Metagenome / Metatranscriptome Family F086427

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086427
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	MASKLVSLQSNSPRHLSSVFNDYQGEICDLLLAINVVRLALEAEEDN
Number of Associated Samples	66
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	16.36 %
% of genes from short scaffolds (< 2000 bps)	14.55 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (95.455 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.091 % of family members)
Environment Ontology (ENVO)	Unclassified (72.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.091 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0066395_104603763 2Ga0066388_1045651632 3Ga0066388_1084343171 4Ga0066903_1014604451 5Ga0066903_1027050532 6Ga0066903_1064370671 7Ga0066903_1066113311 8Ga0066903_1066313282 9Ga0066903_1079479322 10Ga0126373_128238641 11Ga0126373_133049072 12Ga0126376_107490301 13Ga0126378_113622411 14Ga0126378_118401482 15Ga0126377_131480892 16Ga0126379_105445073 17Ga0126379_112600862 18Ga0126379_115366531 19Ga0126379_116284891 20Ga0126381_1023535581 21Ga0126381_1023867771 22Ga0126383_116649912 23Ga0126369_119778942 24Ga0182036_106792341 25Ga0182041_102250192 26Ga0182041_106021851 27Ga0182041_108188212 28Ga0182041_121168312 29Ga0182033_103273052 30Ga0182033_110985612 31Ga0182033_117083151 32Ga0182035_105370312 33Ga0182035_108829813 34Ga0182035_120449301 35Ga0182032_103710692 36Ga0182034_112004381 37Ga0182034_113101911 38Ga0182040_100817721 39Ga0182040_113698921 40Ga0182040_118931801 41Ga0182037_109792461 42Ga0182037_111014491 43Ga0182038_107628331 44Ga0126371_100737941 45Ga0126371_138749811 46Ga0242662_102426331 47Ga0207826_10277401 48Ga0318516_102636753 49Ga0318541_103236791 50Ga0318541_105673401 51Ga0318515_102277571 52Ga0310915_101962104 53Ga0310915_103994862 54Ga0310915_107564031 55Ga0310915_112598201 56Ga0306917_110921522 57Ga0306917_113236112 58Ga0318500_100234981 59Ga0306918_112088591 60Ga0318502_105587923 61Ga0307477_101260881 62Ga0307477_102379793 63Ga0307475_106475763 64Ga0318535_102569761 65Ga0318509_106112651 66Ga0318546_107524441 67Ga0318543_105456911 68Ga0318547_110084381 69Ga0318550_103158203 70Ga0318523_103137032 71Ga0310917_110393912 72Ga0310917_110570062 73Ga0318527_101753751 74Ga0318544_101860461 75Ga0306925_104064411 76Ga0306925_114238502 77Ga0318551_108871611 78Ga0318520_104186012 79Ga0306921_101643144 80Ga0306921_125481571 81Ga0310912_105802051 82Ga0310912_109324511 83Ga0310916_110445832 84Ga0310916_113612662 85Ga0310913_100934571 86Ga0310909_100671871 87Ga0310909_108734194 88Ga0306926_102904564 89Ga0306926_113020633 90Ga0318531_104144291 91Ga0306922_111797833 92Ga0310911_102229771 93Ga0318559_101594753 94Ga0318545_103627691 95Ga0318532_101235343 96Ga0318533_110676301 97Ga0318505_103428432 98Ga0318513_103169721 99Ga0318514_101419581 100Ga0306924_101403711 101Ga0306924_106383833 102Ga0306924_111921241 103Ga0306924_113964421 104Ga0306924_115470031 105Ga0318525_106479191 106Ga0306920_1003954422 107Ga0306920_1013689091 108Ga0306920_1016739402 109Ga0318519_101628024 110Ga0318519_103131701
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0066395_104603763 2Ga0066388_1045651632 3Ga0066903_1027050532 4Ga0066903_1064370671 5Ga0126379_116284891 6Ga0126381_1023867771 7Ga0182041_102250192 8Ga0182037_111014491 9Ga0307477_101260881 10Ga0318535_102569761
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 1Ga0066395_104603763 2Ga0066388_1045651632 3Ga0066903_1027050532 4Ga0066903_1064370671 5Ga0126379_116284891 6Ga0126381_1023867771 7Ga0182041_102250192 8Ga0182037_111014491 9Ga0307477_101260881 10Ga0318535_102569761
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.83% β-sheet: 0.00% Coil/Unstructured: 36.17%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08734	GYD	1.82
PF00856	SET	1.82
PF13356	Arm-DNA-bind_3	0.91
PF00027	cNMP_binding	0.91
PF02798	GST_N	0.91
PF13376	OmdA	0.91
PF00589	Phage_integrase	0.91
PF11272	DUF3072	0.91
PF07859	Abhydrolase_3	0.91
PF03144	GTP_EFTU_D2	0.91

Showing 1 to 10 of 10 entries

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COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.82
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	4.55 %
Unclassified	root	N/A	95.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	4.55 %
Unclassified	root	N/A	95.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.55 %
Unclassified	root	N/A	95.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.55 %
Unclassified	root	N/A	95.45 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.55 %
Unclassified	root	N/A	95.45 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_104565163	Not Available	705	Open in IMG/M
3300010359\|Ga0126376_10749030	Not Available	947	Open in IMG/M
3300010366\|Ga0126379_11260086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300010376\|Ga0126381_102386777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300010398\|Ga0126383_11664991	Not Available	727	Open in IMG/M
3300021560\|Ga0126371_10073794	Not Available	3328	Open in IMG/M
3300027680\|Ga0207826_1027740	Not Available	1570	Open in IMG/M
3300031572\|Ga0318515_10227757	Not Available	1000	Open in IMG/M
3300031573\|Ga0310915_10196210	Not Available	1410	Open in IMG/M
3300031573\|Ga0310915_10399486	Not Available	976	Open in IMG/M

Showing 1 to 10 of 18 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	76.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.55%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.09%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M

Showing 1 to 10 of 66 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_104603763	3300004633	Tropical Forest Soil	MASKLVSLQSNSPRHLSSVFNDYQGEICDLLLAINVVRLALEAEEDN
Ga0066388_1045651632	3300005332	Tropical Forest Soil	MASKVVSIQSNSPLHLSSVFSDYQGEICDLLLAINLVRLALEAEEDNRAQSGTARIAL
Ga0066388_1084343171	3300005332	Tropical Forest Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIALEHLEDMAT
Ga0066903_1014604451	3300005764	Tropical Forest Soil	MASKVVSLQSKSPRHLSSVFGDYDGEICDLLLAINVVRLALEAEEDNRA*
Ga0066903_1027050532	3300005764	Tropical Forest Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIALEHLEEM
Ga0066903_1064370671	3300005764	Tropical Forest Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLA
Ga0066903_1066113311	3300005764	Tropical Forest Soil	MMASKLVSLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLA
Ga0066903_1066313282	3300005764	Tropical Forest Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAINVVR
Ga0066903_1079479322	3300005764	Tropical Forest Soil	MSKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRL
Ga0126373_128238641	3300010048	Tropical Forest Soil	MAAKVVSLQSNLPHHLSSIFSDYQGEISDLLLAINVVRLALEAEEDNRAQSGTARIALEHLE
Ga0126373_133049072	3300010048	Tropical Forest Soil	MAAKVVSFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDN
Ga0126376_107490301	3300010359	Tropical Forest Soil	MAAKVVSLQSNLPHHLSSIFSDYQGEISDLLLAINVIRLALEAEEDNRAQSGTARIALEHLEDM
Ga0126378_113622411	3300010361	Tropical Forest Soil	MASKLVSLQSNSPRHLSSVFNDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARI
Ga0126378_118401482	3300010361	Tropical Forest Soil	MASKLVSLQSNSPHHLSSVFGDYQGEICDLLLAINVVRLALEA
Ga0126377_131480892	3300010362	Tropical Forest Soil	MASKVVSLQSNSPRELSSVFKDYQGEICDLLLAINVVRLALEAEEDNRAQ
Ga0126379_105445073	3300010366	Tropical Forest Soil	MASKVVSLRSNSPRHLSSIFDDYQGEICDLLLAINVVRLALEAEED
Ga0126379_112600862	3300010366	Tropical Forest Soil	MASKVVSLQSNSPRELSSVFKDYQGEICDLLLAINVVRLALEAEE
Ga0126379_115366531	3300010366	Tropical Forest Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAINVVRLALEAEEDNRAQS
Ga0126379_116284891	3300010366	Tropical Forest Soil	MAAKVVSFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRVALEAEEDDSAPSGA
Ga0126381_1023535581	3300010376	Tropical Forest Soil	MASKLVSLQSNSPRHLSSIFGDYQGEICDLLLAINVVRLALEAEEDNRAQSGTA
Ga0126381_1023867771	3300010376	Tropical Forest Soil	MASKVVNLQSNSPRHLSSVFGDYQGEICDFLLAINV
Ga0126383_116649912	3300010398	Tropical Forest Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLAL
Ga0126369_119778942	3300012971	Tropical Forest Soil	MAAKLASLQSDLPRHLSSVFNDYQDEIRDLLLAINVVRLALEA
Ga0182036_106792341	3300016270	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINV
Ga0182041_102250192	3300016294	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSGTKWREDYITA
Ga0182041_106021851	3300016294	Soil	MASKLVSLQSNSPRHLSSVFNDYQGEICDLLLAINVVRLALEAEEDNRAQSG
Ga0182041_108188212	3300016294	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIALE
Ga0182041_121168312	3300016294	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAE
Ga0182033_103273052	3300016319	Soil	MASKLVSLQSNSPRHLSSVFGDYQGEICDLLLAINVV
Ga0182033_110985612	3300016319	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRA
Ga0182033_117083151	3300016319	Soil	MSKVITIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNG
Ga0182035_105370312	3300016341	Soil	MAAKLVSLQSDLSRHLSSVFNDYQDEIRDLLLAINVVRLALEAEED
Ga0182035_108829813	3300016341	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDN
Ga0182035_120449301	3300016341	Soil	MAAKVVSFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIAL
Ga0182032_103710692	3300016357	Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLRAINVVRLALEAEEDNRAQSGTARIALDHLEDMAT
Ga0182034_112004381	3300016371	Soil	MAAKLVSLQSDLSRHLSSVFNDYQDEIRDLLLAINVVRLALEA
Ga0182034_113101911	3300016371	Soil	MAAKLASLQSDLPRHLSSVFNDYQGEIRDLLLAINVVRLALEAEEDNRAQSGTARI
Ga0182040_100817721	3300016387	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIAL
Ga0182040_113698921	3300016387	Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIALD
Ga0182040_118931801	3300016387	Soil	MAAKVVNFQGGSPRYLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSVPSGTARIALDHLEEMAG
Ga0182037_109792461	3300016404	Soil	MAAKLASLQSDLPRHLSSVFNDYQGEIRDLLLAINVVRLA
Ga0182037_111014491	3300016404	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLA
Ga0182038_107628331	3300016445	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIAL
Ga0126371_100737941	3300021560	Tropical Forest Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPS
Ga0126371_138749811	3300021560	Tropical Forest Soil	MAAKVVSFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSA
Ga0242662_102426331	3300022533	Soil	MASKVVSLQSNSSRHLSSVFSDYQGEICDLPLAINVVRLALEAEEDNRAQSG
Ga0207826_10277401	3300027680	Tropical Forest Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAIN
Ga0318516_102636753	3300031543	Soil	MASKVVNLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIALEHLED
Ga0318541_103236791	3300031545	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDN
Ga0318541_105673401	3300031545	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQSG
Ga0318515_102277571	3300031572	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLAL
Ga0310915_101962104	3300031573	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSGTKWREDY
Ga0310915_103994862	3300031573	Soil	MAAKVVSLQSNFPRHLSSIFSDYQGEISDLLLAINVV
Ga0310915_107564031	3300031573	Soil	MAAKLVSLQSNSPRHLSSVFNDYQDEIRDLLLAINVVRL
Ga0310915_112598201	3300031573	Soil	TMAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPREGHE
Ga0306917_110921522	3300031719	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEED
Ga0306917_113236112	3300031719	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEE
Ga0318500_100234981	3300031724	Soil	MASKVVNLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLALEAE
Ga0306918_112088591	3300031744	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLA
Ga0318502_105587923	3300031747	Soil	MASKLVSLQSNSPRHLSSVFNDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIA
Ga0307477_101260881	3300031753	Hardwood Forest Soil	MAAKVVSFQGGSPRFLLSVFNDYQDEIGGLVLAIN
Ga0307477_102379793	3300031753	Hardwood Forest Soil	MMAAKVVSFQDGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIA
Ga0307475_106475763	3300031754	Hardwood Forest Soil	MAAKVVSFQGGSPRFLLSVFNDYQDEIGDLVLAINVVRLALEAE
Ga0318535_102569761	3300031764	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLALEAEEDSRAQRGTARVALEHLE
Ga0318509_106112651	3300031768	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQNGTARIAL
Ga0318546_107524441	3300031771	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAE
Ga0318543_105456911	3300031777	Soil	MAAKVVNFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSVPSGTARI
Ga0318547_110084381	3300031781	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLALEAEEDSRAQRGTARIALEH
Ga0318550_103158203	3300031797	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQNGTARIALDHLEDM
Ga0318523_103137032	3300031798	Soil	MASKVVNLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRA
Ga0310917_110393912	3300031833	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAIN
Ga0310917_110570062	3300031833	Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAINVVRLALEAEEDNRAQSGTA
Ga0318527_101753751	3300031859	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSG
Ga0318544_101860461	3300031880	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSG
Ga0306925_104064411	3300031890	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQNG
Ga0306925_114238502	3300031890	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQ
Ga0318551_108871611	3300031896	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLALE
Ga0318520_104186012	3300031897	Soil	MAAKVVNFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNS
Ga0306921_101643144	3300031912	Soil	MASKLVSLQSNSPRHLSSVFNDYQGEICDLLLAINVVRLALE
Ga0306921_125481571	3300031912	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLAL
Ga0310912_105802051	3300031941	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQSGT
Ga0310912_109324511	3300031941	Soil	MAAKVVNFQGGSPRYLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSVPSGTARIA
Ga0310916_110445832	3300031942	Soil	MASKLVSLQSNSPRHLSSVFGDYQGEICDLLLAINLVRLALEAEE
Ga0310916_113612662	3300031942	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLALEAEEDSRAQRGTARVALEHLEDM
Ga0310913_100934571	3300031945	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLALE
Ga0310909_100671871	3300031947	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVR
Ga0310909_108734194	3300031947	Soil	MASKLVSLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLA
Ga0306926_102904564	3300031954	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEED
Ga0306926_113020633	3300031954	Soil	MAAKVVSLQSNFPRHLSSIFSDYQGEISDLLLGINV
Ga0318531_104144291	3300031981	Soil	MASKLVSLQSNSPRHLSSVFGDYQGEICDFLLAINVVRLALEAEEDNCRAPA
Ga0306922_111797833	3300032001	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLA
Ga0310911_102229771	3300032035	Soil	MASKVVSLQSKSPRHLSSVFGDYQGEICDLLLAINVVRLALEAE
Ga0318559_101594753	3300032039	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIALEHLEEMA
Ga0318545_103627691	3300032042	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAVNVVRLALEAEEDNGAPSGTARIALEHLE
Ga0318532_101235343	3300032051	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNS
Ga0318533_110676301	3300032059	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSGTA
Ga0318505_103428432	3300032060	Soil	MAAKVISIQDNSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEE
Ga0318513_103169721	3300032065	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLALEAEEDSRAQRGTARVAL
Ga0318514_101419581	3300032066	Soil	MASKVVNLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIALEHLE
Ga0306924_101403711	3300032076	Soil	MAAKVVSLQSNFPRHLSSIFSDYQGEISDLLLGINVVRLA
Ga0306924_106383833	3300032076	Soil	MAAKVVNFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSVPSGTARIALDHLEEMAG
Ga0306924_111921241	3300032076	Soil	MASKLVSLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEED
Ga0306924_113964421	3300032076	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLALE
Ga0306924_115470031	3300032076	Soil	MAAKLVSLQSDLTRHLSSVFNDYQDEIRDLLLAINVVRLALEAEED
Ga0318525_106479191	3300032089	Soil	MAAKVVNFQGGSPRFLLSVFNDYQGEIGDLVLAINVVRLALEAEEDNSAPSGTARIALEHLEE
Ga0306920_1003954422	3300032261	Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIALDRAQDKMARGLR
Ga0306920_1013689091	3300032261	Soil	MASKLVSLQSNSPRHLSSVFDDYQGEICDLLLAINVV
Ga0306920_1016739402	3300032261	Soil	MAAKLVSLQSNLPRHLSSVFSDYQGEICDLLLAINVVRLAL
Ga0318519_101628024	3300033290	Soil	MASKVVNLQSNSPRHLSSVFGDYQGEICDLLLAINVVRLALEAEEDNRAQSGTARIALEHLEDM
Ga0318519_103131701	3300033290	Soil	MAAKLVSLQRNLPRHLSSVFSDYQGEICDLLLAINVVRLALEAEEDNRAQSGTKWREDYI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086427

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences