Metagenome Family F086493

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086493
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	56 residues
Representative Sequence	MSIKDEVDAYREGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKESQNEVK
Number of Associated Samples	78
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	68.47 %
% of genes near scaffold ends (potentially truncated)	25.45 %
% of genes from short scaffolds (< 2000 bps)	77.27 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (39.091 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (50.909 % of family members)
Environment Ontology (ENVO)	Unclassified (90.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (87.273 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1TB03JUN2009E_0178474 2TB03JUN2009E_0261871 3TB18AUG2009E_00004031 4TBL_comb48_EPIDRAFT_10140302 5JGI24028J26656_10041063 6JGI24218J26658_10202531 7JGI24219J26650_10395102 8JGI24891J29808_10053204 9JGI24890J29729_10061588 10JGI26470J50227_10047847 11JGI26470J50227_10315001 12Ga0007850_10023352 13Ga0007847_1022661 14Ga0007865_10193541 15Ga0007846_10059082 16Ga0007846_10155522 17Ga0007846_10172482 18Ga0007817_10007457 19Ga0007838_10083312 20Ga0007869_10015169 21Ga0007869_10087141 22Ga0007879_10024573 23Ga0007879_10103852 24Ga0007877_10071392 25Ga0007872_10029203 26Ga0031655_103333691 27Ga0007829_101189501 28Ga0065176_10069152 29Ga0065170_10528882 30Ga0007804_10291653 31Ga0007804_10406372 32Ga0007804_11800262 33Ga0007854_100651655 34Ga0007854_102563752 35Ga0007854_104730142 36Ga0007876_11588631 37Ga0007806_10255633 38Ga0007810_10061772 39Ga0007813_11135031 40Ga0007882_102927081 41Ga0007882_102986601 42Ga0007819_10667213 43Ga0007833_10839191 44Ga0007871_10027797 45Ga0007815_10062341 46Ga0007818_10965101 47Ga0007866_10259754 48Ga0114951_100944332 49Ga0114951_104568391 50Ga0164296_10061873 51Ga0164296_10311261 52Ga0164296_13744542 53Ga0164296_13854932 54Ga0164297_100744013 55Ga0164297_101990221 56Ga0164297_102497863 57Ga0164297_103338812 58Ga0214207_10415262 59Ga0214246_10104782 60Ga0214202_10230082 61Ga0214170_10282003 62Ga0214201_10376532 63Ga0214172_10581873 64Ga0214174_1030973 65Ga0214193_10145324 66Ga0214206_10170522 67Ga0214164_11038012 68Ga0214164_11065832 69Ga0214166_100064112 70Ga0214192_11046622 71Ga0212088_100705827 72Ga0248169_10485915 73Ga0248169_11259313 74Ga0208502_10096833 75Ga0208255_1262942 76Ga0208620_100000822 77Ga0208382_10096843 78Ga0208738_10263242 79Ga0208738_10630742 80Ga0208871_10273492 81Ga0208871_10293442 82Ga0208251_10325363 83Ga0208387_10114433 84Ga0208387_10563532 85Ga0207955_10287531 86Ga0208876_10225971 87Ga0208876_10368811 88Ga0208745_10190892 89Ga0208865_10226271 90Ga0208614_10408392 91Ga0208746_10043794 92Ga0208746_10366573 93Ga0208506_10001054 94Ga0208497_10196871 95Ga0208497_10686102 96Ga0208110_10016014 97Ga0208872_100061530 98Ga0209777_102884344 99Ga0209777_107196181 100Ga0316219_10558073 101Ga0316219_10946582 102Ga0316219_11124884 103Ga0316219_13346521 104Ga0316220_10032103 105Ga0316220_10276253 106Ga0316218_11158433 107Ga0316228_10928875 108Ga0316228_12765953 109Ga0316221_10566227 110Ga0316229_13079011
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1TB03JUN2009E_0178474 2TB03JUN2009E_0261871 3JGI24028J26656_10041063 4JGI24218J26658_10202531 5Ga0007847_1022661 6Ga0007846_10155522 7Ga0031655_103333691 8Ga0007804_11800262 9Ga0007882_102927081 10Ga0007882_102986601 11Ga0007833_10839191 12Ga0214192_11046622 13Ga0208746_10366573 14Ga0209777_102884344
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1TB03JUN2009E_0178474 2TB03JUN2009E_0261871 3JGI24028J26656_10041063 4JGI24218J26658_10202531 5Ga0007847_1022661 6Ga0007846_10155522 7Ga0031655_103333691 8Ga0007804_11800262 9Ga0007882_102927081 10Ga0007882_102986601 11Ga0007833_10839191 12Ga0214192_11046622 13Ga0208746_10366573 14Ga0209777_102884344
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 87.04% β-sheet: 0.00% Coil/Unstructured: 12.96%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04404	ERF	7.27
PF12728	HTH_17	3.64
PF13539	Peptidase_M15_4	2.73
PF05866	RusA	1.82
PF11351	GTA_holin_3TM	1.82
PF00145	DNA_methylase	0.91
PF01391	Collagen	0.91
PF02557	VanY	0.91
PF14549	P22_Cro	0.91
PF03237	Terminase_6N	0.91

Showing 1 to 10 of 12 entries

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COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	1.82
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.91
COG1876	LD-carboxypeptidase LdcB, LAS superfamily	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	10.91 %
Unclassified	root	N/A	32.73 %
Viruses	superkingdom	All Organisms → Viruses	56.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.91 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	39.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	39.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Unclassified	root	N/A	32.73 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	39.09 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	39.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.82 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	34.55 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	1.82 %
Unclassified	root	N/A	32.73 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	34.55 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Unclassified	root	N/A	32.73 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	1.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	34.55 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	17.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
Synechococcus phage S-CBS4	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4	1.82 %
Unclassified	root	N/A	32.73 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	34.55 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000176\|TB03JUN2009E_c017847	All Organisms → Viruses → Predicted Viral	1115	Open in IMG/M
3300000176\|TB03JUN2009E_c026187	Not Available	840	Open in IMG/M
3300000203\|TB18AUG2009E_c000040	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	42000	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1014030	Not Available	4076	Open in IMG/M
3300002091\|JGI24028J26656_1004106	All Organisms → cellular organisms → Bacteria → Proteobacteria	2341	Open in IMG/M
3300002092\|JGI24218J26658_1020253	Not Available	909	Open in IMG/M
3300002098\|JGI24219J26650_1039510	Not Available	550	Open in IMG/M
3300002301\|JGI24891J29808_1005320	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1384	Open in IMG/M
3300002307\|JGI24890J29729_1006158	All Organisms → Viruses → Predicted Viral	3671	Open in IMG/M
3300003375\|JGI26470J50227_1004784	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3865	Open in IMG/M

Showing 1 to 10 of 110 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	11.82%
Lentic	Environmental → Aquatic → Freshwater → Lentic	88.18%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	14.55%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	10.91%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	55.45%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	11.82%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	50.91%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	14.55%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	10.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.09%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	4.55%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.82%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.91%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.73%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	4.55%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000203	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002091	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome	Environmental	Open in IMG/M
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002098	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome	Environmental	Open in IMG/M
3300002301	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8	Environmental	Open in IMG/M
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M

Showing 1 to 10 of 78 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009E_0178474	3300000176	Freshwater	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIXWIRKHQGVQNETE*
TB03JUN2009E_0261871	3300000176	Freshwater	MSIKDEVDAYREGFADGKKFVLDMIAESTKHKFEDIADLIIWIRQQKEFKNEVK*
TB18AUG2009E_00004031	3300000203	Freshwater	MSIKDEVDAYREGFADGKQFMLEMIKESTKQEFEDIADLIIWIRKQEFQNEVK*
TBL_comb48_EPIDRAFT_10140302	3300000439	Freshwater	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKQEFQNEVK*
JGI24028J26656_10041063	3300002091	Lentic	MTIKDQLDAYKEGYADGKQSVFEMISEATQHKFEDIAQLIIWIRKQESQNEVK*
JGI24218J26658_10202531	3300002092	Lentic	MGIKDELEAYKEGYAHGKQFVLDFVNQTTKQDFKELVDLIIWIRKQESQNEVK*
JGI24219J26650_10395102	3300002098	Lentic	MGIKDELDAYKEGYADGKQFVLDFVNQTTKQDFKELVDLIIWIRKQESQNEVK*
JGI24891J29808_10053204	3300002301	Lentic	MQNTMENNMGIKDELEAYKEGYTDGKQFVLDFVNQTTKQDFKELVDLIIWIRKQESQNEVK*
JGI24890J29729_10061588	3300002307	Lentic	MSIKDQLDAYKEGYADGKQSVFEMISEATQHKFEDIAQLIIWIRKQESQNEVK*
JGI26470J50227_10047847	3300003375	Freshwater	MTIKDELDSYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE*
JGI26470J50227_10315001	3300003375	Freshwater	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE*
Ga0007850_10023352	3300003783	Freshwater	MNMMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEVK*
Ga0007847_1022661	3300003793	Freshwater	MHHATNMMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIA
Ga0007865_10193541	3300003796	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKE
Ga0007846_10059082	3300003797	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKEFQNEVK*
Ga0007846_10155522	3300003797	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK*
Ga0007846_10172482	3300003797	Freshwater	MNMMVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQEYQNEVK*
Ga0007817_10007457	3300003804	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEVK*
Ga0007838_10083312	3300003805	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADIAQLIIWIRQQQESQNEVK*
Ga0007869_10015169	3300003809	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK*
Ga0007869_10087141	3300003809	Freshwater	GNNMALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKEFQNEVK*
Ga0007879_10024573	3300003813	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKEFQNEVK*
Ga0007879_10103852	3300003813	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEVK*
Ga0007877_10071392	3300003814	Freshwater	MMVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK*
Ga0007872_10029203	3300003826	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQNEVK*
Ga0031655_103333691	3300003852	Freshwater Lake Sediment	MLVKDKLDYYKEGFRDGEQFVLDFIKQSTKQEFKELTELIIWIRKHQGVQNETE*
Ga0007829_101189501	3300004095	Freshwater	VKDKLDYYKEGFRDGEQFVLDFIKQSTKQEFKELTELIIWIRKHQGVQNETK*
Ga0065176_10069152	3300004691	Freshwater	MSIKDEVDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRQQESKNETK*
Ga0065170_10528882	3300004694	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQESQNEIK*
Ga0007804_10291653	3300004770	Freshwater	MTIKDELDAYREGFRDGKQFVLDFIKQSTRQEFEDVTDLIVWIREKEFQNETK*
Ga0007804_10406372	3300004770	Freshwater	MMGNNMALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKEFQNEVK*
Ga0007804_11800262	3300004770	Freshwater	MHHATNMTGNNMSIKDEVDAYREGFANGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQNEVK*
Ga0007854_100651655	3300004806	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQ
Ga0007854_102563752	3300004806	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADIAQLIIWIRQQQESQNEVK*
Ga0007854_104730142	3300004806	Freshwater	MHHATNMMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKES
Ga0007876_11588631	3300006071	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQ
Ga0007806_10255633	3300006100	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQN
Ga0007810_10061772	3300006101	Freshwater	MMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK*
Ga0007813_11135031	3300006103	Freshwater	NMMGNNMALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKESQNEVK
Ga0007882_102927081	3300006104	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLI
Ga0007882_102986601	3300006104	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADIAQ
Ga0007819_10667213	3300006105	Freshwater	MALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKESQNEVK*
Ga0007833_10839191	3300006106	Freshwater	TWSGKRLNNHKMNMTGNNMSIKDEVDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRQQESKNETK*
Ga0007871_10027797	3300006110	Freshwater	MMVNNMSLVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK*
Ga0007815_10062341	3300006114	Freshwater	SGKRLNNHKMNMTGNNMSIKDEVDAYRDGFRDGKQFVLEMIKESTKQEFKDIADLIIWIRQQEFQNEVK*
Ga0007818_10965101	3300006117	Freshwater	VDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEVK*
Ga0007866_10259754	3300006119	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQESQNEIK*
Ga0114951_100944332	3300009502	Freshwater	MENNMSIKDELDAYKEGYADGKQFVLDFVNQTTKQDFKELVDLIIWIRKQESQNEVK*
Ga0114951_104568391	3300009502	Freshwater	MTIKDQLDAYKEGYADGKQSVFEMISEATQHKFEDIAQLIIWIRKQEESSKNE*
Ga0164296_10061873	3300013093	Freshwater	MVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQESQNEVK*
Ga0164296_10311261	3300013093	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQ
Ga0164296_13744542	3300013093	Freshwater	MSIKNEVDAYKEGFKDGKQFVLEMIKESTKQEFKDIADLIIWIRQQESKNETK*
Ga0164296_13854932	3300013093	Freshwater	MTIKDELDTYREGFRDGKQFVLEMIKESTKQEFEDVADLIIWIRKHQGVQNETE*
Ga0164297_100744013	3300013094	Freshwater	MIGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQEFQNEIK*
Ga0164297_101990221	3300013094	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFVDIAQLIIWIRQQQESQNEIK*
Ga0164297_102497863	3300013094	Freshwater	MTIKDELDTYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNE
Ga0164297_103338812	3300013094	Freshwater	MNMMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQNEVK*
Ga0214207_10415262	3300020716	Freshwater	MSIKDEVDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKQEFQNEVK
Ga0214246_10104782	3300020727	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADIAQLIIWIRQQQESQNEVK
Ga0214202_10230082	3300020728	Freshwater	MSIKDEVDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE
Ga0214170_10282003	3300020731	Freshwater	MSIKDEVDAYREGFANGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQNEVK
Ga0214201_10376532	3300020732	Freshwater	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE
Ga0214172_10581873	3300020733	Freshwater	MVNNMSIKDEVDAYREGFANGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQNEVK
Ga0214174_1030973	3300021115	Freshwater	MLVKDKLDYYKEGFRDGEQFVLDFIKQSTKQEFKELTELIIWIRKHQGVQNETE
Ga0214193_10145324	3300021127	Freshwater	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKQEFQNEVK
Ga0214206_10170522	3300021131	Freshwater	MVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADIADLIIWIRQQKEFQNEVK
Ga0214164_11038012	3300021138	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAESTKNKFEDIADLIIWIRQQKEPQNEVK
Ga0214164_11065832	3300021138	Freshwater	MVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADIADLIIWIRRQQESQNEVK
Ga0214166_100064112	3300021139	Freshwater	MSIKDEVDAYREGFADGKQFMLEMIKESTKQEFEDIADLIIWIRKQEFQNEVK
Ga0214192_11046622	3300021142	Freshwater	MPIKDELDAYKEGFRDGKRFVLDFIKQSTKQEFEDVTDLIVWIREQESKQ
Ga0212088_100705827	3300022555	Freshwater Lake Hypolimnion	MQNTMENNMSIKDELDAYKEGYADGKQFVLDFVNQTTKQDFKELVDLIIWIRKQESQNEV
Ga0248169_10485915	3300022602	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQEFQNEIK
Ga0248169_11259313	3300022602	Freshwater	MTIKDELDAYKEGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE
Ga0208502_10096833	3300025339	Freshwater	MSIKDEVDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRQQESKNETK
Ga0208255_1262942	3300025353	Freshwater	MNMMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEV
Ga0208620_100000822	3300025368	Freshwater	MMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEVK
Ga0208382_10096843	3300025369	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEVK
Ga0208738_10263242	3300025379	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKEFQNEVK
Ga0208738_10630742	3300025379	Freshwater	MSIKDEVDAYRDGFRDGKQFVLEMIKESTKQEFKDIADLIIWIRQQEFQNEVK
Ga0208871_10273492	3300025381	Freshwater	MGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK
Ga0208871_10293442	3300025381	Freshwater	MNMMVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQEYQNEV
Ga0208251_10325363	3300025398	Freshwater	MGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEVK
Ga0208387_10114433	3300025400	Freshwater	MALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKEFQNEVK
Ga0208387_10563532	3300025400	Freshwater	MVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQEYQNEVK
Ga0207955_10287531	3300025401	Freshwater	PRSRHHATNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEVK
Ga0208876_10225971	3300025402	Freshwater	YGPRSRHHAMNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK
Ga0208876_10368811	3300025402	Freshwater	NMMGNNMALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKEFQNEVK
Ga0208745_10190892	3300025403	Freshwater	MMVNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEIK
Ga0208865_10226271	3300025411	Freshwater	DAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKEFQNEVK
Ga0208614_10408392	3300025413	Freshwater	MALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKESQNEVK
Ga0208746_10043794	3300025423	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEI
Ga0208746_10366573	3300025423	Freshwater	SNWYGPRSRHHAMNMMGNNMALVDELDAYKQGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKEFQNEVK
Ga0208506_10001054	3300025428	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAQSTKNKFEDIADLIIWIRQQKESQNEVK
Ga0208497_10196871	3300025466	Freshwater	MTIKDELDAYREGFRDGKQFVLDFIKQSTRQEFEDVTDLIVWIREKEFQNETK
Ga0208497_10686102	3300025466	Freshwater	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADIAQLIIWIRQQQESQNEIK
Ga0208110_10016014	3300025777	Freshwater	MHHATNMMVNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEVK
Ga0208872_100061530	3300025838	Freshwater	MNMTGNNMSIKDEVDAYREGFADGKQFVLDMIAQSTKHKFEDIADLIIWIRQQKESQNEV
Ga0209777_102884344	3300027896	Freshwater Lake Sediment	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFKELTELIIWIRK
Ga0209777_107196181	3300027896	Freshwater Lake Sediment	MALVDELDAYKQGFADGKQFVLDMISESTQHKFADVAQLIIWIRQQQESQNEVK
Ga0316219_10558073	3300031759	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAESTKHKFEDIADLIIWIRQQKESQNEVK
Ga0316219_10946582	3300031759	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQESQNEI
Ga0316219_11124884	3300031759	Freshwater	MNMMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADIADLIIWIRRQQESQNEI
Ga0316219_13346521	3300031759	Freshwater	MTIKDELDSYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE
Ga0316220_10032103	3300031884	Freshwater	MMGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFVDVAQLIIWIRQQQESQNEIK
Ga0316220_10276253	3300031884	Freshwater	MSIKDEVDAYREGFADGKQFVLDMIAESTKNKFEDIADLIIWIRQQKESQNEVK
Ga0316218_11158433	3300032117	Freshwater	MGNNMALVDELDAYKQGFADGKQFVLDMISESTQHKFADIADLIIWIRRQQESQNEIK
Ga0316228_10928875	3300032579	Freshwater	KDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIRKHQGVQNETE
Ga0316228_12765953	3300032579	Freshwater	KMNMTGNNMSIKDEVDAYREGFADGKQFVLDMIAESTKNKFEDIADLIIWIRQQKESQNEVK
Ga0316221_10566227	3300032665	Freshwater	MNMMVNNMSIKDEVDAYREGFADGKKFVLDMIAESTKHKFEDIADLIIWIRQQKEFKNEV
Ga0316229_13079011	3300032676	Freshwater	MTIKDELDAYREGFRDGKQFVLEMIKESTKQEFEDIADLIIWIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086493

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences