NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F086453

Metagenome Family F086453

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086453
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 48 residues
Representative Sequence MNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAY
Number of Associated Samples 55
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 21.82 %
% of genes from short scaffolds (< 2000 bps) 21.82 %
Associated GOLD sequencing projects 46
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.091 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(48.182 % of family members)
Environment Ontology (ENVO) Unclassified
(89.091 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.091 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66
1Ga0066395_109566922
2Ga0126374_100349645
3Ga0126373_104708663
4Ga0126373_107625621
5Ga0126373_107655221
6Ga0126373_128653861
7Ga0126381_1027021771
8Ga0182036_102726231
9Ga0182036_105856811
10Ga0182036_111456452
11Ga0182041_1000166725
12Ga0182041_113206081
13Ga0182041_114964491
14Ga0182041_116039711
15Ga0182033_110022961
16Ga0182035_115554341
17Ga0182032_100414521
18Ga0182032_101176301
19Ga0182032_113768782
20Ga0182032_114420021
21Ga0182032_119670911
22Ga0182034_100598823
23Ga0182034_110788721
24Ga0182037_105823611
25Ga0182037_111485742
26Ga0182037_112546951
27Ga0182037_117286291
28Ga0182039_104413611
29Ga0182039_110960181
30Ga0182039_114327932
31Ga0182039_116030051
32Ga0182038_102661771
33Ga0182038_105756062
34Ga0182038_108336501
35Ga0182038_108551721
36Ga0126371_108614143
37Ga0126371_110199431
38Ga0207858_10170102
39Ga0207815_10167081
40Ga0207777_100298512
41Ga0318516_103694671
42Ga0318541_106431561
43Ga0318541_107368581
44Ga0318538_101958861
45Ga0318538_105611891
46Ga0318528_105958751
47Ga0310915_101405354
48Ga0310915_106949341
49Ga0318542_104024582
50Ga0318542_107098961
51Ga0306917_103474611
52Ga0306917_103707612
53Ga0306917_112425911
54Ga0318500_103696832
55Ga0306918_101873544
56Ga0306918_115611002
57Ga0318521_102497783
58Ga0318508_10845031
59Ga0318547_109396091
60Ga0318552_103416221
61Ga0318576_105999931
62Ga0318567_108317181
63Ga0310917_100068471
64Ga0306919_100739181
65Ga0306925_100894095
66Ga0306925_104952032
67Ga0306925_113038361
68Ga0318522_103948152
69Ga0306923_105335692
70Ga0306923_117150601
71Ga0306921_102904793
72Ga0306921_108277211
73Ga0306921_127850492
74Ga0310912_100169931
75Ga0310912_102720492
76Ga0310916_100410991
77Ga0310916_104212723
78Ga0310916_104226152
79Ga0310916_112211602
80Ga0310913_101769851
81Ga0310913_105063063
82Ga0310913_106119042
83Ga0310913_107518893
84Ga0310913_108341191
85Ga0310913_108876271
86Ga0310910_1000115228
87Ga0310910_101247223
88Ga0310910_109124901
89Ga0310909_106053272
90Ga0310909_112010141
91Ga0306926_108231082
92Ga0306926_111657282
93Ga0306926_115567722
94Ga0306926_116253013
95Ga0306922_102160574
96Ga0306922_107011341
97Ga0306922_122782272
98Ga0318545_103844083
99Ga0318558_103638412
100Ga0318532_100787282
101Ga0318506_100326351
102Ga0318506_103351251
103Ga0318533_104954642
104Ga0318524_107662031
105Ga0306924_103360014
106Ga0306924_111080023
107Ga0318540_105631421
108Ga0306920_1006611031
109Ga0306920_1008515113
110Ga0318519_103879391
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 41.67%    β-sheet: 0.00%    Coil/Unstructured: 58.33%
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Variant

51015202530354045MNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
20.9%79.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Tropical Forest Soil
Soil
Soil
Tropical Forest Soil
7.3%40.9%48.2%3.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066395_1095669223300004633Tropical Forest SoilMTVGSATTPAFDPVFEFREGIKLLKNEYPQKALVRLKRAFE
Ga0126374_1003496453300009792Tropical Forest SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAFESDQH
Ga0126373_1047086633300010048Tropical Forest SoilMNVGDVTTQEVDPMADFREGIKLLRNEYPQKALVRFMRAFESDKHNTYYISFLGLA
Ga0126373_1076256213300010048Tropical Forest SoilMNVGSVITQEVDPMVDFREGIKLLRNEYPQKALVRFMRAFESDKHNTYYISFLGL
Ga0126373_1076552213300010048Tropical Forest SoilMNVGSVIDFRIGIKLLENEYPQRALVRFKRAFENDENNAYYISYL
Ga0126373_1286538613300010048Tropical Forest SoilMKVGSVATQEVDPVVEFREGIKLLKNEYPQKALVRFKRAFESDKHNAYYISFFGLAIARAQR
Ga0126381_10270217713300010376Tropical Forest SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVR
Ga0182036_1027262313300016270SoilMNVGTVAQQVDPMVDFREGIKLLKNDYPQKALVRFKRAFESDKHNAYYISFPGLA
Ga0182036_1058568113300016270SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYYISFLGLAIAR
Ga0182036_1114564523300016270SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFES
Ga0182041_10001667253300016294SoilMNVRSVTAQEVDFREGMKLLRNEYPQRALVRFKRAFESDE
Ga0182041_1132060813300016294SoilMVDFREGIKLLKNEYPQKALVRFKRAFENDENNAYYISYLGLAIA
Ga0182041_1149644913300016294SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHN
Ga0182041_1160397113300016294SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFESDENNAYYISFL
Ga0182033_1100229613300016319SoilMTVGSATTPAFDPVFEFREGIKLLKNEYPQKALVRLKRAFES
Ga0182035_1155543413300016341SoilMNVGSVATQEVDPMVEFREGIKLLKNEYPQKALVR
Ga0182032_1004145213300016357SoilMNVGDVTTQEVDPMVDFREGIKLLKNEYPQKAFVR
Ga0182032_1011763013300016357SoilMNVGFVATQDDPMVDFREGIKLLKNEYPQKALVRFKRAFESDENNAY
Ga0182032_1137687823300016357SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRLQRA
Ga0182032_1144200213300016357SoilMNVGSVTTQEVDPVVEFREGIKLLKNEYPQKALARFK
Ga0182032_1196709113300016357SoilMNVGTVAQQVDPMVDFREGIKLLKNEYPQKALVRLQRA
Ga0182034_1005988233300016371SoilMNVGSVATQEVDPMVEFREGIKLLKNEYPQEALVRFKRAFESDKHNAYYISFL
Ga0182034_1107887213300016371SoilMNVGSVTTQEVDFRIGIKLLENEYPQRALVRFKRAFE
Ga0182037_1058236113300016404SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAFES
Ga0182037_1114857423300016404SoilMNVGSVTTQEVDPMVDFREGIKLLRNEYPQKALVRFMRAFESDK
Ga0182037_1125469513300016404SoilMSFGSATTLVDDPMVEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYYI
Ga0182037_1172862913300016404SoilMNVGSVATEVDPMVEFREGIKLLKNEYPQKALVRFKRAFESEKHNAYYISFLG
Ga0182039_1044136113300016422SoilMNVGSVTTQEVDNMVDFREGIKLLKNEYPQKALVRFKRAFESDKYNAYYISFLGLAIARA
Ga0182039_1109601813300016422SoilMNVGSVATQEVDPMVEFREGIKLLKNEYPQKALVRFKRAFES
Ga0182039_1143279323300016422SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFE
Ga0182039_1160300513300016422SoilMSFGSATTLVDDPMVEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYYIS
Ga0182038_1026617713300016445SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFESDKHNAYYISFLG
Ga0182038_1057560623300016445SoilMNVGSISTQEVDPMVEFREGIKLLKNDYPQKALVRFKRAFESEKHNAYYISFFGLAIARA
Ga0182038_1083365013300016445SoilMNVGSVTTQEVDNMVDFREGIKLLKNEYPQKALVRFKRAFESDEN
Ga0182038_1085517213300016445SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNAY
Ga0126371_1086141433300021560Tropical Forest SoilMTVGSATTHAFDPVVEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYYISF
Ga0126371_1101994313300021560Tropical Forest SoilMNVGDVTTQEVDPMADFREGIKLLRNEYPQKALVRFMRAFESDKHNTYYISFLG
Ga0207858_101701023300026909Tropical Forest SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFES
Ga0207815_101670813300027014Tropical Forest SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNPYYISFLGLAIA
Ga0207777_1002985123300027330Tropical Forest SoilMNVRSVTTQEVDFREGIKLLNNEYPQRALVRFKRAFERDENNAYYISFL
Ga0318516_1036946713300031543SoilMNVGFVATQDDPMVDFREGIKLLKNEYPQKALVRFKRAFESDENNAYYM
Ga0318541_1064315613300031545SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYYISFLGLAIA
Ga0318541_1073685813300031545SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFESEENNAYY
Ga0318538_1019588613300031546SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAF
Ga0318538_1056118913300031546SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNAYYISFLGLAIA
Ga0318528_1059587513300031561SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFESDEN
Ga0310915_1014053543300031573SoilMNVRSVTAQEVDFREGMKLLRNEYPQRALVRFKRAFESDEN
Ga0310915_1069493413300031573SoilMNVGSISTQEVDPMVEFREGIKLLKNDYPQKALVRFKRAFESEK
Ga0318542_1040245823300031668SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAY
Ga0318542_1070989613300031668SoilMNVGSVTTQEVDNMVDFREGIKLLKNEYPQKALVRFKRAFESDKYNAYY
Ga0306917_1034746113300031719SoilMNVRSVTTQEVAFREGIKLLKNEYPQKALVRFKRAVEGDENNAYYLNPAYSQLSEWNNKA
Ga0306917_1037076123300031719SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNAYYIS
Ga0306917_1124259113300031719SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFESDENNAY
Ga0318500_1036968323300031724SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNPYF
Ga0306918_1018735443300031744SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYYISFL
Ga0306918_1156110023300031744SoilMNVGSVTTQEVDPMVDFREGIKLLRNEYPQKALVRFMRAFESDKYNAYYISFLGLA
Ga0318521_1024977833300031770SoilMNVRSVTAQEVDFREGMKLLRNEYPQRALVRFKRAFESDENNAYYISFLGLAI
Ga0318508_108450313300031780SoilMNVGSVTMQEVDFREGIKLLKNEYPQKALVRFKRAFESDENNAYY
Ga0318547_1093960913300031781SoilMNVGSISTQEVDPMVEFREGIKLLKNDYPQKALVRFKRAFESEKHNAYY
Ga0318552_1034162213300031782SoilMNVGDVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENN
Ga0318576_1059999313300031796SoilMNVGSVTKQEVDFRIGIKLLENEYPQRALVRFKRAFENDENNAYYISYLGLAIA
Ga0318567_1083171813300031821SoilMNVGFVATQDDPMVDFREGIKLLKNEYPQKALVRFKRAFESDENNAYYISFLGL
Ga0310917_1000684713300031833SoilMNVRSVTAQEVDFREGMKLLRNEYPQRALVRFKRAFESDENNAYYI
Ga0306919_1007391813300031879SoilMNVRSVTAQEVDFREGMKLLRNEYPQRALVRFKRAFESDENNAYYISFLG
Ga0306925_1008940953300031890SoilMNVGSVAQQVDPMVDFREGIKLLKNEYPQKALVRFKRAFESDKHNA
Ga0306925_1049520323300031890SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNAYYISFLGLAI
Ga0306925_1130383613300031890SoilMNVGSVTTQEVDFRIGIKLLENEYPQRALVRFKRAFENDENNAYY
Ga0318522_1039481523300031894SoilMNVGSVATQEVDPMVEFREGIKLLKNEYPQEALVRFKRAFESD
Ga0306923_1053356923300031910SoilMTVGSATTHAFDPVVEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYYISFLG
Ga0306923_1171506013300031910SoilMNVGSVITQEVDPMVDFREGIKLLRNEYPQKALVRFKRAFESDKYNAYYISFLGLAIA
Ga0306921_1029047933300031912SoilMVDFREGIKLLKNEYPQKALARFKRAFESDENNAYYMSFLGLAIARAQRK
Ga0306921_1082772113300031912SoilMNVGSVTKQEVDPMVDFREGIKLLKNEYPQGALVRFKRAFESDEN
Ga0306921_1278504923300031912SoilMNVRSVTTQEVDFREGMKLLRNEYPQRAVVRFKRAFES
Ga0310912_1001699313300031941SoilMNVGSVIDFRIGIKLLENEYPQRALVRFKRAFENDENNAYY
Ga0310912_1027204923300031941SoilMNVGFVATQDDPMVDFREGIKLLKNEYPQKALVRFKRAFESDNNN
Ga0310916_1004109913300031942SoilMNVGSVATKEVDFREGMKLLRNEYPQRALVRFKRAFES
Ga0310916_1042127233300031942SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYYISFLGLA
Ga0310916_1042261523300031942SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAF
Ga0310916_1122116023300031942SoilMTVGSATTHAFDPVVEFREGIKLLKNDYPQKALVRLKRAFESDQHNVYYISFLGLA
Ga0310913_1017698513300031945SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNAYYISFLGLAI
Ga0310913_1050630633300031945SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYCIS
Ga0310913_1061190423300031945SoilMNVGSVAQQVDPMVDFREGIKLLKNEYPQKALVRFKRAFESDKHNAYYISFLG
Ga0310913_1075188933300031945SoilMNVGSVATKEVDFREGMKLLRNEYPQRALVRFKRAFESDENN
Ga0310913_1083411913300031945SoilMTVGSATTHAFDPVVEFREGIKLLRNEYPQKALVRLKRAFESDQHNVY
Ga0310913_1088762713300031945SoilMNVGSVIDFRIGIKLLENEYPQRALVRFKRAFENDENNAYYIS
Ga0310910_10001152283300031946SoilMNVRSVTAQEVDFREGMKLLRNEYPQRALVRFKRAFESDENNAYYISFL
Ga0310910_1012472233300031946SoilMNVGSVATQEVDPMVEFREGIKLLKNEYPQEALVRFKRAFESDKHNAYYISFLGLATA
Ga0310910_1091249013300031946SoilMNVVPVATQEVDPMVEFREGIKLLKNEYPQKALVRFKRAFESDKHNAYYISFLGLAIARAQRK
Ga0310909_1060532723300031947SoilMNVGSVATQEVDPMVEFREGIKLLKNEYPQEALVRFKRAFESDKHNAYYI
Ga0310909_1120101413300031947SoilMNVGSVAQQVDPMVDFREGIKLLKNEYPQKALVRFK
Ga0306926_1082310823300031954SoilMNVRSVTTQEVAFREGIKLLKNEYPQKALVRFKRAVEGDENNAYYISFLGL
Ga0306926_1116572823300031954SoilMNVGSVIDFRIGIKLLENEYPQRALVRFKRAFENDEN
Ga0306926_1155677223300031954SoilMNVGSVITQEVDPMVDFREGIKLLRNEYPQKALVRFKRAFESDKYNAYYISFLG
Ga0306926_1162530133300031954SoilMNVGSVATKEVDFREGMKLLRNEYPQRALVRFKRAFESDEN
Ga0306922_1021605743300032001SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYYISFLGLAI
Ga0306922_1070113413300032001SoilMTVGSATTHAFDPVVEFREGIKLLRNEYPQKALVRLKRAFESDQHNVYYISFLGL
Ga0306922_1227822723300032001SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFER
Ga0318545_1038440833300032042SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAFESD
Ga0318558_1036384123300032044SoilMNAGSVATQEVDPMVDFREGIKLLKNKYPQKALVRFMRAFESDKHNAYYISFLGLAIARAQRKW
Ga0318532_1007872823300032051SoilMNVRSVTTQEVAFREGIKLLKNEYPQKALVRFKRAVEGDENNAYY
Ga0318506_1003263513300032052SoilMNVGSVTTQEVDNMVDFREGIKLLKNEYPQKALVRFK
Ga0318506_1033512513300032052SoilMNAGSVATQEVDPMVDFREGIKLLKNEYPQKALVRFKRAFERDKHNPYFISFLGLTIARA
Ga0318533_1049546423300032059SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYY
Ga0318524_1076620313300032067SoilMNVGSVTTQEVDNMVDFREGIKLLKNEYPQKALVRFKRAFESDKYNAYYISFLGLA
Ga0306924_1033600143300032076SoilMNVGSVATKEVDFREGMKLLRNEYPQRALVRFKRAFESDENNAYYISF
Ga0306924_1110800233300032076SoilMNVGSVTTQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYYISFLGLAIARA
Ga0318540_1056314213300032094SoilMNVRSVTTQEVDFREGMKLLRNEYPQRAVVRFKRAFESDENNAYYI
Ga0306920_10066110313300032261SoilMNVGSVATQEVDPMVDFREGIKLLKNEYPQRALVRFKRAFESDENNAYYISFLGLAIARA
Ga0306920_10085151133300032261SoilMTVGSATTHAFDPVVEFREGIKLLRNEYPQKALVRLKRAFESDQHNVYYISF
Ga0318519_1038793913300033290SoilMTVGSATTHAFDPVFEFREGIKLLKNEYPQKALVRLKRAFESDQHNVYYISFLG


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