018056\|Ga0184623_10428653	Not Available	576	Open in IMG/M
3300018075\|Ga0184632_10147935	Not Available	1036	Open in IMG/M
3300018075\|Ga0184632_10172601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	954	Open in IMG/M
3300018076\|Ga0184609_10059178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1652	Open in IMG/M
3300018076\|Ga0184609_10303837	Not Available	746	Open in IMG/M
3300018076\|Ga0184609_10363272	Not Available	675	Open in IMG/M
3300018084\|Ga0184629_10236088	Not Available	953	Open in IMG/M
3300018429\|Ga0190272_10369482	Not Available	1153	Open in IMG/M
3300019249\|Ga0184648_1300650	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300019259\|Ga0184646_1380311	Not Available	534	Open in IMG/M
3300019487\|Ga0187893_10200983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1533	Open in IMG/M
3300019877\|Ga0193722_1115284	Not Available	626	Open in IMG/M
3300019879\|Ga0193723_1053186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1188	Open in IMG/M
3300019879\|Ga0193723_1191615	Not Available	517	Open in IMG/M
3300019882\|Ga0193713_1014807	All Organisms → cellular organisms → Bacteria	2339	Open in IMG/M
3300019883\|Ga0193725_1011422	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300019886\|Ga0193727_1193320	Not Available	514	Open in IMG/M
3300019998\|Ga0193710_1008409	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1037	Open in IMG/M
3300020003\|Ga0193739_1023201	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1617	Open in IMG/M
3300020004\|Ga0193755_1104294	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300020004\|Ga0193755_1180005	Not Available	620	Open in IMG/M
3300020063\|Ga0180118_1059224	Not Available	1091	Open in IMG/M
3300021073\|Ga0210378_10122784	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300021081\|Ga0210379_10386809	Not Available	617	Open in IMG/M
3300021090\|Ga0210377_10025218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4307	Open in IMG/M
3300021972\|Ga0193737_1024473	Not Available	854	Open in IMG/M
3300022694\|Ga0222623_10145512	Not Available	923	Open in IMG/M
3300022756\|Ga0222622_10505679	Not Available	864	Open in IMG/M
3300025324\|Ga0209640_10126636	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2193	Open in IMG/M
3300025910\|Ga0207684_10074629	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2881	Open in IMG/M
3300025922\|Ga0207646_11632800	Not Available	555	Open in IMG/M
3300026285\|Ga0209438_1057502	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300026340\|Ga0257162_1000105	All Organisms → cellular organisms → Bacteria → Proteobacteria	6220	Open in IMG/M
3300026354\|Ga0257180_1039515	Not Available	656	Open in IMG/M
3300026489\|Ga0257160_1051177	Not Available	714	Open in IMG/M
3300026496\|Ga0257157_1087367	Not Available	541	Open in IMG/M
3300026514\|Ga0257168_1115331	Not Available	598	Open in IMG/M
3300026551\|Ga0209648_10792191	Not Available	518	Open in IMG/M
3300027013\|Ga0209884_1030993	Not Available	563	Open in IMG/M
3300027645\|Ga0209117_1027424	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300027681\|Ga0208991_1067073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1082	Open in IMG/M
