Metagenome / Metatranscriptome Family F086344

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086344
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	76 residues
Representative Sequence	VFSLSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Number of Associated Samples	70
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.91 %
% of genes near scaffold ends (potentially truncated)	22.52 %
% of genes from short scaffolds (< 2000 bps)	66.67 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.874 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (31.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.171 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.10% β-sheet: 0.00% Coil/Unstructured: 41.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
f.13.1.0: automated matches	d5c1ma_	5c1m	0.73744
a.2.11.0: automated matches	d3ak2a1	3ak2	0.70851
f.13.1.0: automated matches	d7l1vr_	7l1v	0.70182
a.2.7.3: Valyl-tRNA synthetase (ValRS) C-terminal domain	d1ivsa1	1ivs	0.7004
e.11.1.1: Type II DNA topoisomerase C-terminal domain-like	d3ku8a_	3ku8	0.69752

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF03441	FAD_binding_7	18.02
PF00809	Pterin_bind	15.32
PF07883	Cupin_2	13.51
PF08570	DUF1761	4.50
PF01694	Rhomboid	3.60
PF02113	Peptidase_S13	3.60
PF00578	AhpC-TSA	1.80
PF00749	tRNA-synt_1c	1.80
PF00875	DNA_photolyase	1.80
PF02637	GatB_Yqey	0.90
PF13365	Trypsin_2	0.90
PF02934	GatB_N	0.90
PF01850	PIN	0.90
PF02978	SRP_SPB	0.90
PF04389	Peptidase_M28	0.90
PF00378	ECH_1	0.90
PF05163	DinB	0.90
PF13620	CarboxypepD_reg	0.90
PF01189	Methyltr_RsmB-F	0.90
PF13474	SnoaL_3	0.90
PF04536	TPM_phosphatase	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0415	Deoxyribodipyrimidine photolyase	Replication, recombination and repair [L]	19.82
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	3.60
COG2027	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.60
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.80
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	1.80
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	1.80
COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	Translation, ribosomal structure and biogenesis [J]	0.90
COG0541	Signal recognition particle GTPase	Intracellular trafficking, secretion, and vesicular transport [U]	0.90
COG1610	Uncharacterized conserved protein YqeY, may have tRNA amino acid amidase activity	General function prediction only [R]	0.90
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.87 %
Unclassified	root	N/A	26.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.87 %
Unclassified	root	N/A	26.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.87 %
Unclassified	root	N/A	26.13 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.83 %
Unclassified	root	N/A	26.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.80 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.52 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.80 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	22.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	9.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Cyanothecaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Cyanothece	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
unclassified Cyanothece	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.13 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.80 %
Cyanothece sp. SIO1E1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece → Cyanothece sp. SIO1E1	0.90 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001385\|JGI20193J14888_1003575	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3833	Open in IMG/M
3300003218\|JGI26339J46600_10025523	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300003218\|JGI26339J46600_10056534	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300003218\|JGI26339J46600_10071405	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300003218\|JGI26339J46600_10138528	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300003219\|JGI26341J46601_10039736	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300003219\|JGI26341J46601_10079408	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300003219\|JGI26341J46601_10112943	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300003368\|JGI26340J50214_10113454	Not Available	690	Open in IMG/M
3300003369\|JGI24140J50213_10038349	Not Available	1742	Open in IMG/M
3300004080\|Ga0062385_10287325	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300004152\|Ga0062386_100097824	All Organisms → cellular organisms → Bacteria	2252	Open in IMG/M
3300004152\|Ga0062386_100240174	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300004152\|Ga0062386_100266158	Not Available	1361	Open in IMG/M
3300004152\|Ga0062386_100696945	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300004152\|Ga0062386_100804130	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300004152\|Ga0062386_100817916	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300004152\|Ga0062386_101128485	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300004152\|Ga0062386_101326533	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300004152\|Ga0062386_101455640	Not Available	571	Open in IMG/M
3300005921\|Ga0070766_11283918	Not Available	507	Open in IMG/M
3300006052\|Ga0075029_101079907	Not Available	557	Open in IMG/M
3300006055\|Ga0097691_1012420	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4095	Open in IMG/M
3300006055\|Ga0097691_1146996	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300006642\|Ga0075521_10106629	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300006642\|Ga0075521_10131806	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300009029\|Ga0066793_10540614	Not Available	665	Open in IMG/M
3300009523\|Ga0116221_1370583	Not Available	622	Open in IMG/M
3300009616\|Ga0116111_1000287	All Organisms → cellular organisms → Bacteria	43205	Open in IMG/M
3300009637\|Ga0116118_1025901	All Organisms → cellular organisms → Bacteria → Acidobacteria	2174	Open in IMG/M
3300010339\|Ga0074046_10000330	All Organisms → cellular organisms → Bacteria → Acidobacteria	42157	Open in IMG/M
3300010339\|Ga0074046_10031704	Not Available	3602	Open in IMG/M
3300010339\|Ga0074046_10153980	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300010341\|Ga0074045_10017980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5624	Open in IMG/M
3300010341\|Ga0074045_10064924	All Organisms → cellular organisms → Bacteria	2597	Open in IMG/M
3300010341\|Ga0074045_10086506	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2186	Open in IMG/M
3300010341\|Ga0074045_10157016	Not Available	1542	Open in IMG/M
3300010341\|Ga0074045_10192431	Not Available	1370	Open in IMG/M
3300010341\|Ga0074045_10293921	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300010341\|Ga0074045_10497802	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300010341\|Ga0074045_10542296	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300012210\|Ga0137378_11741581	Not Available	528	Open in IMG/M
3300014158\|Ga0181521_10201810	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300014159\|Ga0181530_10044300	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2975	Open in IMG/M
3300014165\|Ga0181523_10005000	All Organisms → cellular organisms → Bacteria → Acidobacteria	11167	Open in IMG/M
3300014495\|Ga0182015_10071880	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300016270\|Ga0182036_10906422	Not Available	723	Open in IMG/M
3300016294\|Ga0182041_10275718	Not Available	1382	Open in IMG/M
3300016371\|Ga0182034_10649128	Not Available	894	Open in IMG/M
3300016404\|Ga0182037_10778777	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300016702\|Ga0181511_1456243	Not Available	1471	Open in IMG/M
3300017934\|Ga0187803_10032732	All Organisms → cellular organisms → Bacteria	2065	Open in IMG/M
3300017935\|Ga0187848_10065010	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300017970\|Ga0187783_10035083	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3714	Open in IMG/M
3300017972\|Ga0187781_10155668	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300017973\|Ga0187780_10967007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	620	Open in IMG/M
3300018003\|Ga0187876_1000338	All Organisms → cellular organisms → Bacteria → Acidobacteria	50191	Open in IMG/M
3300018019\|Ga0187874_10184960	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	870	Open in IMG/M
3300018060\|Ga0187765_11270521	Not Available	520	Open in IMG/M
3300018062\|Ga0187784_11071808	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300018086\|Ga0187769_10067947	All Organisms → cellular organisms → Bacteria	2508	Open in IMG/M
3300019787\|Ga0182031_1219023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2219	Open in IMG/M
3300023090\|Ga0224558_1165562	Not Available	696	Open in IMG/M
3300025527\|Ga0208714_1017841	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300025579\|Ga0207927_1003160	All Organisms → cellular organisms → Bacteria → Acidobacteria	6540	Open in IMG/M
3300025619\|Ga0207926_1057171	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1054	Open in IMG/M
3300025650\|Ga0209385_1004648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5879	Open in IMG/M
3300025650\|Ga0209385_1051720	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300025878\|Ga0209584_10006670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3789	Open in IMG/M
3300027394\|Ga0209904_1004160	Not Available	1077	Open in IMG/M
3300027698\|Ga0209446_1009958	All Organisms → cellular organisms → Bacteria	2333	Open in IMG/M
3300027698\|Ga0209446_1108938	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300027698\|Ga0209446_1164197	Not Available	573	Open in IMG/M
3300027812\|Ga0209656_10000594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	23871	Open in IMG/M
3300027812\|Ga0209656_10016551	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4566	Open in IMG/M
3300027812\|Ga0209656_10035263	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2929	Open in IMG/M
3300027812\|Ga0209656_10051372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2326	Open in IMG/M
3300027812\|Ga0209656_10055776	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2208	Open in IMG/M
3300027812\|Ga0209656_10090637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece → Cyanothece sp. SIO1E1	1624	Open in IMG/M
3300027824\|Ga0209040_10051108	All Organisms → cellular organisms → Bacteria	2490	Open in IMG/M
3300027824\|Ga0209040_10279268	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	823	Open in IMG/M
3300027824\|Ga0209040_10476762	Not Available	560	Open in IMG/M
3300027825\|Ga0209039_10051816	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	1865	Open in IMG/M
3300027825\|Ga0209039_10169603	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300027825\|Ga0209039_10411169	Not Available	516	Open in IMG/M
3300030494\|Ga0310037_10370749	Not Available	598	Open in IMG/M
3300031238\|Ga0265332_10294217	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300031833\|Ga0310917_10136939	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1606	Open in IMG/M
3300031890\|Ga0306925_10106023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2994	Open in IMG/M
3300031910\|Ga0306923_10322357	Not Available	1764	Open in IMG/M
3300031947\|Ga0310909_10315955	Not Available	1310	Open in IMG/M
3300032001\|Ga0306922_10004953	All Organisms → cellular organisms → Bacteria	12670	Open in IMG/M
3300032059\|Ga0318533_10259423	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300032160\|Ga0311301_10387828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2150	Open in IMG/M
3300032770\|Ga0335085_10008780	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	15358	Open in IMG/M
3300032770\|Ga0335085_10236106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2209	Open in IMG/M
3300032770\|Ga0335085_10412686	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300032782\|Ga0335082_10010803	All Organisms → cellular organisms → Bacteria	9911	Open in IMG/M
3300032782\|Ga0335082_10072465	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3482	Open in IMG/M
3300032782\|Ga0335082_10777525	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300032783\|Ga0335079_10346314	Not Available	1613	Open in IMG/M
3300032805\|Ga0335078_11714048	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300032828\|Ga0335080_10075420	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3741	Open in IMG/M
3300032829\|Ga0335070_11737543	Not Available	565	Open in IMG/M
3300032892\|Ga0335081_11120631	Not Available	905	Open in IMG/M
3300032893\|Ga0335069_10608108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1253	Open in IMG/M
3300032954\|Ga0335083_10714809	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300032954\|Ga0335083_11026964	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300033004\|Ga0335084_10581732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1147	Open in IMG/M
3300033158\|Ga0335077_11069776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.46%
Aquatic	Environmental → Aquatic	39.64%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.56%
Freshwater	Environmental → Aquatic → Freshwater	38.74%
Sediment	Environmental → Aquatic → Sediment	0.90%
Peat	Environmental → Terrestrial → Peat	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	38.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.90%
Loam	Environmental → Terrestrial → Soil → Loam	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	36.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	29.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.01%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	29.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	14.41%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	10.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	9.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.41%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.90%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.90%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.90%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300027394	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20193J14888_10035754	3300001385	Arctic Peat Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPHERRLYIYVGLAGFVVWVSAFLYSLKIAP*
JGI26339J46600_100255233	3300003218	Bog Forest Soil	VFSLSFVLIMAGLAFGGATTLIGFGGLLGTSFHRALGTPLPLPTLHSPFERRLYVCVGIAGFVVWVSSFLYSLKIAP*
JGI26339J46600_100565341	3300003218	Bog Forest Soil	VFSLTFVLVIAGLAFGGAMALVGFGGLLGTSFHRALGTPLPLPTIHSPFERRLYVYVGVAGFVVWACTFWYSLKIAP*
JGI26339J46600_100714052	3300003218	Bog Forest Soil	MGCAVFSLSFVLIMAGLAFGGATTLIGFGGLLGTSFHRALGAPLPLPTLHSPFERRLYVYVGIAGFLVWVSAFLYSLKIAP*
JGI26339J46600_101385282	3300003218	Bog Forest Soil	MFSLSFVLIMAGLAFGGATTLIGFGGLLGTSFHRALGAPLPLPTLHSPLERRLYVYVGIAGLVVWVSAFLYSLKIAP*
JGI26341J46601_100397362	3300003219	Bog Forest Soil	VGCAVFSLTFVLVIAGLAFGGGMALVGFGGLLGTSFHRALGTPLPLPTIHNTFERRLYVGVGIAGFVVWAATFLYSLKIAP*
JGI26341J46601_100794081	3300003219	Bog Forest Soil	VFSLSFVLIMAGLAFGGATAVIGFGGLLGTSFHRALGTPLPLPTIHNRFERWLYVCVGLAGLVVWVSALLYSLKIAP*
JGI26341J46601_101129432	3300003219	Bog Forest Soil	MAGLGFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFEQWLYVCVGLAGLVVWVSTFLYSLKIAP*
JGI26340J50214_101134542	3300003368	Bog Forest Soil	VGWAVFSLTFVLVIAGLAFGGAMALIGFGGLLGTSFHRALGTPLPLPTIHSSFERWLYVCVGTAGLVVWGSVFLYSLKIAP*
JGI24140J50213_100383492	3300003369	Arctic Peat Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKXAP*
Ga0062385_102873251	3300004080	Bog Forest Soil	VFSLTFVLVIAGLAFGGSMALVGFGGLLGTSFHRALGAPLPLPTVHNAFEKRLFVGVGIVGIVVWACAFLCSLKIAP*
Ga0062386_1000978242	3300004152	Bog Forest Soil	MFSLPYVVIMAGLSFGGAMTVIGFGGLLGAWFHRELGTPLPLPTLRGPVERRLYTCVGLAGFVVWGSAFLWSLKLLP*
Ga0062386_1002401742	3300004152	Bog Forest Soil	VFSLTFVLVIAGLAFGGAMALIGFGGLLGTSFHRAMGTPLPLPTIHSPFERRLYVYVGIAGFVVWACTFLYSLRVAP*
Ga0062386_1002661581	3300004152	Bog Forest Soil	VGCAVFSLTFVLVIAGLAFGGAMAVIGFGGLLGTSFHRALGTPLPLPTIHSPFERRLYAYVGVAGFVVWACTFWYSLKVAP*
Ga0062386_1006969452	3300004152	Bog Forest Soil	MFSLPFVVIMAGLSFGGAMTVIGFGGLLGAWFHRELGTPLPLPTLRGPLEKKLYTCVGVAGFVVWGSAFLWSLKLLP*
Ga0062386_1008041301	3300004152	Bog Forest Soil	VFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRALGTPLPLPTLHSSFERWLYVCVGSAGLVVWGSVFLYSLKIAP*
Ga0062386_1008179162	3300004152	Bog Forest Soil	MAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFERWLYVCVGFAGLAVWVSTFLYSLKIAP*
Ga0062386_1011284851	3300004152	Bog Forest Soil	MGKWGSSVFSLSFVVVIAGLAFGGATTLIGFGGLLGTSFHRALGTPLPLPTLRSPFERRLYICVGVAGFVVWISSFL
Ga0062386_1013265332	3300004152	Bog Forest Soil	AVFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRALGTPLPLPTIHNASERWLYVCVGTAGLVVWGSVFLYSLKVAP*
Ga0062386_1014556401	3300004152	Bog Forest Soil	VFSLRFVVVVAGLAFGGATALIGFGGLLGTSFHRALGTPLPLPTIHNQFERRLYVYVGVAGFVVWACAFLYSLKIAP*
Ga0070766_112839181	3300005921	Soil	VGSVVFSLSFILIIAGLAFGGATTLIGFGGLLAASFHRALGAPLPLPTIHNPFERRVYICVGAGGFLVW
Ga0075029_1010799072	3300006052	Watersheds	VFSLTFVLVIAGLAFGGAMAVIGFGGLLATSFHRALGTPLPLPTLRSPFEKRLYIYVGIAGFVVWAGTFLYSLKVAP*
Ga0097691_10124203	3300006055	Arctic Peat Soil	VFSFSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP*
Ga0097691_11469961	3300006055	Arctic Peat Soil	VFSLRFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGIGGFVVWVSAFLYSLKIAP*
Ga0075521_101066292	3300006642	Arctic Peat Soil	MGWVVFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP*
Ga0075521_101318062	3300006642	Arctic Peat Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP*
Ga0066793_105406142	3300009029	Prmafrost Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHSPFERRLYIYVGTGGFVVWVSAFLYSLKIAP*
Ga0116221_13705831	3300009523	Peatlands Soil	GGATTLIGFGGLLGAWFHRALGTPLPLPTLHNPFERRLYIYVGTGGFVVLVSAFLYSLKIAP*
Ga0116111_100028735	3300009616	Peatland	VFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTLHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP*
Ga0116118_10259011	3300009637	Peatland	VFSLSFILIVAGLAFGGATTLIGFGGLLGAWFHRALGAPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLCSLKIAP*
Ga0074046_1000033020	3300010339	Bog Forest Soil	VFSLTFVLVIAGLAFGGSMALVGFGGLLGTSFHRALGAPLPLPTVHNAFEKRLFVGVGIAGIVVWACAFLCSLKIAP*
Ga0074046_100317042	3300010339	Bog Forest Soil	VFSLTFVLVIAGLAFGGAMALIGFGGLLGTSFHRALGTPLPLPTIHSSFERWLYVCVGTAGLVVWGSVFLYSLKIAP*
Ga0074046_101539802	3300010339	Bog Forest Soil	MAGLAFGGTTAVIGFGGLLGTSFHRALGTPLPLPTIHNRFERRLYVCVGLAGLVVWVSALLYSLKIAP*
Ga0074045_100179804	3300010341	Bog Forest Soil	VFSLTFVLVIAGLAFGGGMALVGFGGLLGTSFHRALGTPLPLPTIHNTFERRLYVGVGIAGFVVWAATFLYSLKIAP*
Ga0074045_100649242	3300010341	Bog Forest Soil	VFSLSFVLIMAGLGFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFEQWLYVCVGLAGLVVWVSTFLYSLKIAP*
Ga0074045_100865062	3300010341	Bog Forest Soil	VFSLSFVLIMAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFERWLYVCVGFAGLAVWVSTFLYSLKIAP*
Ga0074045_101570162	3300010341	Bog Forest Soil	VFSLRFVVVIAGLAFGGATALIGFGGLLGTSFHRALGTPLPLPTIHNQFEQRLYVYVGGAGFVVWACAFLYSLKIAP*
Ga0074045_101924312	3300010341	Bog Forest Soil	VFSLSFVLVIAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTLHSPFERRLYLCVGLAGFLVWISAFLCSLRIAP*
Ga0074045_102939211	3300010341	Bog Forest Soil	MFSLPYVVIMAGLSFGGAMTVIGFGGLLGAWFHRELGTPLPLPTLHGPVEKKLYTGVGIAGFVVCGSAFLWSLKLLP*
Ga0074045_104978022	3300010341	Bog Forest Soil	VFSLSFVLIMAGLAFGGATTLIGFGGLLGTSFHRALGTPLPLPTLHSPFERRLYVYVGIAGFVVWVSAFLYSLEIAP*
Ga0074045_105422961	3300010341	Bog Forest Soil	SRVGPVFNLSFILIIAGLAFGGATTLIGFGGLLWASFHRALGTPLPLPTIHNPVERRLYIYVGSAGFVVWISTFLYSLKIAP*
Ga0137378_117415812	3300012210	Vadose Zone Soil	VFSFSFVLIIAGLAFGGAVTLIGFGGLLGTWFHHALGTPLPLPTLHNSFERRLYIGVGMAGFAVWCSAFVWSLKIVP*
Ga0181521_102018102	3300014158	Bog	MAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFERRLYVYVGFAGLAVWVSAFLCSLNIAP*
Ga0181530_100443004	3300014159	Bog	VFSLSFVLIMAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFERRLYVYVGFAGLAVWVSAFLCSLNIAP*
Ga0181523_100050004	3300014165	Bog	VFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRALGTPLPLPTIHNAFERWLYVCVGTAGLVVWGSVFLYSLKIAP*
Ga0182015_100718803	3300014495	Palsa	MAGLAFGGAMTLIGFGGLLMASFHRAMGSPLPLPTLHNAFERRLYVMVGVAGFLVWGCAFFCSLKVTPW*
Ga0182036_109064222	3300016270	Soil	DLPFILIIAGLAFGGAVTLIGFGGFLGTWFHHALGTPLPLPTLHGAAEKRLYLCVGLAGFAVWVSALCISFRVAP
Ga0182041_102757181	3300016294	Soil	VFDLPFILIIAGLAFGGAVTLIGFGGFLGTWFHHALGTPLPLPTLHGAAEKRLYLCVGLAGFAVWVSALCISFRVAP
Ga0182034_106491282	3300016371	Soil	VNEPGRIVFSLPFILIVAGLAFGGAMTVIGFGGFLGTWFHRALGAPLPLPTLHGRNETRLYLYVGLAGFTVWVGTFLISLRVAP
Ga0182037_107787771	3300016404	Soil	LSVVLVIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNAFERRLYIYVGTGGFVIWICAFLCSLKIAP
Ga0181511_14562433	3300016702	Peatland	VFSLSFVLIMAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFERRLYVYVGFAGLAVWVSAFLCSLNIAP
Ga0187803_100327321	3300017934	Freshwater Sediment	VVFSLSFIFIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLCSLKIAP
Ga0187848_100650102	3300017935	Peatland	VFSLSFILIVAGLAFGGATTLIGFGGLLGAWFHRALGAPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLCSLKIAP
Ga0187783_100350833	3300017970	Tropical Peatland	VGCEVFSLTFVLVIAGLAFGGVMTLIGFGGLLGTSFHRALGTPLPLPTIHTAVERRLYACVGFAGLVVWGSAFLYSLKVAP
Ga0187781_101556682	3300017972	Tropical Peatland	VFSLTFVLVIAGLAFGGAMTLVGFGGLLGTSFHRALGTPLPLPTIHSSFERWLYVCVGAAGFVVWGSVFLYSLRVAP
Ga0187780_109670072	3300017973	Tropical Peatland	MFSLTFVLVIAGLAFGGAMTLIGFCGLLGTSLHRALGTPLPLPTIHSSFERWLYVSVGGAGFVVWASVFLLSLKVAP
Ga0187876_100033835	3300018003	Peatland	VGWVVFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTLHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0187874_101849602	3300018019	Peatland	VGWVVFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTLHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAL
Ga0187765_112705211	3300018060	Tropical Peatland	LFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRSLGTPLPLPTIHSSFERWLYVGVGAAGFLVWVSVFLYSLKIAP
Ga0187784_110718082	3300018062	Tropical Peatland	VIAGLAFGGVMTLIGFGGLLGTSFHRALGTPLPLPTIHTAVERRLYACVGFAGLVVWGSAFLYSLKVAP
Ga0187769_100679472	3300018086	Tropical Peatland	VFSLRFVVVIAGLAFGGATALIGFGGLLGTSFHRALGTPLPLPTLHNHIERRLYVYVGVVGFVVWASAFLYSLKIAP
Ga0182031_12190235	3300019787	Bog	VGKKWVAVFSFSYVLIMAGLAFGGAMTLIGFGGLLVTSFHRAMGSPLPLPTLHNASERRLYLLVGAAGFVVWGSAFICSLEHHAVVGNPGSL
Ga0224558_11655622	3300023090	Soil	SFSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0208714_10178413	3300025527	Arctic Peat Soil	VFSFSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0207927_10031608	3300025579	Arctic Peat Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0207926_10571712	3300025619	Arctic Peat Soil	VFSLRFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGIGGFVVWVSAFLYSLKIAP
Ga0209385_10046487	3300025650	Arctic Peat Soil	MGWVVFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0209385_10517203	3300025650	Arctic Peat Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGASFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0209584_100066701	3300025878	Arctic Peat Soil	MGWVVFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLY
Ga0209904_10041602	3300027394	Thawing Permafrost	MGWLVFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTIHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0209446_10099581	3300027698	Bog Forest Soil	VFSLTFVLVIAGLAFGGSMALVGFGGLLGTSFHRALGAPLPLPTVHNAFEKRLFVGVGIVGIVVWACAFLCSLKIAP
Ga0209446_11089381	3300027698	Bog Forest Soil	VGWAVFSLTFVLVIAGLAFGGAMALIGFGGLLGTSFHRALGTPLPLPTIHSSFERWLYVCVGTAGLVVWGSVFLYSL
Ga0209446_11641971	3300027698	Bog Forest Soil	VFSLRFVVVIAGLAFGGATALIGFGGLLGTSFHRALGTPLPLPTIHNQFEQRLYVYVGGAGFVVWACAFLYSLKIAP
Ga0209656_1000059420	3300027812	Bog Forest Soil	VGCAVFSLTFVLVIAGLAFGGGMALVGFGGLLGTSFHRALGTPLPLPTIHNTFERRLYVGVGIAGFVVWAATFLYSLKIAP
Ga0209656_100165513	3300027812	Bog Forest Soil	VFSLTFVLVIAGLAFGGAMALVGFGGLLGTSFHRALGTPLPLPTIHSPFERRLYVYVGVAGFVVWACTFWYSLKIAP
Ga0209656_100352633	3300027812	Bog Forest Soil	VGWAVFSLTFVLVIAGLAFGGAMALIGFGGLLGTSFHRALGTPLPLPTIHSSFERWLYVCVGTAGLVVWGSVFLYSLKIAP
Ga0209656_100513723	3300027812	Bog Forest Soil	VFSLSFVLIMAGLAFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFERWLYVCVGFAGLAVWVSTFLYSLKIAP
Ga0209656_100557762	3300027812	Bog Forest Soil	VFSLRFVIVIAGLAFGGATTLLGFGGLLGTSFHRALGTPLPLPTLHSPFERRLYIYVGAAGFVVWVSAFLYSLKIAP
Ga0209656_100906372	3300027812	Bog Forest Soil	MAGLAFGGATAVIGFGGLLGTSFHRALGTPLPLPTIHNRFERWLYVCVGLAGLVVWVSALLYSLKIAP
Ga0209040_100511083	3300027824	Bog Forest Soil	MAGLGFGGATTVIGFGGLLGTSFHRALGTPLPLPTIHNRFEQWLYVCVGLAGLVVWVSTFLYSLKIAP
Ga0209040_102792682	3300027824	Bog Forest Soil	VFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRALGTPLPLPTLHSSFERWLYVCVGSAGLVVWGSVFLYSLKIAP
Ga0209040_104767621	3300027824	Bog Forest Soil	VGWAVFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRALGTPLPLPTIHNAFERWLYVCVGTAGLVVWGSIFLYSLKIAP
Ga0209039_100518163	3300027825	Bog Forest Soil	VGCAVFSLTFVLVIAGLAFGGSMALVGFGGLLGTSFHRALGAPLPLPTVHNAFEKRLFVGVGIAGIVVWACAFLCSLKIAP
Ga0209039_101696032	3300027825	Bog Forest Soil	MAGLAFGGATTLIGFGGLLGTSFHRALGAPLPLPTLHSAFERRLYVYVGIAGLVVWVSAFLYSLKIAP
Ga0209039_104111691	3300027825	Bog Forest Soil	MFSLSFVLIMAGLAFGGATTLIGFGGLLGTSFHRALGAPLPLPTLHSPLERRLYVYVGIAGLVVWVSAFLYSLKIAP
Ga0310037_103707491	3300030494	Peatlands Soil	VFSLSFILIIAGLAFGGATTLIGFGGLLGAWFHRALGTPLPLPTLHNPFERRLYIYVGTGGFVVWVSAFLYSLKIAP
Ga0265332_102942172	3300031238	Rhizosphere	VFSLCFVLILAGLSFGGGMAVIGFGGLLVASFHRALGTPLPLPTIHNAQERRLYLYVGLAGFVVWGSTFLVSLKIAP
Ga0310686_1027628821	3300031708	Soil	VFSLSYVLIMAGLAFGGSMTLIGFGGLLVTSFHRALGSPLPLPTLHNASERRLYVMVGVAGFLFRRQ
Ga0310917_101369393	3300031833	Soil	GRIVFSLPFILIVAGLAFGGAMTVIGFGGFLGTWFHRALGTPLPLPTLHGRNETRLYLYVGLAGFTVWVGTFLISLRVAP
Ga0306925_101060231	3300031890	Soil	EPGRIVFSLPFILIVAGLAFGGAMTVIGFGGFLGTWFHRALGAPLPLPTFHGRNETRLYLYVGLAGFTVWVGTFLISLRVAP
Ga0306923_103223572	3300031910	Soil	VFSLPFILIVAGLAFGGAMTVIGFGGFLGTWFHRALGTPLPLPTLHGRNETRLYLYVGLAGFTVWVGTFLISLRVAP
Ga0310909_103159551	3300031947	Soil	EPGRIVFSLPFILIVAGLAFGGAMTVIGFGGFLGTWFHRALGAPLPLPTLHGRNETRLYLYVGLAGFTVWVGTFLISLRVAP
Ga0306922_1000495311	3300032001	Soil	VFSLPFILIVAGLAFGGAMTVIGFGGFLGTWFHRALGAPLPLPTLHGRNETRLYLYVGLAGFTVWVGTFLISLRVAP
Ga0318533_102594232	3300032059	Soil	VFSLTFVLVLAGLAFGGAMAVIGFGGLLGTSFHRALGTPLPLPTIHNSFERRLYVYVGIAGFVVWACIFLYSLKVAP
Ga0311301_103878282	3300032160	Peatlands Soil	VFSLRFVVVVAGLAFGGATALIGFGGLLGTSFHRALGTPLPLPTIHNQFERRLYVYVGVAGFVVWACAFLYSLKIAP
Ga0335085_1000878011	3300032770	Soil	VFSLTFVLIIAGLAFGGAMTLIGFGGLLGTSLHHALGTPLPLPTLHSAFERWLYVCVGSVGFLVWAAAFFYSLRIAP
Ga0335085_102361061	3300032770	Soil	VFSLTFVLVIGGLAFGGATTVIGFGGLLGTSLHRALGTPLPLPTLHNPFERRLYVYVGIAGFLVWATAFFFSLRIVP
Ga0335085_104126861	3300032770	Soil	IAGLAFGGAMTVIGFGGLLTTSFHRSMGTPLPLPTIHSSFERWLYVCVGAAGFLVWGSVFFYSLRVAP
Ga0335082_100108032	3300032782	Soil	LTFVLVIAGLAFGGAMTVIGFGGLLTTSFHRSMGTPLPLPTIHSSFERWLYVCVGAAGFLVWGSVFFYSLRVAP
Ga0335082_100724655	3300032782	Soil	VGYVVFSLTFVLIIAGLAFGGAMTLIGFGGLLGTSLHHALGTPLPLPTLHSAFERWLYVCVGSVGFLVWAAAFFYSLRIAP
Ga0335082_107775251	3300032782	Soil	GMTLIGFGGLLGAWFHSFLGAPLPLPALHNAPERRMYLIVGFAGLAIWCSAFVYSLRIAP
Ga0335079_103463142	3300032783	Soil	VQLGWVLFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSFHRALGTPLPLPTLHSSFERRLYVCVGAAGFLVWGSIFLYSLKIAP
Ga0335078_117140481	3300032805	Soil	AGLAFGGATTLIGFGGLLGTSFHRSLGTPLPLPTIHSSFERWLYACVGATGFMVWGSVFLYSLKVAP
Ga0335080_100754204	3300032828	Soil	VFSLTFVLVIAGLAFGGAMAVVGFGGLLATSFHRSLGTPLPLPTIHSASERWLYIYVGLVGLLVWAGVFLYSLKVAP
Ga0335070_117375432	3300032829	Soil	VFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSLHRALGTPLPLPTIHSTFERWLYVCVGAAGFVVWVSVFLLSLKIAP
Ga0335081_111206311	3300032892	Soil	AGLAFGGAMTLIGFGGLLGTSFHRSLGTPLPLPTIHSSFERWLYACVGATGFMVWGSVFLYSLKVAP
Ga0335069_106081082	3300032893	Soil	VGCAVFSLTFVLVIAGLAFGGAMTLIGFGGLLGTSLHRALGTPLPLPTIHSTFERWLYVCVGAAGFVVWVSVFLLSLKIAP
Ga0335083_107148091	3300032954	Soil	FSLTFVLVIAGLAFGGAMTVIGFGGLLTTSFHRSMGTPLPLPTIHSSFERWLYVCVGAAGFLVWGSVFFYSLRVAP
Ga0335083_110269642	3300032954	Soil	VLVIGGLAFGGATTVIGFGGLLGTSLHRALGTPLPLPTLHNPFERRLYVYVGIAGFVVWATAFFFSLRIVP
Ga0335084_105817322	3300033004	Soil	VFSLTFVLVIGGLAFGGATTVIGFGGLLGTSLHRALGTPLPLPTLHNPFERRLYVYVGIAGFVVWATAFFFSLRIVP
Ga0335077_110697762	3300033158	Soil	VSDISFIFVIAGLAFGGATALIGFGGLLGSWFHRALGTPLPLPTLHNPFERRLYICVGLAGLAIWSSAFLYS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086344

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences