NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F086710

Metagenome / Metatranscriptome Family F086710

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086710
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 44 residues
Representative Sequence MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSI
Number of Associated Samples 60
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 30.00 %
% of genes from short scaffolds (< 2000 bps) 22.73 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.727 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater
(23.636 % of family members)
Environment Ontology (ENVO) Unclassified
(44.545 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(52.727 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.
1metazooDRAFT_12704841
2metazooDRAFT_108410342
3Ga0068872_101237344
4Ga0049080_101257104
5Ga0049080_101454451
6Ga0075470_1000151612
7Ga0075473_100690573
8Ga0075472_100114058
9Ga0075472_101656884
10Ga0075458_102827951
11Ga0114340_10317658
12Ga0114340_11765252
13Ga0114346_10691575
14Ga0114350_11631081
15Ga0114351_10823581
16Ga0114351_13051181
17Ga0114351_14005743
18Ga0114355_10595461
19Ga0114363_10175615
20Ga0114363_10403991
21Ga0114363_10666521
22Ga0114363_10964611
23Ga0114363_11845261
24Ga0114878_12332061
25Ga0114880_10687161
26Ga0110928_11815223
27Ga0104242_10696403
28Ga0129333_100544087
29Ga0129333_102771864
30Ga0129333_103246544
31Ga0129333_104198773
32Ga0129333_105166493
33Ga0129333_107675261
34Ga0129333_110955853
35Ga0129333_116755641
36Ga0129336_100612685
37Ga0129336_103999053
38Ga0129336_105682522
39Ga0129336_105882211
40Ga0129336_105890933
41Ga0172367_106112162
42Ga0172373_108593151
43Ga0172373_108624911
44Ga0172372_104765603
45Ga0172372_106101091
46Ga0172372_108045743
47Ga0172376_100752445
48Ga0172376_102010641
49Ga0181365_10074345
50Ga0181357_10474834
51Ga0181349_13112391
52Ga0181355_13107781
53Ga0211729_113049703
54Ga0208465_100005462
55Ga0208465_10283841
56Ga0194133_101885331
57Ga0222714_103651091
58Ga0222713_107220681
59Ga0222712_102472811
60Ga0181354_12205663
61Ga0214917_102965733
62Ga0255237_10725181
63Ga0255237_11259691
64Ga0208546_10027659
65Ga0208784_12551441
66Ga0209975_10064001
67Ga0255087_10389091
68Ga0255094_10673631
69Ga0255075_10611811
70Ga0208974_10683503
71Ga0208974_11708882
72Ga0208975_10121835
73Ga0208975_11420153
74Ga0209355_12461013
75Ga0209246_100147786
76Ga0209972_104453612
77Ga0209990_100141931
78Ga0209990_100182671
79Ga0209990_101756944
80Ga0209990_103121611
81Ga0247834_10641214
82Ga0315907_1002101212
83Ga0315907_100289511
84Ga0315907_100636821
85Ga0315907_104706213
86Ga0315907_106835241
87Ga0315907_109796493
88Ga0315907_112267691
89Ga0315900_100976271
90Ga0315900_101471736
91Ga0315900_102853914
92Ga0315909_100553946
93Ga0315909_101012871
94Ga0315909_101748991
95Ga0315909_102627014
96Ga0315904_101435851
97Ga0315904_104357984
98Ga0315904_112213843
99Ga0315901_108120541
100Ga0315901_108842291
101Ga0315906_103379721
102Ga0315902_105696581
103Ga0315902_105796861
104Ga0315903_101112486
105Ga0315903_101146274
106Ga0315903_101211161
107Ga0315903_107163361
108Ga0310130_0028637_3_140
109Ga0335068_0035419_2845_2988
110Ga0335068_0235033_788_943
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.61%    β-sheet: 0.00%    Coil/Unstructured: 76.39%
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510152025303540MIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
27.3%72.7%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater
Lake
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Freshwater
Water Bodies
Freshwater
Aqueous
Freshwater To Marine Saline Gradient
Estuarine Water
Fracking Water
12.7%5.5%10.9%11.8%23.6%4.5%6.4%11.8%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
metazooDRAFT_127048413300002200LakeMIGPKETVALAWCDNGSVDGKFAEGLMNATITGAANGMPIHTSI
metazooDRAFT_1084103423300002476LakeMIGKNDTVAIGWCDNGTTDGKFVEGLTTALVAGPTNDMIINTSIRVQGNQIGR
Ga0068872_1012373443300005528Freshwater LakeMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQIGR
Ga0049080_1012571043300005582Freshwater LenticMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPN
Ga0049080_1014544513300005582Freshwater LenticMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQI
Ga0075470_10001516123300006030AqueousMIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIR
Ga0075473_1006905733300006875AqueousMIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSI
Ga0075472_1001140583300006917AqueousMIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIGRQR
Ga0075472_1016568843300006917AqueousMIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIGRQR
Ga0075458_1028279513300007363AqueousMIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPA
Ga0114340_103176583300008107Freshwater, PlanktonMIGTKDTVSLGWCDNGTTDGKFTEGLMTAALAGPANGV
Ga0114340_117652523300008107Freshwater, PlanktonMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGNQIGR
Ga0114346_106915753300008113Freshwater, PlanktonMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPI
Ga0114350_116310813300008116Freshwater, PlanktonMIQKQETVAIGWCDNGTTDGKFTKGLMTAVIAGPNNGMRF
Ga0114351_108235813300008117Freshwater, PlanktonMIGKTDTVAIGWCDNGTTDGKFTEGLLAVTLAAPANGMKIDK
Ga0114351_130511813300008117Freshwater, PlanktonMIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIR
Ga0114351_140057433300008117Freshwater, PlanktonMIGKTDTVAIGWCDNGNTDGKFTEGLLAVTLAAPANGMKID
Ga0114355_105954613300008120Freshwater, PlanktonMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQR
Ga0114363_101756153300008266Freshwater, PlanktonMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNG
Ga0114363_104039913300008266Freshwater, PlanktonMIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQR
Ga0114363_106665213300008266Freshwater, PlanktonMIQKQETVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQI
Ga0114363_109646113300008266Freshwater, PlanktonMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGN
Ga0114363_118452613300008266Freshwater, PlanktonMIGKTDTVAIGWCDNGTTDGKFTEGLLAVTLAAPANGMKIDKTVR
Ga0114878_123320613300008339Freshwater LakeMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQI
Ga0114880_106871613300008450Freshwater LakeMIQKQETVAIGWCDNGLTDGKFTEGLMTAVIAGPGNGMPIHTS
Ga0110928_118152233300008510Water BodiesMIGKNDTVALGWCDNGTTDGKFTEGLTTAIIAGPSN
Ga0104242_106964033300008962FreshwaterMIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHT
Ga0129333_1005440873300010354Freshwater To Marine Saline GradientMIQKQETVAVGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHT
Ga0129333_1027718643300010354Freshwater To Marine Saline GradientMIGKTDTVAIGWCDNGTTDGKFTEGLMTAVLAGPA
Ga0129333_1032465443300010354Freshwater To Marine Saline GradientMIQKNETVAIGWCDNGTTDGKFTEGLLAVTLAAPA
Ga0129333_1041987733300010354Freshwater To Marine Saline GradientMIGKNDTVALGWCDNGTTDGKFTEGLMTAFIAGANNDMFINTSIRVQGNQIGRQRQ
Ga0129333_1051664933300010354Freshwater To Marine Saline GradientMIGKNDTVAIGWCDNGTTDGKFTEGLMTAFIAGANNDMFIN
Ga0129333_1076752613300010354Freshwater To Marine Saline GradientMIRPNETVAIGWCDNGTTDGKFTEGLMTAALAGPANGVGLSS
Ga0129333_1109558533300010354Freshwater To Marine Saline GradientMIGKNDTVALGWCDNGTTDGKFTEGLMTAFIAGANNDMFINTSIRVQGNQIG
Ga0129333_1167556413300010354Freshwater To Marine Saline GradientMIGKNDTVALGWCDNGLTDGKFTEGLMTAFIAGANNGMFINTSIR
Ga0129336_1006126853300010370Freshwater To Marine Saline GradientMIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIG
Ga0129336_1039990533300010370Freshwater To Marine Saline GradientMIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPI
Ga0129336_1056825223300010370Freshwater To Marine Saline GradientMISKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPA
Ga0129336_1058822113300010370Freshwater To Marine Saline GradientMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQG
Ga0129336_1058909333300010370Freshwater To Marine Saline GradientMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQG
(restricted) Ga0172367_1061121623300013126FreshwaterMIGKNDTVAIGWCDNGLVDGKFTEGLLGAVLSASPAVKITSSIRVS
(restricted) Ga0172373_1085931513300013131FreshwaterMIGKNDTVALGWCDNGTTDGKFTEGLTTALVAGPGN
(restricted) Ga0172373_1086249113300013131FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQ
(restricted) Ga0172372_1047656033300013132FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPN
(restricted) Ga0172372_1061010913300013132FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQI
(restricted) Ga0172372_1080457433300013132FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLTTAILTGPVN
(restricted) Ga0172376_1007524453300014720FreshwaterMINKNDTVAIGWCDNGLVDGKFTEGLLGAVLSASPAVKITSSI
(restricted) Ga0172376_1020106413300014720FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGN
Ga0181365_100743453300017736Freshwater LakeMIQKQETVAIGWCDNGTTDGKFTEGLMTSVIAGPNNCMRFTTS
Ga0181357_104748343300017777Freshwater LakeMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMTFSTSIRVQG
Ga0181349_131123913300017778Freshwater LakeMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMT
Ga0181355_131077813300017785Freshwater LakeMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMTFSTSIRVQGNQ
Ga0211729_1130497033300020172FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTT
Ga0208465_1000054623300020570FreshwaterMIGKSDTVAIGWCDNGTTDGKFTEGLMTAAIAGPGNGTPIASS
Ga0208465_102838413300020570FreshwaterMIGKTDTVALGWCDNGTTDGKFTEGLATALVAGGANGMPIH
Ga0194133_1018853313300021091Freshwater LakeMIKKNETVSVGWCDNGTTDGKFTEGLTSILLAGPNNG
Ga0222714_1036510913300021961Estuarine WaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFSTSIRVQ
Ga0222713_1072206813300021962Estuarine WaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSI
Ga0222712_1024728113300021963Estuarine WaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNN
Ga0181354_122056633300022190Freshwater LakeMVGPKETVAIGWCDNGLVDGKFTEGLMTAVIAGGANKMPISTSIRVQ
Ga0214917_1029657333300022752FreshwaterMIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQGNQIGRQ
Ga0255237_107251813300024564FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSI
Ga0255237_112596913300024564FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRV
Ga0208546_100276593300025585AqueousMIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIRVQ
Ga0208784_125514413300025732AqueousMIGKNDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMP
Ga0209975_100640013300026993Freshwater LakeMIQKNETVAIGWCDNGLTDGKFTEGLMAAVIAGPGN
Ga0255087_103890913300027337FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMR
Ga0255094_106736313300027494FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQ
Ga0255075_106118113300027578FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGR
Ga0208974_106835033300027608Freshwater LenticMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRV
Ga0208974_117088823300027608Freshwater LenticMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTSS
Ga0208975_101218353300027659Freshwater LenticMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFT
Ga0208975_114201533300027659Freshwater LenticMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQ
Ga0209355_124610133300027744Freshwater LakeMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNN
Ga0209246_1001477863300027785Freshwater LakeMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQG
Ga0209972_1044536123300027793Freshwater LakeMIGKTDTVALGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQG
Ga0209990_1001419313300027816Freshwater LakeMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQG
Ga0209990_1001826713300027816Freshwater LakeMIGKTDTVAIGWCDNGNTDGKFTEGLLAVTLAAPANGMKIDKTVRVS
Ga0209990_1017569443300027816Freshwater LakeMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGM
Ga0209990_1031216113300027816Freshwater LakeMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGNQIG
(restricted) Ga0247834_106412143300027977FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTS
Ga0315907_10021012123300031758FreshwaterMIQKNETVAIGWCDNGLTDGKFTEGLMTAIVAGPGNGINIHTSIRVQGNQ
Ga0315907_1002895113300031758FreshwaterMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGN
Ga0315907_1006368213300031758FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGM
Ga0315907_1047062133300031758FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQGNQIGRQR
Ga0315907_1068352413300031758FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGM
Ga0315907_1097964933300031758FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRV
Ga0315907_1122676913300031758FreshwaterMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMP
Ga0315900_1009762713300031787FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMPIHTTIRVQG
Ga0315900_1014717363300031787FreshwaterMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGA
Ga0315900_1028539143300031787FreshwaterMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANGMPIHTSIRVQGNQI
Ga0315909_1005539463300031857FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFT
Ga0315909_1010128713300031857FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMSFTTSIR
Ga0315909_1017489913300031857FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGN
Ga0315909_1026270143300031857FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIR
Ga0315904_1014358513300031951FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIGRQR
Ga0315904_1043579843300031951FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNG
Ga0315904_1122138433300031951FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGVPIHTTI
Ga0315901_1081205413300031963FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLMTAVIAGGA
Ga0315901_1088422913300031963FreshwaterMIQKNETVAIGWCDGGLTDGKFTEGLMTAVIAGPGNGMP
Ga0315906_1033797213300032050FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMR
Ga0315902_1056965813300032093FreshwaterMIGKSDTVAIGWCDNGTTDGKFTEGLMTAVLAGPANGMPIHTSIR
Ga0315902_1057968613300032093FreshwaterMIQKNETVAIGWCDGGLTDGKFTEGLMTAVIAGPGNG
Ga0315903_1011124863300032116FreshwaterMIQKNETVAIGWCDNGTTDGKFTEGLMTAVIAGGANG
Ga0315903_1011462743300032116FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIG
Ga0315903_1012111613300032116FreshwaterMIQKQETVAIGWCDNGNTDGKFTEGLMTAVIAGPNNGMRFTT
Ga0315903_1071633613300032116FreshwaterMIGKTDTVAIGWCDNGTTDGKFTEGLATALVAGGANGMP
Ga0310130_0028637_3_1403300034073Fracking WaterMIGKNDTVALGWCDNGTTDGKFTEGLTTALVAGPGNGMPIHTTIRV
Ga0335068_0035419_2845_29883300034116FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMKISTNDTATT
Ga0335068_0235033_788_9433300034116FreshwaterMIQKQETVAIGWCDNGTTDGKFTEGLMTAVIAGPNNGMRFTTSIRVQGNQIG


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