Metagenome Family F086722

Basic Information
Family ID	F086722
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	58 residues
Representative Sequence	VQTADALVQVFLTHNINVSTDTIMCSSSIDFAEEEGFATDACAHNIIDEAFETLA
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.96 %
% of genes near scaffold ends (potentially truncated)	93.64 %
% of genes from short scaffolds (< 2000 bps)	88.18 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (75.455 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (24.546 % of family members)
Environment Ontology (ENVO)	Unclassified (32.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (91.818 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. 1ACM2_10720991 2JGI26260J51721_10406281 3JGI26082J51739_100695921 4Ga0066611_103197692 5Ga0070743_101642532 6Ga0075476_101990821 7Ga0102880_10717743 8Ga0102820_10235341 9Ga0102821_10284376 10Ga0102821_10481584 11Ga0102821_11359101 12Ga0102824_10555813 13Ga0102823_11616622 14Ga0099850_13527833 15Ga0102963_10396346 16Ga0115550_12797941 17Ga0102814_101107051 18Ga0102812_100931211 19Ga0115570_103695141 20Ga0115570_104917642 21Ga0117790_10693661 22Ga0181391_10572163 23Ga0181390_10560281 24Ga0181431_11151321 25Ga0181431_11333851 26Ga0181433_10539141 27Ga0181433_11489852 28Ga0181399_10358504 29Ga0181389_10782694 30Ga0181392_11079111 31Ga0187219_11572123 32Ga0181400_10930241 33Ga0181411_10335831 34Ga0181422_11115243 35Ga0181422_12071722 36Ga0181410_12099721 37Ga0181423_12311543 38Ga0181379_10964041 39Ga0181565_101892801 40Ga0181577_105818283 41Ga0181580_104267751 42Ga0181589_105783921 43Ga0181579_101342401 44Ga0181579_102560581 45Ga0181601_103624073 46Ga0181572_103000941 47Ga0181560_101883042 48Ga0181592_107285741 49Ga0181593_100695961 50Ga0181591_103325101 51Ga0181591_107649261 52Ga0181554_13120172 53Ga0181575_101889064 54Ga0181573_104974732 55Ga0206131_102371623 56Ga0213865_102885421 57Ga0213866_103221213 58Ga0213866_103530761 59Ga0222717_100918106 60Ga0222718_100195491 61Ga0222718_103634722 62Ga0222718_106188182 63Ga0222715_102329624 64Ga0222719_1000114061 65Ga0222719_100249981 66Ga0255781_103992402 67Ga0255780_101728521 68Ga0255770_104971671 69Ga0255782_102452481 70Ga0255784_1002276010 71Ga0233432_102616151 72Ga0255760_100669776 73Ga0255760_102746073 74Ga0255766_103223353 75Ga0255776_104540213 76Ga0255772_102718673 77Ga0255772_105591732 78Ga0228636_10522421 79Ga0228636_10953171 80Ga0233402_11002191 81Ga0228678_10702252 82Ga0228675_10441804 83Ga0228676_10598631 84Ga0233438_102999671 85Ga0233444_1002558214 86Ga0233444_101318411 87Ga0228631_11287972 88Ga0244777_105748593 89Ga0244775_102219981 90Ga0244775_104930191 91Ga0228662_10554391 92Ga0233396_10834993 93Ga0209136_11152012 94Ga0209532_11634512 95Ga0209771_10333215 96Ga0209534_102698063 97Ga0209961_10304621 98Ga0209929_11546322 99Ga0208673_10145176 100Ga0208804_10248412 101Ga0208897_10844161 102Ga0209037_10894493 103Ga0208304_103004791 104Ga0208305_100377391 105Ga0228674_10831411 106Ga0228608_10993421 107Ga0228640_10167071 108Ga0228646_10334836 109Ga0228615_10634071 110Ga0315320_101255148
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. 1ACM2_10720991 2JGI26260J51721_10406281 3JGI26082J51739_100695921 4Ga0066611_103197692 5Ga0102880_10717743 6Ga0102824_10555813 7Ga0099850_13527833 8Ga0102963_10396346 9Ga0115550_12797941 10Ga0115570_103695141 11Ga0117790_10693661 12Ga0222719_1000114061 13Ga0255780_101728521 14Ga0255776_104540213 15Ga0208673_10145176
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. 1ACM2_10720991 2JGI26260J51721_10406281 3Ga0066611_103197692 4Ga0102880_10717743 5Ga0102821_11359101 6Ga0099850_13527833 7Ga0115550_12797941 8Ga0115570_103695141 9Ga0117790_10693661 10Ga0181399_10358504 11Ga0181422_12071722 12Ga0181580_104267751 13Ga0213866_103221213 14Ga0213866_103530761 15Ga0222717_100918106 16Ga0222718_100195491 17Ga0255780_101728521 18Ga0233432_102616151 19Ga0255760_100669776 20Ga0255776_104540213 21Ga0255772_102718673 22Ga0233444_101318411 23Ga0244775_104930191 24Ga0209771_10333215 25Ga0209037_10894493
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.17% β-sheet: 0.00% Coil/Unstructured: 57.83%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00004	AAA	1.82
PF02348	CTP_transf_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	24.55 %
Unclassified	root	N/A	75.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	8.18 %
Unclassified	root	N/A	75.45 %
Viruses	superkingdom	All Organisms → Viruses	16.36 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.91 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	2.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.91 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	2.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	2.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.91 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.91 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.91 %
Mamiellophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae	2.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.91 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.91 %
Mamiellales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales	2.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Bathycoccaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae	2.73 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Bathycoccus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus	2.73 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Bathycoccus prasinos	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	2.73 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.45 %
Unclassified	root	N/A	75.45 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.91 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300023109\|Ga0233432_10261615	Not Available	821	Open in IMG/M
(restricted) 3300024255\|Ga0233438_10299967	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10025582	All Organisms → Viruses → Predicted Viral	4028	Open in IMG/M
(restricted) 3300024264\|Ga0233444_10131841	Not Available	1243	Open in IMG/M
3300001834\|ACM2_1072099	Not Available	552	Open in IMG/M
3300003580\|JGI26260J51721_1040628	Not Available	771	Open in IMG/M
3300003617\|JGI26082J51739_10069592	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos	989	Open in IMG/M
3300004277\|Ga0066611_10319769	Not Available	513	Open in IMG/M
3300005941\|Ga0070743_10164253	Not Available	735	Open in IMG/M
3300006867\|Ga0075476_10199082	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.09%
Fish	Host-Associated → Fish	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	96.36%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.73%
Skin	Host-Associated → Fish → Skin	0.91%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	17.27%
Epidermal Mucus	Host-Associated → Fish → Skin → Epidermal Mucus	0.91%
Inlet	Environmental → Aquatic → Marine → Inlet	3.64%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	42.73%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.82%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.91%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.64%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.73%
Strait	Environmental → Aquatic → Marine → Strait	15.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified	10.91%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	12.73%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	24.55%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	17.27%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	15.45%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	10.91%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.91%
Unclassified	Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.82%
Epidermal Mucus	Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus	0.91%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	12.73%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	3.64%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	6.36%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.55%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.91%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.91%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.73%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.82%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.82%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	24.55%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	15.45%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	15.45%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.64%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.91%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.91%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.91%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001834	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM2, ROCA_DNA019_0.2um_2g	Environmental	Open in IMG/M
3300003580	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA	Environmental	Open in IMG/M
3300003617	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA	Environmental	Open in IMG/M
3300004277	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m	Environmental	Open in IMG/M
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007554	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709	Environmental	Open in IMG/M
3300007557	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715	Environmental	Open in IMG/M
3300007681	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ACM2_10720991	3300001834	Marine Plankton	VQTADALVQVFLTHNINVSTDTIMCSSSIDFAEEEGFATDACAHNIIDEAFETLA*
JGI26260J51721_10406281	3300003580	Marine	KVNNVTVATDVQTADALIEVFLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ*
JGI26082J51739_100695921	3300003617	Marine	QLAAVFKQHNINISTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALS*
Ga0066611_103197692	3300004277	Marine	IVVTVNNAVVANDVQTADALVQVFLTHNINVLQDTIMCSSSIDFAEEEGFASDASAHNIIDEAFDALS*
Ga0070743_101642532	3300005941	Estuarine	VNNTVVATDVQTADALVQVFLTHNVCVLTDTIMCSSSIDFAAEENFATDACAHNIIDAALDALS*
Ga0075476_101990821	3300006867	Aqueous	TADALVEVFLQHNVNVLTDTIMCSSSIDFAEEEGFATDNCAHNIIEAALEALV*
Ga0102880_10717743	3300007550	Estuarine	VTVNNVQVAAVNTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA*
Ga0102820_10235341	3300007554	Estuarine	AAVNTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA*
Ga0102821_10284376	3300007557	Estuarine	VIVVTVNNVQVAAVDTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA*
Ga0102821_10481584	3300007557	Estuarine	VIVVTVNNVQVAAVDTAAQLAAVFKQHNINWQTDVIMCSSSIDFAAEEGFATDSCAHNIIEAAYDVLA*
Ga0102821_11359101	3300007557	Estuarine	TAAQLVAVFKQHNINVLTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALS*
Ga0102824_10555813	3300007681	Estuarine	FLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ*
Ga0102823_11616622	3300007692	Estuarine	VNNAVVANDVQTADALVQVFLTHNINVLQDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALS*
Ga0099850_13527833	3300007960	Aqueous	VEVFLQHNVNVLVDTIMCSSSIDFASEEGFATDSCAHNIIEAALDML*
Ga0102963_10396346	3300009001	Pond Water	LQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDAVKNILVPLN*
Ga0115550_12797941	3300009076	Pelagic Marine	HVNNVCVAADVQTPDALVEVFLQHNIDVLADTIMCSSSIDFAQEEGFATDDCAHALIDTALEQL*
Ga0102814_101107051	3300009079	Estuarine	DALVQVFLTHNICVLTDTIMCSSSIDFAEEEGFASDASAHNIIDAALEALS*
Ga0102812_100931211	3300009086	Estuarine	NVQVAAVDTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA*
Ga0115570_103695141	3300009496	Pelagic Marine	KIVATDVQTSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFANDASAHNIIDDAFEALA*
Ga0115570_104917642	3300009496	Pelagic Marine	KIVATDVQTSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFASDASAHNIIDDAFEALA*
Ga0117790_10693661	3300014042	Epidermal Mucus	KVNNVQVAAVYTAAQLAAVFKQHNINVLTDTIMCSSSIDFAEEEGFATDSCAHNIIEEALAQLA*
Ga0181391_10572163	3300017713	Seawater	LQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181390_10560281	3300017719	Seawater	NINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ
Ga0181431_11151321	3300017735	Seawater	TADALIEVFMQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181431_11333851	3300017735	Seawater	MRQFCTAYTAAQLAAVFKQHNINWQTDVIMCSSSIDFAAEEGFATDSCAHNIIEAAYDVL
Ga0181433_10539141	3300017739	Seawater	TADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ
Ga0181433_11489852	3300017739	Seawater	VQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIEEAFDALA
Ga0181399_10358504	3300017742	Seawater	ADVQTADALVQVFLTHNINVLTDTIMCSSSIDFAAEEDFATDDCAHNIIENAIEALS
Ga0181389_10782694	3300017746	Seawater	VVKVNNVTVATDVQTADALIEVFMQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ
Ga0181392_11079111	3300017749	Seawater	VIVVTVNNVQVAAVDTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0187219_11572123	3300017751	Seawater	VATDVQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181400_10930241	3300017752	Seawater	VTVATDVQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181411_10335831	3300017755	Seawater	IVVKVNNVTVATDVQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181422_11115243	3300017762	Seawater	VQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181422_12071722	3300017762	Seawater	VVTVNDTVVATDVDTADALVQVFLTHNIDVLQDTIMCSSSIDFAAEEGFATDSCAFNIIEAALAQL
Ga0181410_12099721	3300017763	Seawater	DALVQVFLTHNINVLTDVIMCSSSIDFAEEEGFATDACAHNIIEEAFDALA
Ga0181423_12311543	3300017781	Seawater	ALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0181379_10964041	3300017783	Seawater	NNVQVAAVDTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0181565_101892801	3300017818	Salt Marsh	TSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFESDASAHNIIDEAFELLA
Ga0181577_105818283	3300017951	Salt Marsh	DVQTSDALVQVFLTHNIDVLNDVIMCSSSIDFAEEEGFASDASAHNIIDEAFEQLC
Ga0181580_104267751	3300017956	Salt Marsh	NNKIVAADVQTADALVEVFLQNNVNVLTDTIMCSSSIDFAEEEGFATDSCAHNIIEEALEALA
Ga0181589_105783921	3300017964	Salt Marsh	TVVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFASEEGFATDSCAHNIIDEAFEAL
Ga0181579_101342401	3300018039	Salt Marsh	DALVQVFLTHNINVLTDTIMCSSSIDFASEEGFATDSCAHNIIDEAFEALA
Ga0181579_102560581	3300018039	Salt Marsh	NNKIVATDVQTADALVEVFLQHNVNVNTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEVLA
Ga0181601_103624073	3300018041	Salt Marsh	DVQTADALVEVFLQNNVNVSTDTIMCSSSIDFAEEEGFATDSCAHNIIEEALDML
Ga0181572_103000941	3300018049	Salt Marsh	DVQSSDALVQVFLTHNIDVLNDVIMCSSSIDFASEEGFASDASAHNIIDDAFELLA
Ga0181560_101883042	3300018413	Salt Marsh	DALVQVFLTHNINVLTDVIMCSSSIDFAEEEGFATDACAYNIIEEAFEALA
Ga0181592_107285741	3300018421	Salt Marsh	DALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFATDSCAHNIIEEALEALA
Ga0181593_100695961	3300018423	Salt Marsh	QTADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALA
Ga0181591_103325101	3300018424	Salt Marsh	NNTVVATDVQSADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDACAHNIIDEAFEALS
Ga0181591_107649261	3300018424	Salt Marsh	DVQTADALVEVFLQNNVNVLTDVIMCSSSIDFAEEEGFATDSCAHNIIEEALEALA
Ga0181554_13120172	3300020052	Salt Marsh	VATDVQTSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFENDSAAHNIIDEAFELLA
Ga0181575_101889064	3300020055	Salt Marsh	IVVTVNNKIVATDVQTSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFENDSAAHNIIDEAFELLA
Ga0181573_104974732	3300020184	Salt Marsh	TVNNKIVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALA
Ga0206131_102371623	3300020185	Seawater	VNNTVVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFATDSCAHNIIDAALEQL
Ga0213865_102885421	3300021373	Seawater	VVAIDVQTADALVEVFLQHNVNVLTDVIMCSSSIDFAEEEGFATDSCAHNIIDAALEQL
Ga0213866_103221213	3300021425	Seawater	NNTVVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFASEEDFATDACAHNIIDAAFAQLA
Ga0213866_103530761	3300021425	Seawater	DVQTADALVEVFLQHNVNVLTDTIMCSSSIDFAEEEGFASDASVHNIIDEAFEALA
Ga0222717_100918106	3300021957	Estuarine Water	ATDVQTADALVQVFLTHNINVSTDTIMCSSSIDFAEEEGFDNDSAAHNIIDEAFDALA
Ga0222718_100195491	3300021958	Estuarine Water	ATTVQTAQQLLQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDAVKNILVPL
Ga0222718_103634722	3300021958	Estuarine Water	VVATDVQTADALVEVFLQHNVNVLTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEQLA
Ga0222718_106188182	3300021958	Estuarine Water	KQYNINMLTDTIMCSSSIDFAEEEGFATDNCAHNIIDAVKDILVPLA
Ga0222715_102329624	3300021960	Estuarine Water	TDVQTADALVQVFLTHNINVSTDTIMCSSSIDFAEEEGFDNDSAAHNIIDEAFDALA
Ga0222719_1000114061	3300021964	Estuarine Water	HVNNVVVATTVQTAQQLLQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDSVKDILVPLV
Ga0222719_100249981	3300021964	Estuarine Water	ATTVQTAKQLLQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDAVKNILVPL
Ga0255781_103992402	3300022934	Salt Marsh	ATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDACAHNIIDEAFEALS
Ga0255780_101728521	3300022935	Salt Marsh	DALVEVFLQHNINVLTDTIMCSSSIDFATEADFATDSCAHNIIDEALEALV
Ga0255770_104971671	3300022937	Salt Marsh	DALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFASDASAHNIIDEAFELLA
Ga0255782_102452481	3300023105	Salt Marsh	VNNTVVATDVQSADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDACAHNIIDEAFEALS
Ga0255784_1002276010	3300023108	Salt Marsh	TVNNKVVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALA
(restricted) Ga0233432_102616151	3300023109	Seawater	VAYDVQTADALVEVFLQHNIDVLTDTIMCSSSIDFAQEEGFDTDDCAHNIIEAALEQL
Ga0255760_100669776	3300023115	Salt Marsh	VEVFLQHNVNVLTDTIMHSSSIDFAEEEGFASDASAHNIIEEALEQLA
Ga0255760_102746073	3300023115	Salt Marsh	VTVNNKIVATDVQTSDALVQVFLTHNIDVLNDVIMCSSSIDFAEEEGFASDASAHNIIDEAFEQLC
Ga0255766_103223353	3300023172	Salt Marsh	QTADALVQVFLTHNINVLKDTIMCSSSIDFAEEEGFASDASAHNIIDEALEALA
Ga0255776_104540213	3300023173	Salt Marsh	VFLTHNIDVLNDVIMCSSSIDFAEEEGFASDASAHNIIDEAFEQLC
Ga0255772_102718673	3300023176	Salt Marsh	ATDVQTSDALVQVFLTHKIDVLNDVIMCSSSIDFAEEEGFDSDSAAHNIIDEAFELLA
Ga0255772_105591732	3300023176	Salt Marsh	TVNNTVVATDVQSADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEALS
Ga0228636_10522421	3300024191	Seawater	DVQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228636_10953171	3300024191	Seawater	ANDVQTADALVQVFLQHNICVLTDTIMHSSSIDFAEEEGFASDASAHNIIDEAFEALS
Ga0233402_11002191	3300024229	Seawater	QHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228678_10702252	3300024244	Seawater	NDVQTADALVQVFLQHNICVLTDTIMHSSSIDFAEEEGFASDASAHNIIDEAFEALS
Ga0228675_10441804	3300024247	Seawater	LIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228676_10598631	3300024248	Seawater	DALIEVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
(restricted) Ga0233438_102999671	3300024255	Seawater	DALIEVFLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPIQ
(restricted) Ga0233444_1002558214	3300024264	Seawater	VVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFAEEEGFASDASAHNIIDAALEALA
(restricted) Ga0233444_101318411	3300024264	Seawater	VVATDVQTADALVQVFLTHNVNVNTDVIMCSSSIDFAEEEGFASDASAHNIIDEAFDVLA
Ga0228631_11287972	3300024329	Seawater	TADALVQVFLTHNINVLTDTIMCSSSIDFAAEEDFATDDCAHNIIDAAFELLA
Ga0244777_105748593	3300024343	Estuarine	TADALVKVFLQHNINVNTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEVLS
Ga0244775_102219981	3300024346	Estuarine	TAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0244775_104930191	3300024346	Estuarine	VNNTVVATDVQTADALVQVFLTHNVCVLTDTIMCSSSIDFAAEENFATDACAHNIIDAALDALS
Ga0228662_10554391	3300024415	Seawater	LQVYVNNVCVANDVQTADALVQVFLQHNICVLTDTIMHSSSIDFAEEEGFASDASAHNIIDEAFEALS
Ga0233396_10834993	3300024428	Seawater	QTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0209136_11152012	3300025636	Marine	TNVQTAQQLLQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDAVKDILVPLN
Ga0209532_11634512	3300025696	Pelagic Marine	VQVFLTHKIDVLNDVIMCSSSIDFAEEEGFANDASAHNIIDEAFEALA
Ga0209771_10333215	3300025701	Marine	VVTVNNTVVATDVQTADALVQVFLTHNINVLTDTIMCSSSIDFAAEEGFATDNCAHNIIDAVKDILVPLN
Ga0209534_102698063	3300025880	Pelagic Marine	DVQTADALVEVFLQNNINVLTDTIMCSSSIDFAEEEGFATDACAHNIIDAALEQL
Ga0209961_10304621	3300026130	Water	VNNVVVATTVQTAQQLLQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDSVKDILVPLV
Ga0209929_11546322	3300026187	Pond Water	LQVFTQYNINMLTDTIMCSSSIDFAAEEGFATDNCAHNIIDAVKNILVPLN
Ga0208673_10145176	3300027192	Estuarine	VFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0208804_10248412	3300027235	Estuarine	TAAQLAAVFKQHNINWQTDVIMCSSSIDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0208897_10844161	3300027571	Estuarine	VQTADALIEVFLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ
Ga0209037_10894493	3300027612	Marine	VVTVNNVQVAAVYTADALVKVFLQHNINVNTDTIMCSSSIDFAEEEGFASDASAHNIIDEAFEVLS
Ga0208304_103004791	3300027751	Estuarine	VFLQHNINCVTDTIMCSSSIDFAAEENFATDACAHNIIDAALDVLAPVQ
Ga0208305_100377391	3300027753	Estuarine	VVTVNNVQVAAVDTAAQLAAVFKQHNINWQTDVIMCSSSVDFAAEEGFATDSCAHNIIEAAYDVLA
Ga0228674_10831411	3300028008	Seawater	VFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228608_10993421	3300028136	Seawater	VFLQNNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228640_10167071	3300028273	Seawater	TDVQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228646_10334836	3300028280	Seawater	NTCISASDVQTADALIQVFLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0228615_10634071	3300028418	Seawater	FLQHNINCVTDTIMCSSSIDFAAEENFATDVCAHNIIDAALDVLAPVQ
Ga0315320_101255148	3300031851	Seawater	NTVVATDVQTADALVQVFLTHNINVLTDVIMCSSSIDFAEEEGFATDACAHNIIEEAFDALA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters