Basic Information | |
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Family ID | F086696 |
Family Type | Metagenome |
Number of Sequences | 110 |
Average Sequence Length | 44 residues |
Representative Sequence | VVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Number of Associated Samples | 69 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 1.92 % |
% of genes near scaffold ends (potentially truncated) | 92.73 % |
% of genes from short scaffolds (< 2000 bps) | 80.91 % |
Associated GOLD sequencing projects | 65 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (64.545 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.727 % of family members) |
Environment Ontology (ENVO) | Unclassified (63.636 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (55.455 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.50% β-sheet: 0.00% Coil/Unstructured: 72.50% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Vadose Zone Soil Tropical Forest Soil Bulk Soil Soil Soil Forest Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
KansclcFeb2_02554570 | 2124908045 | Soil | YKGEYVVAQDELKLIDATARDKKCKTPENWGSSSAIR |
AF_2010_repII_A001DRAFT_101232892 | 3300000793 | Forest Soil | MEKAEKGAGGALVNVIAYKGEYVGTQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0066388_1024498522 | 3300005332 | Tropical Forest Soil | MDKAEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0066388_1059850581 | 3300005332 | Tropical Forest Soil | TGGAAISLVAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR* |
Ga0066388_1064750342 | 3300005332 | Tropical Forest Soil | LVAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR* |
Ga0070699_1001366595 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | ISLVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR* |
Ga0070697_1002268843 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR* |
Ga0066905_1005258331 | 3300005713 | Tropical Forest Soil | QGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR* |
Ga0066903_1041316593 | 3300005764 | Tropical Forest Soil | AEQGTGGGFVNVIAYKGDYVAAAEELKVIESTMRVKKCSTPDNWSSTSAIR* |
Ga0066903_1072517552 | 3300005764 | Tropical Forest Soil | EKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0066903_1074140841 | 3300005764 | Tropical Forest Soil | EYAAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0066903_1077987242 | 3300005764 | Tropical Forest Soil | AYKGEYAATQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0066903_1086107031 | 3300005764 | Tropical Forest Soil | AVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTPAIR* |
Ga0075424_1012829261 | 3300006904 | Populus Rhizosphere | VIAYKGDYIAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0075424_1028351111 | 3300006904 | Populus Rhizosphere | SLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR* |
Ga0126374_112935931 | 3300009792 | Tropical Forest Soil | REYAAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0126380_120661572 | 3300010043 | Tropical Forest Soil | AEKGAGGAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSSSAIR* |
Ga0126384_104095951 | 3300010046 | Tropical Forest Soil | KARQATGGAVINVVAYQNEYTATQEELRVIDATARLKKCSTPANWASTSAIR* |
Ga0126384_105693543 | 3300010046 | Tropical Forest Soil | AVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWDSTSAIR* |
Ga0126384_125157262 | 3300010046 | Tropical Forest Soil | VIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0126372_130745791 | 3300010360 | Tropical Forest Soil | AVVNVIAYKAEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0126379_103674911 | 3300010366 | Tropical Forest Soil | DKAEKGTGGAVVSVIAYKSDYLAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0126379_122514401 | 3300010366 | Tropical Forest Soil | LMDKAEKGTGGAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWDSTSAIR* |
Ga0126381_1040443781 | 3300010376 | Tropical Forest Soil | GAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR* |
Ga0126383_113547603 | 3300010398 | Tropical Forest Soil | EKGTGGAVVNLIAYKGEYVMAQDELKVIDATARDKKCKTPENWSSSSAIR* |
Ga0137393_115735061 | 3300011271 | Vadose Zone Soil | TGGAAISLVAYQTEYTATQEELKVIDATARLKKCSTPANWASTSAIR* |
Ga0137363_103707392 | 3300012202 | Vadose Zone Soil | YQTEYTATQEELKVIDATARLKKCSTPANWASTSAIR* |
Ga0137361_117913433 | 3300012362 | Vadose Zone Soil | VAYQADYTATQDELRVIDATARLKKCKTPENWSSTSAIR* |
Ga0137396_102582891 | 3300012918 | Vadose Zone Soil | QGEYTATQEDLKVLDATARLKKCKTPENWGSTSAIR* |
Ga0137359_115836501 | 3300012923 | Vadose Zone Soil | EYTATQEELKVIDATARLKKCSTPANWASTSAIR* |
Ga0126375_115450631 | 3300012948 | Tropical Forest Soil | VIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSSSAIR* |
Ga0126375_117110612 | 3300012948 | Tropical Forest Soil | AVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSTSAIR* |
Ga0182036_103025771 | 3300016270 | Soil | TGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0182036_116047751 | 3300016270 | Soil | YKGEYVAAQDELNVIDAIARDKKCKTPENWSSTSAIR |
Ga0182032_103887583 | 3300016357 | Soil | VNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWESSSATR |
Ga0182034_102319573 | 3300016371 | Soil | VNVIAYKGDYVMARDELKLIDATARDKKCKTPENWSSSSAIR |
Ga0182034_103388861 | 3300016371 | Soil | ISLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0182034_118547272 | 3300016371 | Soil | QLKLLMDKAEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0182038_104971911 | 3300016445 | Soil | ISLVAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR |
Ga0182038_106957613 | 3300016445 | Soil | AISVVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0213879_101959311 | 3300021439 | Bulk Soil | LVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0126371_126686222 | 3300021560 | Tropical Forest Soil | DKARQATGGAAINLVAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0126371_135282612 | 3300021560 | Tropical Forest Soil | GAGGTVVSVIAYKGDYIAAQDELKVIDATAREKKCKTPENWSSTSAIR |
Ga0207684_109687543 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | VAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0207646_118274861 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | DKARQCTGGAAISLVAYQGEYTATQEELKVIDATARLKKCSTPANSASTSAIR |
Ga0307287_101204931 | 3300028796 | Soil | RAERGAGGAFVNVIAYESDYITAREELKLIDATARDKKCVTLDQSSPAIR |
Ga0307286_103966861 | 3300028876 | Soil | VSAIAYKGDYRAVQEQLQVIDATARDKKCKSPENSGSTSAVR |
Ga0170820_148198281 | 3300031446 | Forest Soil | GDYVMAQDELKLIDATARDKKCKIPENWDSSSAIR |
Ga0318516_101606071 | 3300031543 | Soil | VSVIAYKSDYLAAQDELKVIDATARDKKCKPAENWSSTSAIR |
Ga0318534_107949831 | 3300031544 | Soil | VIAYKAEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0318541_103288611 | 3300031545 | Soil | LKLLMEKAEKGVGGAFVNVIAYKGEYIGTQDELKVIDATAREKKCKTPENWSSTSAIR |
Ga0318515_103402691 | 3300031572 | Soil | GGAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0318515_106258882 | 3300031572 | Soil | MDKARQGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0318515_107230681 | 3300031572 | Soil | TGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0310915_100592861 | 3300031573 | Soil | GTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0310915_107475531 | 3300031573 | Soil | QGEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0318542_107772772 | 3300031668 | Soil | ELKLLMEKAEKGVGGAFVNVIAYKGEYIGTQDELKVIDATAREKKCKTPENWSSTSAIR |
Ga0318561_101561831 | 3300031679 | Soil | AYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0318561_106398161 | 3300031679 | Soil | AAISLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0318560_104084661 | 3300031682 | Soil | GDYVMAEDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0306917_113830811 | 3300031719 | Soil | YQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0318500_104552771 | 3300031724 | Soil | VAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0318501_103958031 | 3300031736 | Soil | QSTGGAAISLVAYQAEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0306918_112130591 | 3300031744 | Soil | KGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0318492_105189172 | 3300031748 | Soil | AYKGDYLAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0318509_105510441 | 3300031768 | Soil | QSTGGAAISLVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0318546_100617264 | 3300031771 | Soil | AYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0318568_105680371 | 3300031819 | Soil | AGGAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0318567_103503111 | 3300031821 | Soil | EQQLKLLMDKAEKGAGGAVVNVIAYKGEYGMAQDELKLIDATARDKKCKTPENWDSSSAI |
Ga0306919_101001791 | 3300031879 | Soil | AYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR |
Ga0306919_103434593 | 3300031879 | Soil | SLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0306925_101502501 | 3300031890 | Soil | QGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0306925_104521171 | 3300031890 | Soil | QGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0306925_105661233 | 3300031890 | Soil | VAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0306925_105742883 | 3300031890 | Soil | ISLVAYQTEYTATQGELNVIDATARDKKCKTPENWSSTSAIR |
Ga0306925_107416261 | 3300031890 | Soil | VVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0306925_111643222 | 3300031890 | Soil | GAAISLVAYQGEYTATQEELKVIDATARLKKCSAPANWASTSAIR |
Ga0318520_102756861 | 3300031897 | Soil | NVIAYKSEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0306923_101711411 | 3300031910 | Soil | LVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0306923_118189991 | 3300031910 | Soil | AYQGEYTATREELKVIDATARLKKCSTPANWASTSAIR |
Ga0306923_118876891 | 3300031910 | Soil | VNVIAYKGDYVMAEDELKLIDATARDKKCKTPENWDSTSAIR |
Ga0306921_100868701 | 3300031912 | Soil | KLLMDKAEKGAGGAVVNVIAYKGEYVAAQDELKVIDATVRDKKCKTPENWTSTSAIR |
Ga0306921_103693053 | 3300031912 | Soil | AYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0306921_107991423 | 3300031912 | Soil | AISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0310912_100975521 | 3300031941 | Soil | AEKGTGGAVVSVIAYKSDYLAAQDELKVIDATARDKKCKPAENWSSTSAIR |
Ga0310912_100981763 | 3300031941 | Soil | GAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0310912_101370071 | 3300031941 | Soil | MDKARQGTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0310912_102271191 | 3300031941 | Soil | LVAYQGEYTATQEELKVIDATARLKKCSTPANWSSTSAIR |
Ga0310912_108586941 | 3300031941 | Soil | AVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0310916_101757002 | 3300031942 | Soil | NVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSSSAIR |
Ga0310913_100696101 | 3300031945 | Soil | YKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0310909_112186881 | 3300031947 | Soil | VAYQGEYTAVQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0306926_100242931 | 3300031954 | Soil | VIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0306926_101972175 | 3300031954 | Soil | GGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0306926_124955511 | 3300031954 | Soil | AYKGDYVMAEDELKLIDATARDKKCKTPENWDSTSAIR |
Ga0318530_103835751 | 3300031959 | Soil | GGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0306922_101499951 | 3300032001 | Soil | AAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0306922_101680963 | 3300032001 | Soil | KLLMDKAEKGAGGAVVNVIAYKGEYAAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0306922_110470241 | 3300032001 | Soil | DKAEKGAGGAVVNVIAYKGEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR |
Ga0318569_104911132 | 3300032010 | Soil | QSTGGAAISLVAYQREYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0318507_102837991 | 3300032025 | Soil | TGGAAISVVAYQGEYTAVQDELKVIDATARLKKCSTPANWASSSAIR |
Ga0318533_107179441 | 3300032059 | Soil | LVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0318510_100975801 | 3300032064 | Soil | TGGAVVNVIAYKGEYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0318510_104065172 | 3300032064 | Soil | LMEKARQATGGAMISVVAYQGEYTATQEELKVIDATARLKKCSTPANWASTSAIR |
Ga0306924_121939252 | 3300032076 | Soil | KLLMDKAEKGTGGAVVNVIAYKGDYVMAQDELKLIDATARDKKCKTPENWSSTSAIR |
Ga0318577_106094621 | 3300032091 | Soil | GTGGAAISLVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0306920_1002803351 | 3300032261 | Soil | ISLVAYQGEYTATQDELKVIDATARLKKCSTPANWTSTSAIR |
Ga0306920_1007341943 | 3300032261 | Soil | DKARQGTGGAAISVVAYQGEYTATQDELKVIDATARLKKCSTPANWASTSAIR |
Ga0306920_1008087882 | 3300032261 | Soil | AVVNVIAYKGDYVMAEDELKLIDATARDKKCKTPENWDSSSAIR |
Ga0318519_101654372 | 3300033290 | Soil | GALVNVIAYKSEYVAAQDELKVIDATARDKKCKTPENWSSTSAIR |
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