3300027815\|Ga0209726_10035671	All Organisms → cellular organisms → Bacteria → Proteobacteria	3741	Open in IMG/M
3300027915\|Ga0209069_10048222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2001	Open in IMG/M
3300027947\|Ga0209868_1004218	Not Available	1327	Open in IMG/M
3300027952\|Ga0209889_1037474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. AX6	1041	Open in IMG/M
3300028536\|Ga0137415_10249393	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1584	Open in IMG/M
3300028536\|Ga0137415_10275478	Not Available	1488	Open in IMG/M
3300028792\|Ga0307504_10220168	Not Available	682	Open in IMG/M
3300028828\|Ga0307312_10334878	Not Available	989	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1039932	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	984	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1055202	Not Available	839	Open in IMG/M
3300031720\|Ga0307469_11932695	Not Available	572	Open in IMG/M
3300032180\|Ga0307471_100738489	Not Available	1150	Open in IMG/M
3300033233\|Ga0334722_10052271	All Organisms → cellular organisms → Bacteria	3220	Open in IMG/M
3300033433\|Ga0326726_10022304	All Organisms → cellular organisms → Bacteria	5504	Open in IMG/M
3300034643\|Ga0370545_049589	Not Available	812	Open in IMG/M
3300034773\|Ga0364936_022282	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.55%
Host-Associated	Host-Associated	5.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.45%
Aquatic	Environmental → Aquatic	29.09%
Plants	Host-Associated → Plants	5.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.73%
Sediment	Environmental → Aquatic → Sediment	20.00%
Freshwater	Environmental → Aquatic → Freshwater	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%
Marine	Environmental → Aquatic → Marine	1.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.82%
Peat	Environmental → Terrestrial → Peat	0.91%
Cave	Environmental → Terrestrial → Cave	0.91%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.00%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Sand	Environmental → Terrestrial → Soil → Sand	10.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.82%
Lake	Environmental → Aquatic → Freshwater → Lake	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	10.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.91%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	9.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.27%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.45%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014870	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027947	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034773	Sediment microbial communities from East River floodplain, Colorado, United States - 4_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_103379262	3300001661	Forest Soil	MRQHECLQRAAAGLLQATLAMGFLIGCGVATRPADGTLDLPHFASQAPSKEMESSPRLSVSAEAIWAQ*
Ga0063356_1004356644	3300004463	Arabidopsis Thaliana Rhizosphere	VNSHVAAVLLVTALAMAILVGCGVTPRPADGIRDLPHFANQAPSRETDPSPR*
Ga0068995_100130731	3300005206	Natural And Restored Wetlands	MRPNGRLQHAAAVLLQATLAMGILVACGVAPRPADGTLDLPHFANQAPSKEMEPSPRLSH
Ga0068996_100595233	3300005218	Natural And Restored Wetlands	MRPNGRLQHAAAVLLQATLAMGILVACGVAPRPADGTLDLPHFANQAPSKEMEPSPRLS
Ga0065704_104654312	3300005289	Switchgrass Rhizosphere	AAAVLLQTTLAMGILVGCVVPPRPADGTPDLPHFANQAPSREMEPSPHLSVERETGFKNGW*
Ga0065705_105539061	3300005294	Switchgrass Rhizosphere	SEPDDETEGSLQRAAVALLQATLAMGILIGCRVATRPSDGTLDLPHFAYQAPALGMDPSPRLSVATEAIWAQ*
Ga0065707_102531644	3300005295	Switchgrass Rhizosphere	MRRGGGLQRAAAVLLQTTLAMGILVGCVVPPRPADGTPDLPHFAN
Ga0065707_103959243	3300005295	Switchgrass Rhizosphere	MRRDGVLQRAAVVLLQVTLAMGILIGCGAATRPADGTLDLPHFAYQAPPMGMEPSPRLSIATEAIWAQ*
Ga0070705_1003661352	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRQHEGLRRAAAVLLQATLVVGLLSGCGVAARPADDGALDLPHFANQAPSKEMGPSPRLSVS
Ga0070694_1013762862	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRRDGGLQRAAVVLLQATLAMGILIGCGAATRPADGTLDLPHFAYQAPSVGMEPSPRLSIATEAIWAQ*
Ga0070706_1000430072	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRPNEGIRRAAVVFLQATLVVGFLSGCMVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWIP*
Ga0070706_1009666962	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRPNEGIRRAAVVFLQATVVVGFLSGCVVTSRPADGALDLPHFASQAPKEKGSSPGLSVSAEAIW
Ga0070707_1018764171	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRQHEGIQRAAASLLRATLVVGLLTGCGVAARPDDGARDLPHFASQAPSKEMGPSPRLSVSAEAGPVISGAPRSRGWDWSAGDG
Ga0070732_108200912	3300005542	Surface Soil	LLQATLTVGFLAGCGVATRPADGTLDLPHFASQAPSKQIEPSPSLTVSAEAIWVQ*
Ga0070704_1000856081	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRRDGGLQRAAVVLLQATLAMGILIGCGAATRPADGTLDLPHFAYQAPSVGMEPSPRSSIATEAIWAQ*
Ga0075024_1000059421	3300006047	Watersheds	MRKGRGFQGAATVLLQAALAVGCLAGCGVATRPPAGILDLPHFANQAPSKEIKGSPAVTVSAETIWVQ*
Ga0075024_1000741941	3300006047	Watersheds	MRQHEGLQRAAAVLLQATLAMGFLIGCGVATRPADDGALDLPHFASQAPSKEMGPSPRLSSRASRGLSSSIG
Ga0075421_1005900891	3300006845	Populus Rhizosphere	RDEGLQRAAAVLLQATLAMGLLIGCGAATHPPDGTLDLPHFASQAGSEAMNPSHRSSGSVEAIPVR*
Ga0075431_1010412251	3300006847	Populus Rhizosphere	MRRDEGLQRAAAVLLQATLAMGLLIGCGAATHPPDGTLDLPHFASQAGSEAMNPSHRSSGSVEAIPVR*
Ga0099794_100004124	3300007265	Vadose Zone Soil	MRPNEGIRRAAVVFLQATLVVGSLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWVP*
Ga0099829_100004378	3300009038	Vadose Zone Soil	MRQNEGLQRAAAVLVQATLAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAQ*
Ga0099829_102612511	3300009038	Vadose Zone Soil	MRQHEGIQRAAAVLLQATLVVGFLSGCGVAPRPADDGALDLPHFASQVPSKEMGPS
Ga0099827_101605273	3300009090	Vadose Zone Soil	MIAGLKQRQRSESAMRQDGGLQRAAVGLLQATLAIGILIGCGVATRPPDGTLDLPHFANQAPSTGMEPSPRLSVATEAIRAQ*
Ga0105065_10133542	3300009803	Groundwater Sand	MRQNEGLQRAAAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGHGVSRTWVQ*
Ga0105063_10508241	3300009804	Groundwater Sand	RQNEGLQRAVAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMELPPRLSVFAAELARDVGHGVSRTWVQ*
Ga0105081_10170252	3300009806	Groundwater Sand	MRQNEGLQRAAAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMELPPRLSVFAAELASDVGHGVSRTWVQ*
Ga0105071_10203981	3300009808	Groundwater Sand	MRQHEGIQRAAAVLLQATLVMGFLSGCGVATRQDDGARDLPHFASQAPSKEVDPSPRLTVSPETIWIQ*
Ga0105067_10399002	3300009812	Groundwater Sand	EGLQRAAAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGYGVSRTWVQ*
Ga0105082_10036094	3300009814	Groundwater Sand	MRQNEGLQRAAAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGQRRL*
Ga0105076_11320241	3300009816	Groundwater Sand	MRQNEGLQRAVAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGYGVSRT
Ga0137391_101266752	3300011270	Vadose Zone Soil	MRQHEGIQRAAAVLLQATLVVGFLSGCGVAPRPADDGALDLPHFASQVPSKEMGPSPRLSVSAEAIWAQ*
Ga0137393_101903012	3300011271	Vadose Zone Soil	MRPNEGIRRAAVVFLQATLVVGFLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWVP*
Ga0137457_13143472	3300011443	Soil	MRQNEGLQRAAAVLVQAALAMGFLTGCGVAPRPPDGTLDLPYFASQAPSKAMDPSPRLSVSAEAIWAQ*
Ga0137445_11115041	3300012035	Soil	MRQNEGLQRAAAVLLPATLALGLLTGCGVAPRPPDGTLDLPHFASQAPPKEMDPSTRPSVSTEAIWAQ*
Ga0137389_103593852	3300012096	Vadose Zone Soil	MRPNEGIRRAAVVFLQATLVVGFLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWIP*
Ga0137338_10162562	3300012174	Soil	MRQNEGLQRATAVLLPATLALGLLIGCGAATRPPDGTLDLPHFASRAPSKAMQPSPRSSVSAEAIWAQ*
Ga0137399_100544981	3300012203	Vadose Zone Soil	MRQDGGLQRAAVVLLQATLAMGILIGCGVAARPVDGTLDLPHFANQAPAKGMEPSPRLSVATEAIWAQ*
Ga0137399_103774631	3300012203	Vadose Zone Soil	EGLQRAAAGLLQATLAMGFLIGCGVATRPADGTLDLPHFASQAPSKEMESSPRLSVAAEAIWAQ*
Ga0137362_109645232	3300012205	Vadose Zone Soil	MRQHEGLRRAAAVLLQATLVVGLLSGCGVAARPDDGARDLPHFASQAPSKEMGPSPRL
Ga0137360_117778321	3300012361	Vadose Zone Soil	MRPHEGLRRAAAVLLQATLVVGLLSGCGVAARPDDGARDLPHFASQAPSKEMGPSP
Ga0137361_105061631	3300012362	Vadose Zone Soil	MRQPEGLRCAAAVLLQATLAVGLLSGCGVAARPDDGARDLPHFASQAPSKEMGPSPRLSVSAEAGPVISGAPRSRGWDWSAG
Ga0137396_101713473	3300012918	Vadose Zone Soil	MRQHEGLRRAAAVLLQATLVVGWLSGCGVAARPDDGARDLPHFASQAPSKEMGPSPRLSVSAEAGPVISGAPRSRG*
Ga0137396_105121172	3300012918	Vadose Zone Soil	MRQHEGLQRAAAGLLQATLAMGFLIGCGVATRPADGTLDLPHFASQAPSKEMESSPRLSVAAEAIWAQ*
Ga0137404_118491861	3300012929	Vadose Zone Soil	MRQDGGLQRAAVVLLQATLAMGILIGCGVAARPVDGTLDLPHFANQAPAKGLEPSPRLSVATEAIWAQ*
Ga0157373_111607661	3300013100	Corn Rhizosphere	LVVNSHVAAVLLVTALAMAILVGCGVTPRPADGIRDLPHFANQAPSRETDPSPR*
Ga0180080_11043571	3300014870	Soil	MRQNEGLQRAAAVLLPATLALGLLTGCGVAPRPPDGTLDLPYFASQAPSKAMDPSPRLSVSAEAIWAQ*
Ga0180104_11686872	3300014884	Soil	MRQNEGLQRAAAVLLQAALAMGFLTGCGVAPRPPDGTLDLPYFASQAPSKALDPSPRLSVSAEAIWAQ*
Ga0184610_10794822	3300017997	Groundwater Sediment	MRQNEGLQRAAAVLLQAALAMGFLTGCGVAPRPPDGTLDLPYFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0184634_102008612	3300018031	Groundwater Sediment	MRQNEGLQRAAAVLLQATLAMGFLTGCGVAPRPPDGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAP
Ga0184638_13005241	3300018052	Groundwater Sediment	MRQNEGLQRAAAVLLQATLAIALLIGCGVATRPPDGTLDLPHFASQAPSKAMDPSPRLNVSAEAIWAQ
Ga0184638_13334581	3300018052	Groundwater Sediment	MRQNEGLQRAAAVLLQATLAMGFLTGCGVAPRPPDGTLDLPHFASQAPSKTISAEAIWAQ
Ga0184623_103019931	3300018056	Groundwater Sediment	MRQNEGLQRAAGVLLQAALAMGFLTGCGVAPRPPDGTLDLPYFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0184623_104286531	3300018056	Groundwater Sediment	MRQNEGLQRAAAVLVQAALAMGFLTGCGVVPRPPDGTLDLPYFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0184632_101479353	3300018075	Groundwater Sediment	MRQNEGLQRAAAVLLQAALAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0184632_101726012	3300018075	Groundwater Sediment	GLQRASAVLLQATLAMGFLVGCGVATRPADGTLDLPHFARQAPSKEVESSPRLSVSAEAIWAQ
Ga0184609_100591782	3300018076	Groundwater Sediment	MRQHEGLQRASAVLLQATLAMGFLVGCGVATRPADGTLDLPHFARQAPSKDVESSPRLSVSGEAIWSQ
Ga0184609_103038371	3300018076	Groundwater Sediment	MRQNEGLQRAAAVLVQATLAMGFLTGCGVAPRPPDGTLDLPYFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0184609_103632722	3300018076	Groundwater Sediment	MRRNEGLQRTAAGLVQAALVTGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSRRLSVSAEAIWAQ
Ga0184629_102360881	3300018084	Groundwater Sediment	MRQNEGLQRAAAVLLQATLAMGFLTGCGVAPRPPDGTLDLPHFASQAPSKAMDPPPRLSVSAEAIWAQ
Ga0190272_103694824	3300018429	Soil	MRQNEGLQRAAAVLLQAALAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDTSPRSSVSAEAIWAQ
Ga0184648_13006502	3300019249	Groundwater Sediment	MRQNEGLQRAAAVLVQATLAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPPPRLSVSAEAIWAQ
Ga0184646_13803111	3300019259	Groundwater Sediment	MRQNEGLQRAAAVLVQAALAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0187893_102009832	3300019487	Microbial Mat On Rocks	MRRNDGLRRAAAVVLQATLAIGLLIGCAATHPPDGTLDLPHFARQAPSEAMSPSHRSRVSAEANSAR
Ga0193722_11152841	3300019877	Soil	MRPNEGIWRAAVVFLQATLVVGFLSGCVVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEDIWVP
Ga0193723_10531862	3300019879	Soil	MRQDGRLQHAATVLLQATLAIGILVGCGVARPPDGHLDLPHFANHAPSKEWTLVH
Ga0193723_11916151	3300019879	Soil	MRQNEGLQRAAAVLVQATLAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0193713_10148073	3300019882	Soil	MLLQATLAMGILIGCGAATRPADGTFDLPHFANQAPSMGMEPSPRLSVATEAIWAQ
Ga0193725_10114223	3300019883	Soil	MRQDGGLQRAAVMLLQATLAMGILIGCGAATRPADGTFDLPHFANQAPSMGMEPAPRLSVATEAIWAQ
Ga0193727_11933201	3300019886	Soil	MRQDGGLQRAAVMLLQATLAMGILIGCGAATRPADGTFDLPHFANQAPMGMEPSPRLSVATEAIWAQ
Ga0193710_10084093	3300019998	Soil	MRPDGRLQHAATVLLQATLAIGILVGCGVARPPDGHLDLPHFANHAPSKEWTLVH
Ga0193739_10232014	3300020003	Soil	MRRNEGLQRAAAVLVQAALVMGFLTGCGVVPRPPDGTLDLPYFASQAPSKAMDPSRRSSVSAEAI
Ga0193755_11042943	3300020004	Soil	MRQHEGLQRVAAVLLQATLAMGFLFGCGVATRPPDGTLDLPHFASQVPSKATEPLTLVPKRDKS
Ga0193755_11800051	3300020004	Soil	MRQHEGLQRTAAGLLQATLVMGFLIGCGVATRPADGTLDLPHFASQAPSKEMESSPRLSVSAEAIWAQ
Ga0180118_10592241	3300020063	Groundwater Sediment	MRQYECLQRAAAGFLQATLVMGFLIGCGVATRPPDGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAQ
Ga0210378_101227843	3300021073	Groundwater Sediment	MRQNEGLQRAAAVLVQAALAMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSRRLSVSAEAIWAQ
Ga0210379_103868091	3300021081	Groundwater Sediment	LLLATLTMGFLTGCGVAPRPPDGTLDLPHFASQAPSKEMGPSPRLSVSAEAIWAQ
Ga0210377_100252184	3300021090	Groundwater Sediment	MRQNEGLQRAAAVLLQGTLALGLLVGCGATPRPPDGTLDLPYFASHVPSKPMDPSPRSSVSAEAIWAQ
Ga0193737_10244732	3300021972	Soil	MRRNEGLQRAAAVLVQAALVMGFLTGCGVVPRPPDGTLDLPYFASQAPSKAMDPSRR
Ga0222623_101455123	3300022694	Groundwater Sediment	MRRNEGLQRAAAGLVQAALVMGFLTGCGVVPRPPDGTLDLPHFASQAPSKAMDPSRRLSVSAEAIWAQ
Ga0222622_105056793	3300022756	Groundwater Sediment	MRQDGGLQRCRQRAAVVLLQATLVMGILIGCGVAARPVDGTLDLPHFANQAPAMGMETF
Ga0209640_101266362	3300025324	Soil	MRQHEGLQRAAAGLLQATLAMGFLIGCGVATRQTDGTLDLPHFASQAPSREMEPSPRLSVSAEAIWAQ
Ga0207684_100746292	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRPNEGIRRAAVVFLQATLVVGFLSGCMVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWIP
Ga0207646_116328001	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRQHEGIQRAAASLLRATLVVGLLTGCGVAARPDDGARDLPHFASQAPSKEMGPSPRLSVSAEAGPVISV
Ga0207687_102843862	3300025927	Miscanthus Rhizosphere	MRRLRRAAAGLLQTTLAMGILVGCVGAPRPGNDIRDLPHIANQAPSREMEP
Ga0209438_10575022	3300026285	Grasslands Soil	MRPNEGIRRAAVVFLQATLVVGSLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSV
Ga0257162_10001054	3300026340	Soil	MRPNEGIRRAAVVFLQATLVVGFLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWVP
Ga0257180_10395151	3300026354	Soil	MRPNEGIRRAAVVFLQATLVVGSLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWVP
Ga0257160_10511771	3300026489	Soil	MRPNEGIRRAAVVFLQATLVVGSLSGCAVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEA
Ga0257157_10873671	3300026496	Soil	MRQPEGLRRAAAVLLQATVVVGLLSGCGVAARPDDGARDLPHFASQAPSKEMGPSPR
Ga0257168_11153311	3300026514	Soil	MRQPEGLRCAAAVLLQATLAVGLLSGCGVAARPDDGARDLPHFASQAPSKEMGPSPRLSVSAEAGPVISGAPRSRGWG
Ga0209648_107921911	3300026551	Grasslands Soil	MRQRGGFQRAAAVLLQATLAVGFLAGCGVATRPADGTLDLPHFASPAPSKEIEPSPPLIVSVEAIWV
Ga0209884_10309931	3300027013	Groundwater Sand	SAIRQNEGLQRAVAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGYGVSRTWVQ
Ga0209117_10274242	3300027645	Forest Soil	MRPNEGIRRAAVVFLQATLVVGFLSGCVVASRPADGALDLPHFASQAPSKEKGSSPGLSVSAEAIWVP
Ga0208991_10670733	3300027681	Forest Soil	MRQHEGLQRAAAGLLQATLAMGFLIGCGVATRPADGTLDLPHFASQAPSKEMESSPRLSVSAEAIWAQ
Ga0209726_100356717	3300027815	Groundwater	MRQNEGLQRAAAVLLQATLAMGFLTGCGVAPRPPDGTLDLPHFASQAPSKEMEPSPRLSVSAETIWAQ
Ga0209069_100482222	3300027915	Watersheds	MRQHEGLQRAAAVLLQATLAMGFLIGCGVATRPADDGALDLPHFASQAPSKEMEPSARLSVSAEAIWAQ
Ga0209868_10042182	3300027947	Groundwater Sand	MRQNEGLQRAAAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGYGVSRTWVQ
Ga0209889_10374743	3300027952	Groundwater Sand	MRQNEGLQRAAAVLLQATLAMGFLTGCGVATRQPDGTLDLPHFASQAPSKEMEPPPRLSVSAAELATDVGYGVSRT
Ga0137415_102493932	3300028536	Vadose Zone Soil	MRQHEGLQRAAAGLLQATLAMGFLIGCGVATRPADGTLDLPHFASQAPSKEMESSPRLSVAAEAIWAQ
Ga0137415_102754781	3300028536	Vadose Zone Soil	MRQDGGLQRAAVVLLQATLAMGILIGCGVAARPVDGTLDLPHFANQAPAKGMEPSPRLSVATEAIWAQ
Ga0307504_102201681	3300028792	Soil	MRPDGRLQHAATVLLQATLAIGILVGCGVARPPDGHLDLPHFASHAPSK
Ga0307312_103348781	3300028828	Soil	MRQHECLQRAAAGLLQATLAMGFLIGCGVATRPADGTLDLPHFASQAPSKAMDPSPRLSVSAEAIWAQ
(restricted) Ga0255311_10399321	3300031150	Sandy Soil	MRRDGGLQRAAVVLLQTTLAMGILVGCGVAPRPADGTLDLPHIANQAPSKEMEPSPRLSAARETIWAQ
(restricted) Ga0255311_10552022	3300031150	Sandy Soil	MRRDGGLQRAAAVLLQAALAMGILVGCVGAPRPADGTLDLPHFANRAPSKDIGFKNGW
Ga0307469_119326951	3300031720	Hardwood Forest Soil	MRPDGRLPHAATVLLQATLAIGILVGCGVARPPDGHLDLPHFANHAPSKEWTLVH
Ga0307471_1007384893	3300032180	Hardwood Forest Soil	MRRDGGLQRATVVLLQTTLVMGILVGCVAVPRPADGIRDLPHIANQAPSPHVSVARETIWTQ
Ga0334722_100522711	3300033233	Sediment	MRRDGGLQRAAAVLLQTALAMGILVGCAGAPRPADGTLDLPHFANQAPSKDTGFKKGR
Ga0326726_100223046	3300033433	Peat Soil	MRQRGGFQRAAAVLLQATLAVGFLAGCGVATRPADGTLDLPHFASQAPSKQIEPSYPLTVSAEAIWVQ
Ga0370545_049589_546_752	3300034643	Soil	MRQNEGLQRAAVVLLLATLTMGFLTGCGVAPRPPDGTLDLPHFASQAPSKEMGPSPRLSVSAEAIWAQ
Ga0364936_022282_553_759	3300034773	Sediment	MRQNEGLQRAAAVLLQAALAMGFLTGCGVAPRPPDGTLDLPYFASQAPSKALDPSPRLSVSAEAIWAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters