Metagenome / Metatranscriptome Family F086480

Basic Information
Family ID	F086480
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	53 residues
Representative Sequence	SEEKEQLAEAPKPSLTATAPQQPVRIPPVVAAQGAPAPARVAGWEEAAKRWP
Number of Associated Samples	98
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	25.00 %
% of genes near scaffold ends (potentially truncated)	2.73 %
% of genes from short scaffolds (< 2000 bps)	3.64 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Most Common Taxonomy
Group	Unclassified (97.273 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (16.364 % of family members)
Environment Ontology (ENVO)	Unclassified (49.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.818 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.50% β-sheet: 0.00% Coil/Unstructured: 92.50%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF16870	OxoGdeHyase_C	57.27
PF14534	DUF4440	3.64
PF04014	MazE_antitoxin	1.82
PF01048	PNP_UDP_1	1.82
PF01548	DEDD_Tnp_IS110	0.91
PF01895	PhoU	0.91
PF13620	CarboxypepD_reg	0.91
PF02656	DUF202	0.91
PF02954	HTH_8	0.91
PF13492	GAF_3	0.91
PF00491	Arginase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	1.82
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	1.82
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	1.82
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.91
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
All Organisms	root	All Organisms	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
cellular organisms	root	All Organisms → cellular organisms	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Scaffold	Taxonomy	Length	IMG/M Link
3300010376\|Ga0126381_104413895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300011053\|Ga0138531_128968	Not Available	592	Open in IMG/M
3300021407\|Ga0210383_10849001	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300028868\|Ga0302163_10104197	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.64%
Aquatic	Environmental → Aquatic	46.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.18%
Freshwater	Environmental → Aquatic → Freshwater	40.91%
Sediment	Environmental → Aquatic → Sediment	5.45%
Peat	Environmental → Terrestrial → Peat	5.45%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	40.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.91%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	25.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.55%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	16.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	10.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.55%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004471	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009760	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_100	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011053	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011085	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025454	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes)	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_102462542	3300001356	Peatlands Soil	RVAAPLLSEEKEQIAEAPKPTLTAAPPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
JGI25616J43925_100485802	3300002917	Grasslands Soil	LRVAAPLLSEEKEQMAEAPKPSLAATGPQQPVRIPPVVAAQGSAAPARVAGWEEAAKRWP
JGI25616J43925_103842751	3300002917	Grasslands Soil	KPSLAATGPQQPVRIPPVVAAQGSAAPARVAGWEEAAKRWP*
Ga0062384_1007624461	3300004082	Bog Forest Soil	KPTLTAAPTPQPVRIPPVVAAQGGSAPARVAGWEDAAKRWP*
Ga0058900_13735452	3300004099	Forest Soil	APLLSEEKEQIAEAPKPSLTATATQQPVRIPPVVAAAPAPARVAGWEEAAKRWP*
Ga0068965_12932291	3300004471	Peatlands Soil	KEQLAEAPKPSLAASAPQPVRIPQAVNAQTANPPARGAGWEEAAKRWP*
Ga0068972_15908381	3300004478	Peatlands Soil	EVEALRIAAPLLSEEKEQLAEAPKPSLAASAPQPVRIPQAVNAQTANPPARGAGWEEAAKRWP*
Ga0066677_105100642	3300005171	Soil	EALRVAAPLLSEEKEQLSEAPKPSLTATAPQQPVRIPPVVAAANPPARVAGWEEAAKRWP
Ga0070697_1016481221	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	EVEALRVAAPLLSEEKEQAEAPKPNLTANGPQQPIRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0066691_102299541	3300005586	Soil	APLLSEEKEQLSEAPKPSLTATAPQQPVRIPPVVAAANPPARVAGWEEAAKRWP*
Ga0070763_107774402	3300005610	Soil	SLTATAPPQPVRIPPVVAAQGGAAPARVAGWEDAAKRWP*
Ga0066789_100310562	3300005994	Soil	TAALPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0075029_1011872111	3300006052	Watersheds	AAPPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0097691_10742222	3300006055	Arctic Peat Soil	KEQQRAEVPKPSLTASAPQQPVRIPPVVDAQASNAPSRVAGWEEAAKRWP*
Ga0075017_1010642132	3300006059	Watersheds	LSDEKEPLAEAPKPSLTAAPPQPVRIPPVVAAQGGAAPARVAGWEDAAKRWP*
Ga0075017_1012559421	3300006059	Watersheds	APPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0075017_1014227201	3300006059	Watersheds	TAAPPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0075019_107946562	3300006086	Watersheds	VEALRVAAPLLSEDKEQIADVPKPTLTATTPQPPIRIPASVAAQAVNPPVRAAGWEDAAKRWP*
Ga0116218_13391211	3300009522	Peatlands Soil	EQLAEAPKPTLTATTPPQPVRIPPVVAAQAAPTPARVAGWEDAAKRWP*
Ga0116138_10355932	3300009552	Peatland	LKPSLTATAPPQPVRIPPVVATQAAPAPARVAGWEDAAKRWP*
Ga0116138_10490601	3300009552	Peatland	TLAEAPKPSLTATAPPQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0116127_11328442	3300009618	Peatland	APPQPVRIPPVVATQAAPAPARVAGWEDAAKRWP*
Ga0116115_11315722	3300009631	Peatland	PSLTATAPPQPVRIPPVVATQAAPAPARVAGWEDAAKRWP*
Ga0116118_10743962	3300009637	Peatland	AEAPKPSLTATAPPQPVRIPPVVAAQGGSAPARVAGWEDAAKRWP*
Ga0116106_11671001	3300009645	Peatland	EAPKPSLTTTAPPQPVRIPQAVAAQAGSQPARAAGWEEAAKRWP*
Ga0116132_12224422	3300009646	Peatland	PKPSLTATAPPQPVRIPPVVSAQGATAPARVAGWEDAAKRWP*
Ga0116215_13840151	3300009672	Peatlands Soil	PLLSEEKEQIAEAPKPTLTAAPPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0116131_10569891	3300009760	Peatland	PSLTATAPPQPVRIPPVVAAQGATAPARVADWEDAVKRWP*
Ga0116223_104113351	3300009839	Peatlands Soil	KETLAEAPKPSLTTTAPPQPVRVPSVVAAQAANPPARVAGWEDAAKRWP*
Ga0126381_1044138952	3300010376	Tropical Forest Soil	LEKEVEALRVAAPLLSEEKEGMDAPKPTLAATPAPQQPIRIPAPVAAAATAPPARAAGWEDTAKRWP*
Ga0136449_1004526683	3300010379	Peatlands Soil	APLLSEEKETLAEAPKPSLTTTAPPQPVRVPSVVAAQAANPPARVAGWEDAAKRWP*
Ga0136449_1026706862	3300010379	Peatlands Soil	LSEEKEQLAEAPKPSLAASAPQPVRIPQAVNAQAANPPARGAGWEEAAKRWP*
Ga0138531_1289682	3300011053	Peatlands Soil	LRIAAPLLSDEKEQQSEAPKPSLAATPQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0138581_10918351	3300011085	Peatlands Soil	PLLSEEKETLAEAPKPSLTTTAPPQPVRVPSVVAAQAANPPARVAVWEDAAKRWP*
Ga0150983_103820381	3300011120	Forest Soil	EKEVEALRVAAPLLSEEKEQIAEAPKPSLTATATQQPVRIPPVVAAAPAPARVAGWEEAAKRWP*
Ga0150983_148872471	3300011120	Forest Soil	SLTATAPQQPVRIPPVVAAAPAPARVAGWEEAAKRWP*
Ga0150983_149368711	3300011120	Forest Soil	EVEALRVAAPLLSEEKEQIAEAPKPSLTATAAQQPVRIPPVVAAAPAPARVAGWEEAAKRWP*
Ga0137391_113471601	3300011270	Vadose Zone Soil	NGPQQPIRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0137393_101059611	3300011271	Vadose Zone Soil	APKPTLTANGPQQPIRIPPVVAAQGATAPARVAGWEDAAKRWP*
Ga0137393_107089091	3300011271	Vadose Zone Soil	APLLSEEKEQLSEAPKPSLTATAPQQPVRIPPVVAAAPAPARVAGWEEAAKRWP*
Ga0137388_108654511	3300012189	Vadose Zone Soil	ALRVAAPLLSEEKEQAEAPKPTLTANGPQQPIRIPPVVAAQGSTAPARVAGWEDAAKRWP
Ga0137397_109614061	3300012685	Vadose Zone Soil	TATAPQQPVRIPPVVAAAPAPARVAGWEEAAKRWP*
Ga0137395_109855792	3300012917	Vadose Zone Soil	RVAAPLLSEEKEQIAEAPKPSLTATATQQPVRIPPIVAAANPPARVAGWEEAAKRWP*
Ga0137396_104508841	3300012918	Vadose Zone Soil	ALRVAAPLLSEEKEPMSEAPKPSLTATGPQQPVRIPPVVAAQGAPAPARVAGWEEAAKRWP*
Ga0181533_12087151	3300014152	Bog	VAAPLLSDEKEPLVEVPKPSLTATAPPQPVRIPPVVTTQAAPAPARVAGWEDAAKRWP*
Ga0181527_10713663	3300014153	Bog	LRVAAPLLSDEKETLAEMPKPVMAAAAPPQPARISPVVAAQVMPPQSRAVGWEDAAKRWP
Ga0181527_13930142	3300014153	Bog	EALRVAAPLLSDEKEPLVEVPKPSLTATAPPQPVRIPPVVTTQAAPAPARVAGWEDAAKRWP*
Ga0181524_101629612	3300014155	Bog	VEALRVAAPLLSDEKEPLVEVPKPSLTATAPPQPVRIPPVVTTQAAPAPARVAGWEDAAKRWP*
Ga0181526_102534352	3300014200	Bog	ALRIAAPLLSEEKEPFAEAPKPSLTATAPPQPVRNPPVVAAQSAAPPARVVGWDDAAKRWP*
Ga0181537_103211981	3300014201	Bog	EALRVAAPLLSEEKEPIMEAPKPTLTTANPQQPIRIPAPVAAQAVNPPVRAAGWEDAAKRWP*
Ga0182017_106883702	3300014494	Fen	ALRVAAPLLADEKEALSEAPKPSLTATAPQPVRIPPVVAAQGATGPARVAGWEEAAKRWP
Ga0182012_102063952	3300014499	Bog	KEVEALRVAAPLLSDEKESLAEAPKPSLTATPSPQPVRIPPVVAAQGGGAPARVAGWEDAAKRWP*
Ga0182021_108264621	3300014502	Fen	EALSEAPKPSLTATAPQPVRIPPVVAAQGATGPARVAGWEEAAKRWP*
Ga0182021_112730901	3300014502	Fen	SLTAAVLQQPVRIPPVVAAQGANAPARVAGWEDAAKRWP*
Ga0181536_100697822	3300014638	Bog	LRVAAPLLSEEKEQIAEAPKPTLTAAPPQQPVRIPPVVAAQGAAAPARVAGWEDAAKRWP
Ga0187818_103855852	3300017823	Freshwater Sediment	LEKEVEALRVAAPLLSDEKEPVAEAPKPSLTAAPAQPVRIPPVVAAQAANAPTRVAGWEEAAKRWP
Ga0187854_103187652	3300017938	Peatland	RLEKEVEALRIAAPLLSEEKEQLAEAPKPSLAASAPQPVRIPQAVNAQAANPPARGAGWEEAAKRWP
Ga0187853_104654791	3300017940	Peatland	EKEVEALRIAAPLLSEEKETLAEAPKPSLTTNVPPQPVRIPQAVAAQAANPPARAAGWEEAAKRWP
Ga0187879_100275481	3300017946	Peatland	TAAAPPQPVRVPAVVAAQGAAAPARVAGWEDAAKRWP
Ga0187879_107383002	3300017946	Peatland	LEKEVEALRIAAPLLSEEKEPLAEAPKPSLIATAPPQAVRNPSVAAAQSASPARAVGWEDGAKRWP
Ga0187817_100078466	3300017955	Freshwater Sediment	LRVAAPLLSEEKEQLAEAPKPTLTTATPPQPVRIPPVVAAQAAPTPARVAGWEDAAKRWP
Ga0187816_103332982	3300017995	Freshwater Sediment	LRVAAPLLSDEKEQQLAEMPKPSLTANAPQQPVRIPPVVAAQAANAPSRVAGWEEAAKRW
Ga0187815_103983012	3300018001	Freshwater Sediment	LLSEEKEQQGEAPKPSLAASAPQPVRIPQAVNAQTANSPARGAGWEEAAKRWP
Ga0187865_12090412	3300018004	Peatland	LLSDEKEPLVEVLKPSLTVTAPPQPVRIPPVVAAQGATAPARVADWEDAVKRWP
Ga0187878_12852881	3300018005	Peatland	EVEALRVAAPLLSEEKEQLAEAPKPSLTATVPPQPVRVPPVVAAQAANPPARVAGWEDAANRWP
Ga0187805_103996721	3300018007	Freshwater Sediment	EALRVAAPLLSEEKEPLAEAPKPSLTATAPQQPIRISAPVAAQAVNPPRAAGWEDAAKRW
Ga0187884_101605782	3300018009	Peatland	EEKEQIAEAPKPTLTAAPPQQPVRIPPVVAAQGAAAPARVAGWEDAAKRWP
Ga0187873_11246112	3300018013	Peatland	ARLEKEVEALRIAAPLLSEEKEQMAEAPKPSLAASAPQPVRIPQAVNAQAANPPARGAGWEEAAKRWP
Ga0187872_103350791	3300018017	Peatland	VEALRVAAPLLSEEKEQLTEAPKPSLAAAPPTQPVRIPPVVAAQGGSAPARVAGWEEAAKRWP
Ga0187886_12102181	3300018018	Peatland	VAAPLLSDEKEILAEAPKPSLTATAPPQPVRIPPVVAAQGATAPARVAGWEDAAKRWP
Ga0187881_101914533	3300018024	Peatland	KPSLTATVPPQPVRVPPVVAAQAANPPARVAGWEDAAKRWP
Ga0187857_102368921	3300018026	Peatland	LEKEVEALRIAAPLLSEEKEQLAEAPKPSLAASAPQPVRIPQAVNAQAANPPARGAGWEEAAKRWP
Ga0187875_104482941	3300018035	Peatland	TAPPQPVRIPPVVAAQVANAPARVAGWEDAAKRWP
Ga0187855_108552121	3300018038	Peatland	KEQITEAPKPTLTAAPPQQPARMATVPATQAPPAQARAVGWEDAAKRWP
Ga0187871_101783852	3300018042	Peatland	EQLMEAPKPTLAANTPPQPVRIPPVVAAQGGAAPARVAGWEDAAKRWP
Ga0187871_108665812	3300018042	Peatland	PLLSEEKESLAEAPKPSLTTTAPPQPVRIPQAVAAQAGSQPARAAGWEEAAKRWP
Ga0187887_103993262	3300018043	Peatland	LRVAAPLLSDEKEQQTEAARPSLTAAPPPQPVRIPPVVAAQGASAPARVAGWEDAAKRWP
Ga0187851_108238091	3300018046	Peatland	LSEEKESLAEAPKPSLTTTAPPQPVRIPQAVAAQAGSQPARAAGWEEAAKRWP
Ga0187784_112123401	3300018062	Tropical Peatland	QGEAPKPSLAASAPQPVRIPQAVNAQTANSPARGAGWEEAAKRWP
Ga0187772_102609502	3300018085	Tropical Peatland	LEKEVEALRVAAPLLSEEKEPIAEAPKPSLATAPAQQPIRIPAPIAAQGGAAPARAAGWEDAAKRWP
Ga0187769_105393831	3300018086	Tropical Peatland	KEVEALRIAAPLLSDEKEQSLEMPKPTIAATTVQQPIRIPTPVAAQAVNAPARAVGWEDAAKRWP
Ga0187770_101323061	3300018090	Tropical Peatland	PLLSDEKEQMTDAPKPSLTPVATAQQPIRIPAPIAAQSVNPPARAAGWEDAAKRWP
Ga0210399_101065901	3300020581	Soil	PLLSEEKEQITETPKPSLTATAPQQPVRIPPVVAATNPPARVAGWEEAAKRWP
Ga0210383_108490012	3300021407	Soil	VEALRVAAPLLSEEKEPLAETPKPSLTATAPQQPVRIPPVVAAQSAISPARVAGWEDAAKRWP
Ga0213853_108706392	3300021861	Watersheds	EKEVEALRVAAPLLSDDKEQLADVPKPTLTATTPQQPIRIPASVAAQAVNPPARAAGWEDAAKRWP
Ga0208039_10260532	3300025454	Peatland	VAPLLSDEKEPLVEVLKPSLTATAPPQPVRIPPVVAAQGATAPARVAGWEDAAKRWP
Ga0208819_10383141	3300025498	Peatland	EKEPLVEVPKPSLTATAPPQPVRIPPVVATQAAPAPARVAGWEDAAKRWP
Ga0208937_10931972	3300025506	Peatland	RIAAPLLSEEKEQLAEAPKPSLAASAPQPVRIPQAVNAQAANPPARGAGWEEAAKRWP
Ga0207646_107677121	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ISEAPKPSLTATAPQQPVRIPPVVASAPAPARAGWEEAAKRWP
Ga0209471_11412472	3300026318	Soil	EEKEQLSEAPKPSLTATAPQQPVRIPPVVAAANPPARVAGWEEAAKRWP
Ga0257178_10436442	3300026446	Soil	EAPKPTLTANGPQQPIRIPPVVAAQGATAPARVAGWEDAAKRWP
Ga0179587_110839481	3300026557	Vadose Zone Soil	AETPKPSLTATAPQQPVRIPPVVAATNPPARVAGWEEAAKRWP
Ga0209118_10559621	3300027674	Forest Soil	SEEKEQLAEAPKPSLTATAPQQPVRIPPVVAAQGAPAPARVAGWEEAAKRWP
Ga0209626_10500881	3300027684	Forest Soil	APLLSEEKEQIAEAPKPSLTATATQQPVRIPPVVAAAPAPARVAGWEEAAKRWP
Ga0209139_101482132	3300027795	Bog Forest Soil	CALLPLLSDEKEPIAEAPKPGLTAAVPPQPVRIPPVVAAQSAAAPARIAGWEDAAKRWP
Ga0209040_103261731	3300027824	Bog Forest Soil	EAPKPTLTTSPTQPVRIPPVVATQTATVPARVAGWEDAAKRWP
Ga0209517_105830022	3300027854	Peatlands Soil	AAAPQQPVRIPPVVAAQGTTPPARVAGWEDVAKRWP
Ga0209067_106621341	3300027898	Watersheds	VEALRVAAPLLSEDKEQIADVPKPTLTATTPQPPIRIPASVAAQAVNPPVRAAGWEDAAKRWP
Ga0209415_102086031	3300027905	Peatlands Soil	PKPSLAATPQQPVRIPPVVAAQGATAPRVAGWEDAAKRWP
Ga0302163_101041972	3300028868	Fen	EKEVEALRVAAPLLSEEKEPSLDSSKPTLTTTVTQQPIRIPAPVVAQAVGQPARAAGWEDAAKRWP
Ga0247275_10230891	3300029817	Soil	APKPSLAASAPQPVRIPQAVNAQAANPPARGAGWEEAAKRWP
Ga0311369_108777181	3300029910	Palsa	LRVAAPLLSEEKEQMAEAPKPTLAAAPQQQPVRIPPVVAAQGGTAPARVAGWEDAAKRWP
Ga0302274_104822392	3300030041	Bog	APLLSDEKETLAEAPKPSLTAAPPQPVRIPPVVAVQGSNPPARVAGWEDAAKRWP
Ga0311354_119443742	3300030618	Palsa	PSLAAPVPQQPVRIPPVVAAQAAAPPARVAGWEDASKRWP
Ga0310038_100944771	3300030707	Peatlands Soil	EALRIAAPLLSEEKEQMAEAPKPSLAASAPQPVRIPQAVNAQTANPPARGAGWEEAAKRW
Ga0170823_113688941	3300031128	Forest Soil	RVAAPLLSEEKEQVSEAPKPSLTATAQQPVRIPPVVAAAPAPARVAGWEEAAKRWP
Ga0307474_105229501	3300031718	Hardwood Forest Soil	PLLSEEKEQIAEAPKPTLAAAPQQQPVRIPPVVAAQGATAPARVAGWEDAAKRWP
Ga0302315_104836021	3300031837	Palsa	APLLSEEKETLAEAPKPTLTTAQPQPVRIPPVVAAQGGGAPVRAAGWEDAAKRWP
Ga0307479_108054202	3300031962	Hardwood Forest Soil	AAPLLSEEKEQISEAPKPSLTATAPQQPVRIPPVVASAPAPARAGWEEAAKRWP
Ga0371489_0029791_3948_4076	3300033755	Peat Soil	APKPSLTATAPQPVRIPPVVAAQGTTGPARVAGWEDAAKRWP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086480

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign