NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F086696

Metagenome Family F086696

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086696
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 44 residues
Representative Sequence VVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Number of Associated Samples 69
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.92 %
% of genes near scaffold ends (potentially truncated) 92.73 %
% of genes from short scaffolds (< 2000 bps) 80.91 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (64.545 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(32.727 % of family members)
Environment Ontology (ENVO) Unclassified
(63.636 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.455 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1KansclcFeb2_02554570
2AF_2010_repII_A001DRAFT_101232892
3Ga0066388_1024498522
4Ga0066388_1059850581
5Ga0066388_1064750342
6Ga0070699_1001366595
7Ga0070697_1002268843
8Ga0066905_1005258331
9Ga0066903_1041316593
10Ga0066903_1072517552
11Ga0066903_1074140841
12Ga0066903_1077987242
13Ga0066903_1086107031
14Ga0075424_1012829261
15Ga0075424_1028351111
16Ga0126374_112935931
17Ga0126380_120661572
18Ga0126384_104095951
19Ga0126384_105693543
20Ga0126384_125157262
21Ga0126372_130745791
22Ga0126379_103674911
23Ga0126379_122514401
24Ga0126381_1040443781
25Ga0126383_113547603
26Ga0137393_115735061
27Ga0137363_103707392
28Ga0137361_117913433
29Ga0137396_102582891
30Ga0137359_115836501
31Ga0126375_115450631
32Ga0126375_117110612
33Ga0182036_103025771
34Ga0182036_116047751
35Ga0182032_103887583
36Ga0182034_102319573
37Ga0182034_103388861
38Ga0182034_118547272
39Ga0182038_104971911
40Ga0182038_106957613
41Ga0213879_101959311
42Ga0126371_126686222
43Ga0126371_135282612
44Ga0207684_109687543
45Ga0207646_118274861
46Ga0307287_101204931
47Ga0307286_103966861
48Ga0170820_148198281
49Ga0318516_101606071
50Ga0318534_107949831
51Ga0318541_103288611
52Ga0318515_103402691
53Ga0318515_106258882
54Ga0318515_107230681
55Ga0310915_100592861
56Ga0310915_107475531
57Ga0318542_107772772
58Ga0318561_101561831
59Ga0318561_106398161
60Ga0318560_104084661
61Ga0306917_113830811
62Ga0318500_104552771
63Ga0318501_103958031
64Ga0306918_112130591
65Ga0318492_105189172
66Ga0318509_105510441
67Ga0318546_100617264
68Ga0318568_105680371
69Ga0318567_103503111
70Ga0306919_101001791
71Ga0306919_103434593
72Ga0306925_101502501
73Ga0306925_104521171
74Ga0306925_105661233
75Ga0306925_105742883
76Ga0306925_107416261
77Ga0306925_111643222
78Ga0318520_102756861
79Ga0306923_101711411
80Ga0306923_118189991
81Ga0306923_118876891
82Ga0306921_100868701
83Ga0306921_103693053
84Ga0306921_107991423
85Ga0310912_100975521
86Ga0310912_100981763
87Ga0310912_101370071
88Ga0310912_102271191
89Ga0310912_108586941
90Ga0310916_101757002
91Ga0310913_100696101
92Ga0310909_112186881
93Ga0306926_100242931
94Ga0306926_101972175
95Ga0306926_124955511
96Ga0318530_103835751
97Ga0306922_101499951
98Ga0306922_101680963
99Ga0306922_110470241
100Ga0318569_104911132
101Ga0318507_102837991
102Ga0318533_107179441
103Ga0318510_100975801
104Ga0318510_104065172
105Ga0306924_121939252
106Ga0318577_106094621
107Ga0306920_1002803351
108Ga0306920_1007341943
109Ga0306920_1008087882
110Ga0318519_101654372
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.50%    β-sheet: 0.00%    Coil/Unstructured: 72.50%
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Variant

510152025303540VVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIRSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
64.5%35.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Soil
Soil
Forest Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Rhizosphere
4.5%12.7%32.7%30.9%8.2%3.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_025545702124908045SoilYKGEYVVAQDELKLIDATARDKKCKTPENWGSSSAIR
AF_2010_repII_A001DRAFT_1012328923300000793Forest SoilMEKAEKGAGGALVNVIAYKGEYVGTQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0066388_10244985223300005332Tropical Forest SoilMDKAEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0066388_10598505813300005332Tropical Forest SoilTGGAAISLVAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR*
Ga0066388_10647503423300005332Tropical Forest SoilLVAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR*
Ga0070699_10013665953300005518Corn, Switchgrass And Miscanthus RhizosphereISLVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR*
Ga0070697_10022688433300005536Corn, Switchgrass And Miscanthus RhizosphereLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR*
Ga0066905_10052583313300005713Tropical Forest SoilQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR*
Ga0066903_10413165933300005764Tropical Forest SoilAEQGTGGGFVNVIAYKGDYVAAAEELKVIESTMRVKKCSTPDNWSSTSAIR*
Ga0066903_10725175523300005764Tropical Forest SoilEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0066903_10741408413300005764Tropical Forest SoilEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0066903_10779872423300005764Tropical Forest SoilAYKGEYAATQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0066903_10861070313300005764Tropical Forest SoilAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTPAIR*
Ga0075424_10128292613300006904Populus RhizosphereVIAYKGDYIAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0075424_10283511113300006904Populus RhizosphereSLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR*
Ga0126374_1129359313300009792Tropical Forest SoilREYAAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0126380_1206615723300010043Tropical Forest SoilAEKGAGGAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSSSAIR*
Ga0126384_1040959513300010046Tropical Forest SoilKARQATGGAVINVVAYQNEYTATQEELRVIDATARLKKCSTPANWASTSAIR*
Ga0126384_1056935433300010046Tropical Forest SoilAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWDSTSAIR*
Ga0126384_1251572623300010046Tropical Forest SoilVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0126372_1307457913300010360Tropical Forest SoilAVVNVIAYKAEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0126379_1036749113300010366Tropical Forest SoilDKAEKGTGGAVVSVIAYKSDYLAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0126379_1225144013300010366Tropical Forest SoilLMDKAEKGTGGAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWDSTSAIR*
Ga0126381_10404437813300010376Tropical Forest SoilGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR*
Ga0126383_1135476033300010398Tropical Forest SoilEKGTGGAVVNLIAYKGEYVMAQDELKVIDATARDKKCKTPENWSSSSAIR*
Ga0137393_1157350613300011271Vadose Zone SoilTGGAAISLVAYQTEYTATQEELKVIDATARLKKCSTPANWASTSAIR*
Ga0137363_1037073923300012202Vadose Zone SoilYQTEYTATQEELKVIDATARLKKCSTPANWASTSAIR*
Ga0137361_1179134333300012362Vadose Zone SoilVAYQADYTATQDELRVIDATARLKKCKTPENWSSTSAIR*
Ga0137396_1025828913300012918Vadose Zone SoilQGEYTATQEDLKVLDATARLKKCKTPENWGSTSAIR*
Ga0137359_1158365013300012923Vadose Zone SoilEYTATQEELKVIDATARLKKCSTPANWASTSAIR*
Ga0126375_1154506313300012948Tropical Forest SoilVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSSSAIR*
Ga0126375_1171106123300012948Tropical Forest SoilAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSTSAIR*
Ga0182036_1030257713300016270SoilTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0182036_1160477513300016270SoilYKGEYVAAQDELNVIDAIARDKKCKTPENWSSTSAIR
Ga0182032_1038875833300016357SoilVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWESSSATR
Ga0182034_1023195733300016371SoilVNVIAYKGDYVMARDELKLIDATARDKKCKTPENWSSSSAIR
Ga0182034_1033888613300016371SoilISLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0182034_1185472723300016371SoilQLKLLMDKAEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0182038_1049719113300016445SoilISLVAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR
Ga0182038_1069576133300016445SoilAISVVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0213879_1019593113300021439Bulk SoilLVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0126371_1266862223300021560Tropical Forest SoilDKARQATGGAAINLVAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR
Ga0126371_1352826123300021560Tropical Forest SoilGAGGTVVSVIAYKGDYIAAQDELKVIDATAREKKCKTPENWSSTSAIR
Ga0207684_1096875433300025910Corn, Switchgrass And Miscanthus RhizosphereVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0207646_1182748613300025922Corn, Switchgrass And Miscanthus RhizosphereDKARQCTGGAAISLVAYQGEYTATQEELKVIDATARLKKCSTPANSASTSAIR
Ga0307287_1012049313300028796SoilRAERGAGGAFVNVIAYESDYITAREELKLIDATARDKKCVTLDQSSPAIR
Ga0307286_1039668613300028876SoilVSAIAYKGDYRAVQEQLQVIDATARDKKCKSPENSGSTSAVR
Ga0170820_1481982813300031446Forest SoilGDYVMAQDELKLIDATARDKKCKIPENWDSSSAIR
Ga0318516_1016060713300031543SoilVSVIAYKSDYLAAQDELKVIDATARDKKCKPAENWSSTSAIR
Ga0318534_1079498313300031544SoilVIAYKAEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0318541_1032886113300031545SoilLKLLMEKAEKGVGGAFVNVIAYKGEYIGTQDELKVIDATAREKKCKTPENWSSTSAIR
Ga0318515_1034026913300031572SoilGGAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0318515_1062588823300031572SoilMDKARQGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0318515_1072306813300031572SoilTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0310915_1005928613300031573SoilGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0310915_1074755313300031573SoilQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0318542_1077727723300031668SoilELKLLMEKAEKGVGGAFVNVIAYKGEYIGTQDELKVIDATAREKKCKTPENWSSTSAIR
Ga0318561_1015618313300031679SoilAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0318561_1063981613300031679SoilAAISLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0318560_1040846613300031682SoilGDYVMAEDELKLIDATARDKKCKTPENWSSTSAIR
Ga0306917_1138308113300031719SoilYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0318500_1045527713300031724SoilVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0318501_1039580313300031736SoilQSTGGAAISLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0306918_1121305913300031744SoilKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0318492_1051891723300031748SoilAYKGDYLAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0318509_1055104413300031768SoilQSTGGAAISLVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0318546_1006172643300031771SoilAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0318568_1056803713300031819SoilAGGAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0318567_1035031113300031821SoilEQQLKLLMDKAEKGAGGAVVNVIAYKGEYGMAQDELKLIDATARDKKCKTPENWDSSSAI
Ga0306919_1010017913300031879SoilAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR
Ga0306919_1034345933300031879SoilSLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0306925_1015025013300031890SoilQGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0306925_1045211713300031890SoilQGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0306925_1056612333300031890SoilVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0306925_1057428833300031890SoilISLVAYQTEYTATQGELNVIDATARDKKCKTPENWSSTSAIR
Ga0306925_1074162613300031890SoilVVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0306925_1116432223300031890SoilGAAISLVAYQGEYTATQEELKVIDATARLKKCSAPANWASTSAIR
Ga0318520_1027568613300031897SoilNVIAYKSEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0306923_1017114113300031910SoilLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0306923_1181899913300031910SoilAYQGEYTATREELKVIDATARLKKCSTPANWASTSAIR
Ga0306923_1188768913300031910SoilVNVIAYKGDYVMAEDELKLIDATARDKKCKTPENWDSTSAIR
Ga0306921_1008687013300031912SoilKLLMDKAEKGAGGAVVNVIAYKGEYVAAQDELKVIDATVRDKKCKTPENWTSTSAIR
Ga0306921_1036930533300031912SoilAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR
Ga0306921_1079914233300031912SoilAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0310912_1009755213300031941SoilAEKGTGGAVVSVIAYKSDYLAAQDELKVIDATARDKKCKPAENWSSTSAIR
Ga0310912_1009817633300031941SoilGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0310912_1013700713300031941SoilMDKARQGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0310912_1022711913300031941SoilLVAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR
Ga0310912_1085869413300031941SoilAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0310916_1017570023300031942SoilNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSSSAIR
Ga0310913_1006961013300031945SoilYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0310909_1121868813300031947SoilVAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR
Ga0306926_1002429313300031954SoilVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0306926_1019721753300031954SoilGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0306926_1249555113300031954SoilAYKGDYVMAEDELKLIDATARDKKCKTPENWDSTSAIR
Ga0318530_1038357513300031959SoilGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0306922_1014999513300032001SoilAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0306922_1016809633300032001SoilKLLMDKAEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0306922_1104702413300032001SoilDKAEKGAGGAVVNVIAYKGEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR
Ga0318569_1049111323300032010SoilQSTGGAAISLVAYQREYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0318507_1028379913300032025SoilTGGAAISVVAYQGEYTAVQDELKVIDATARLKKCSTPANWASSSAIR
Ga0318533_1071794413300032059SoilLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0318510_1009758013300032064SoilTGGAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0318510_1040651723300032064SoilLMEKARQATGGAMISVVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR
Ga0306924_1219392523300032076SoilKLLMDKAEKGTGGAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSTSAIR
Ga0318577_1060946213300032091SoilGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0306920_10028033513300032261SoilISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR
Ga0306920_10073419433300032261SoilDKARQGTGGAAISVVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR
Ga0306920_10080878823300032261SoilAVVNVIAYKGDYVMAEDELKLIDATARDKKCKTPENWDSSSAIR
Ga0318519_1016543723300033290SoilGALVNVIAYKSEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR


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