Basic Information | |
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Family ID | F086710 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 110 |
Average Sequence Length | 44 residues |
Representative Sequence | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSI |
Number of Associated Samples | 60 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 30.00 % |
% of genes from short scaffolds (< 2000 bps) | 22.73 % |
Associated GOLD sequencing projects | 56 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.29 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (72.727 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater (23.636 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.545 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (52.727 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 23.61% β-sheet: 0.00% Coil/Unstructured: 76.39% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.29 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Lake Freshwater Lake Freshwater Lentic Freshwater Freshwater, Plankton Freshwater Lake Freshwater Freshwater Water Bodies Freshwater Aqueous Freshwater To Marine Saline Gradient Estuarine Water Fracking Water |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
metazooDRAFT_12704841 | 3300002200 | Lake | MIGPKETVALAWCDNGSVDGKFAEGLMNATITGAANGMPIHTSI |
metazooDRAFT_108410342 | 3300002476 | Lake | MIGKNDTVAIGWCDNGTTDGKFVEGLTTALVAGPTNDMIINTSIRVQGNQIGR |
Ga0068872_101237344 | 3300005528 | Freshwater Lake | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQIGR |
Ga0049080_101257104 | 3300005582 | Freshwater Lentic | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPN |
Ga0049080_101454451 | 3300005582 | Freshwater Lentic | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQI |
Ga0075470_1000151612 | 3300006030 | Aqueous | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIR |
Ga0075473_100690573 | 3300006875 | Aqueous | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSI |
Ga0075472_100114058 | 3300006917 | Aqueous | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIGRQR |
Ga0075472_101656884 | 3300006917 | Aqueous | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIGRQR |
Ga0075458_102827951 | 3300007363 | Aqueous | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPA |
Ga0114340_10317658 | 3300008107 | Freshwater, Plankton | MIGTKDTVSLGWCDNGTTDGKFTEGLMTAALAGPANGV |
Ga0114340_11765252 | 3300008107 | Freshwater, Plankton | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGNQIGR |
Ga0114346_10691575 | 3300008113 | Freshwater, Plankton | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPI |
Ga0114350_11631081 | 3300008116 | Freshwater, Plankton | MIQKQETVAIGWCDNGTTDGKFTKGLMTAVIAGPNNGMRF |
Ga0114351_10823581 | 3300008117 | Freshwater, Plankton | MIGKTDTVAIGWCDNGTTDGKFTEGLLAVTLAAPANGMKIDK |
Ga0114351_13051181 | 3300008117 | Freshwater, Plankton | MIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIR |
Ga0114351_14005743 | 3300008117 | Freshwater, Plankton | MIGKTDTVAIGWCDNGNTDGKFTEGLLAVTLAAPANGMKID |
Ga0114355_10595461 | 3300008120 | Freshwater, Plankton | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQR |
Ga0114363_10175615 | 3300008266 | Freshwater, Plankton | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNG |
Ga0114363_10403991 | 3300008266 | Freshwater, Plankton | MIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQR |
Ga0114363_10666521 | 3300008266 | Freshwater, Plankton | MIQKQETVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQI |
Ga0114363_10964611 | 3300008266 | Freshwater, Plankton | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGN |
Ga0114363_11845261 | 3300008266 | Freshwater, Plankton | MIGKTDTVAIGWCDNGTTDGKFTEGLLAVTLAAPANGMKIDKTVR |
Ga0114878_12332061 | 3300008339 | Freshwater Lake | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQI |
Ga0114880_10687161 | 3300008450 | Freshwater Lake | MIQKQETVAIGWCDNGLTDGKFTEGLMTAVIAGPGNGMPIHTS |
Ga0110928_11815223 | 3300008510 | Water Bodies | MIGKNDTVALGWCDNGTTDGKFTEGLTTAIIAGPSN |
Ga0104242_10696403 | 3300008962 | Freshwater | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHT |
Ga0129333_100544087 | 3300010354 | Freshwater To Marine Saline Gradient | MIQKQETVAVGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHT |
Ga0129333_102771864 | 3300010354 | Freshwater To Marine Saline Gradient | MIGKTDTVAIGWCDNGTTDGKFTEGLMTAVLAGPA |
Ga0129333_103246544 | 3300010354 | Freshwater To Marine Saline Gradient | MIQKNETVAIGWCDNGTTDGKFTEGLLAVTLAAPA |
Ga0129333_104198773 | 3300010354 | Freshwater To Marine Saline Gradient | MIGKNDTVALGWCDNGTTDGKFTEGLMTAFIAGANNDMFINTSIRVQGNQIGRQRQ |
Ga0129333_105166493 | 3300010354 | Freshwater To Marine Saline Gradient | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAFIAGANNDMFIN |
Ga0129333_107675261 | 3300010354 | Freshwater To Marine Saline Gradient | MIRPNETVAIGWCDNGTTDGKFTEGLMTAALAGPANGVGLSS |
Ga0129333_110955853 | 3300010354 | Freshwater To Marine Saline Gradient | MIGKNDTVALGWCDNGTTDGKFTEGLMTAFIAGANNDMFINTSIRVQGNQIG |
Ga0129333_116755641 | 3300010354 | Freshwater To Marine Saline Gradient | MIGKNDTVALGWCDNGLTDGKFTEGLMTAFIAGANNGMFINTSIR |
Ga0129336_100612685 | 3300010370 | Freshwater To Marine Saline Gradient | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIG |
Ga0129336_103999053 | 3300010370 | Freshwater To Marine Saline Gradient | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPI |
Ga0129336_105682522 | 3300010370 | Freshwater To Marine Saline Gradient | MISKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPA |
Ga0129336_105882211 | 3300010370 | Freshwater To Marine Saline Gradient | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQG |
Ga0129336_105890933 | 3300010370 | Freshwater To Marine Saline Gradient | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQG |
(restricted) Ga0172367_106112162 | 3300013126 | Freshwater | MIGKNDTVAIGWCDNGLVDGKFTEGLLGAVLSASPAVKITSSIRVS |
(restricted) Ga0172373_108593151 | 3300013131 | Freshwater | MIGKNDTVALGWCDNGTTDGKFTEGLTTALVAGPGN |
(restricted) Ga0172373_108624911 | 3300013131 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQ |
(restricted) Ga0172372_104765603 | 3300013132 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPN |
(restricted) Ga0172372_106101091 | 3300013132 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQI |
(restricted) Ga0172372_108045743 | 3300013132 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLTTAILTGPVN |
(restricted) Ga0172376_100752445 | 3300014720 | Freshwater | MINKNDTVAIGWCDNGLVDGKFTEGLLGAVLSASPAVKITSSI |
(restricted) Ga0172376_102010641 | 3300014720 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGN |
Ga0181365_10074345 | 3300017736 | Freshwater Lake | MIQKQETVAIGWCDNGTTDGKFTEGLMTSVIAGPNNCMRFTTS |
Ga0181357_10474834 | 3300017777 | Freshwater Lake | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMTFSTSIRVQG |
Ga0181349_13112391 | 3300017778 | Freshwater Lake | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMT |
Ga0181355_13107781 | 3300017785 | Freshwater Lake | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMTFSTSIRVQGNQ |
Ga0211729_113049703 | 3300020172 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTT |
Ga0208465_100005462 | 3300020570 | Freshwater | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAAIAGPGNGTPIASS |
Ga0208465_10283841 | 3300020570 | Freshwater | MIGKTDTVALGWCDNGTTDGKFTEGLATALVAGGANGMPIH |
Ga0194133_101885331 | 3300021091 | Freshwater Lake | MIKKNETVSVGWCDNGTTDGKFTEGLTSILLAGPNNG |
Ga0222714_103651091 | 3300021961 | Estuarine Water | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFSTSIRVQ |
Ga0222713_107220681 | 3300021962 | Estuarine Water | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSI |
Ga0222712_102472811 | 3300021963 | Estuarine Water | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNN |
Ga0181354_12205663 | 3300022190 | Freshwater Lake | MVGPKETVAIGWCDNGLVDGKFTEGLMTAVIAGGANKMPISTSIRVQ |
Ga0214917_102965733 | 3300022752 | Freshwater | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIGRQ |
Ga0255237_10725181 | 3300024564 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSI |
Ga0255237_11259691 | 3300024564 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRV |
Ga0208546_10027659 | 3300025585 | Aqueous | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQ |
Ga0208784_12551441 | 3300025732 | Aqueous | MIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMP |
Ga0209975_10064001 | 3300026993 | Freshwater Lake | MIQKNETVAIGWCDNGLTDGKFTEGLMAAVIAGPGN |
Ga0255087_10389091 | 3300027337 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMR |
Ga0255094_10673631 | 3300027494 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQ |
Ga0255075_10611811 | 3300027578 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGR |
Ga0208974_10683503 | 3300027608 | Freshwater Lentic | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRV |
Ga0208974_11708882 | 3300027608 | Freshwater Lentic | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTSS |
Ga0208975_10121835 | 3300027659 | Freshwater Lentic | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFT |
Ga0208975_11420153 | 3300027659 | Freshwater Lentic | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQ |
Ga0209355_12461013 | 3300027744 | Freshwater Lake | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNN |
Ga0209246_100147786 | 3300027785 | Freshwater Lake | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQG |
Ga0209972_104453612 | 3300027793 | Freshwater Lake | MIGKTDTVALGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQG |
Ga0209990_100141931 | 3300027816 | Freshwater Lake | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQG |
Ga0209990_100182671 | 3300027816 | Freshwater Lake | MIGKTDTVAIGWCDNGNTDGKFTEGLLAVTLAAPANGMKIDKTVRVS |
Ga0209990_101756944 | 3300027816 | Freshwater Lake | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGM |
Ga0209990_103121611 | 3300027816 | Freshwater Lake | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGNQIG |
(restricted) Ga0247834_10641214 | 3300027977 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTS |
Ga0315907_1002101212 | 3300031758 | Freshwater | MIQKNETVAIGWCDNGLTDGKFTEGLMTAIVAGPGNGINIHTSIRVQGNQ |
Ga0315907_100289511 | 3300031758 | Freshwater | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGN |
Ga0315907_100636821 | 3300031758 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGM |
Ga0315907_104706213 | 3300031758 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQIGRQR |
Ga0315907_106835241 | 3300031758 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGM |
Ga0315907_109796493 | 3300031758 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRV |
Ga0315907_112267691 | 3300031758 | Freshwater | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMP |
Ga0315900_100976271 | 3300031787 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQG |
Ga0315900_101471736 | 3300031787 | Freshwater | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGA |
Ga0315900_102853914 | 3300031787 | Freshwater | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGNQI |
Ga0315909_100553946 | 3300031857 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFT |
Ga0315909_101012871 | 3300031857 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMSFTTSIR |
Ga0315909_101748991 | 3300031857 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGN |
Ga0315909_102627014 | 3300031857 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIR |
Ga0315904_101435851 | 3300031951 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQR |
Ga0315904_104357984 | 3300031951 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNG |
Ga0315904_112213843 | 3300031951 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGVPIHTTI |
Ga0315901_108120541 | 3300031963 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGGA |
Ga0315901_108842291 | 3300031963 | Freshwater | MIQKNETVAIGWCDGGLTDGKFTEGLMTAVIAGPGNGMP |
Ga0315906_103379721 | 3300032050 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMR |
Ga0315902_105696581 | 3300032093 | Freshwater | MIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIR |
Ga0315902_105796861 | 3300032093 | Freshwater | MIQKNETVAIGWCDGGLTDGKFTEGLMTAVIAGPGNG |
Ga0315903_101112486 | 3300032116 | Freshwater | MIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANG |
Ga0315903_101146274 | 3300032116 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIG |
Ga0315903_101211161 | 3300032116 | Freshwater | MIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTT |
Ga0315903_107163361 | 3300032116 | Freshwater | MIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMP |
Ga0310130_0028637_3_140 | 3300034073 | Fracking Water | MIGKNDTVALGWCDNGTTDGKFTEGLTTALVAGPGNGMPIHTTIRV |
Ga0335068_0035419_2845_2988 | 3300034116 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMKISTNDTATT |
Ga0335068_0235033_788_943 | 3300034116 | Freshwater | MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIG |
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