Metagenome / Metatranscriptome Family F086246

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086246
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	52 residues
Representative Sequence	VIALPARPLIRWRGWVIAAWAALALLFAPRACHVQRVLAVRG
Number of Associated Samples	96
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.96 %
% of genes near scaffold ends (potentially truncated)	97.30 %
% of genes from short scaffolds (< 2000 bps)	82.88 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.595 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.126 % of family members)
Environment Ontology (ENVO)	Unclassified (53.153 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.360 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00413	Peptidase_M10	33.33
PF04055	Radical_SAM	6.31
PF00144	Beta-lactamase	3.60
PF04134	DCC1-like	1.80
PF00570	HRDC	0.90
PF00378	ECH_1	0.90
PF04654	DUF599	0.90
PF03466	LysR_substrate	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	33.33
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	3.60
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.60
COG2367	Beta-lactamase class A	Defense mechanisms [V]	3.60
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	1.80
COG3821	Uncharacterized membrane protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.59 %
Unclassified	root	N/A	5.41 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	64.86 %
Unclassified	root	N/A	5.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.80 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	64.86 %
Unclassified	root	N/A	5.41 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	29.73 %
Unclassified	root	N/A	5.41 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	29.73 %
Unclassified	root	N/A	5.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.90 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	29.73 %
Unclassified	root	N/A	5.41 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.90 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	29.73 %
Unclassified	root	N/A	5.41 %
Bradyrhizobiaceae bacterium SG-6C	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium SG-6C	0.90 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10150586	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	626	Open in IMG/M
3300002562\|JGI25382J37095_10027744	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2216	Open in IMG/M
3300002562\|JGI25382J37095_10117256	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	913	Open in IMG/M
3300002916\|JGI25389J43894_1076952	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	582	Open in IMG/M
3300002916\|JGI25389J43894_1100280	Not Available	521	Open in IMG/M
3300005166\|Ga0066674_10372441	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	668	Open in IMG/M
3300005167\|Ga0066672_10458616	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	832	Open in IMG/M
3300005172\|Ga0066683_10157053	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300005175\|Ga0066673_10472184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	739	Open in IMG/M
3300005176\|Ga0066679_11024828	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300005178\|Ga0066688_10885212	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	552	Open in IMG/M
3300005180\|Ga0066685_10867345	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	606	Open in IMG/M
3300005186\|Ga0066676_10162587	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300005406\|Ga0070703_10168607	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	837	Open in IMG/M
3300005446\|Ga0066686_10011383	All Organisms → cellular organisms → Bacteria	4646	Open in IMG/M
3300005454\|Ga0066687_10066527	All Organisms → cellular organisms → Bacteria	1730	Open in IMG/M
3300005536\|Ga0070697_100557091	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1005	Open in IMG/M
3300005540\|Ga0066697_10680768	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	564	Open in IMG/M
3300005547\|Ga0070693_100076297	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300005552\|Ga0066701_10219113	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1171	Open in IMG/M
3300005552\|Ga0066701_10578122	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	687	Open in IMG/M
3300005554\|Ga0066661_10723002	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	584	Open in IMG/M
3300005555\|Ga0066692_10873177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	551	Open in IMG/M
3300005558\|Ga0066698_10211607	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300005560\|Ga0066670_10201557	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1194	Open in IMG/M
3300005569\|Ga0066705_10656055	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	637	Open in IMG/M
3300005576\|Ga0066708_11019235	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	514	Open in IMG/M
3300005880\|Ga0075298_1008382	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	829	Open in IMG/M
3300005883\|Ga0075299_1027701	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	595	Open in IMG/M
3300006032\|Ga0066696_10016937	All Organisms → cellular organisms → Bacteria	3662	Open in IMG/M
3300006163\|Ga0070715_10148128	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1147	Open in IMG/M
3300006755\|Ga0079222_10871374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	750	Open in IMG/M
3300006797\|Ga0066659_10316374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1197	Open in IMG/M
3300006797\|Ga0066659_10481619	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	992	Open in IMG/M
3300006806\|Ga0079220_10033731	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2292	Open in IMG/M
3300006846\|Ga0075430_101207950	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300006854\|Ga0075425_100130229	All Organisms → cellular organisms → Bacteria	2876	Open in IMG/M
3300010301\|Ga0134070_10005854	All Organisms → cellular organisms → Bacteria	3755	Open in IMG/M
3300010301\|Ga0134070_10025259	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300010301\|Ga0134070_10312335	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	602	Open in IMG/M
3300010301\|Ga0134070_10316722	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	598	Open in IMG/M
3300010325\|Ga0134064_10012496	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300010325\|Ga0134064_10431605	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	533	Open in IMG/M
3300010329\|Ga0134111_10392304	Not Available	593	Open in IMG/M
3300010333\|Ga0134080_10665480	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300010337\|Ga0134062_10402653	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	670	Open in IMG/M
3300010397\|Ga0134124_10161466	All Organisms → cellular organisms → Bacteria	2007	Open in IMG/M
3300011415\|Ga0137325_1102544	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	651	Open in IMG/M
3300012160\|Ga0137349_1102005	Not Available	534	Open in IMG/M
3300012189\|Ga0137388_10016107	All Organisms → cellular organisms → Bacteria	5477	Open in IMG/M
3300012203\|Ga0137399_10117225	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300012285\|Ga0137370_10044914	All Organisms → cellular organisms → Bacteria	2353	Open in IMG/M
3300012349\|Ga0137387_10215051	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300012351\|Ga0137386_10161666	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300012409\|Ga0134045_1128006	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1322	Open in IMG/M
3300012917\|Ga0137395_10106827	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300012918\|Ga0137396_10063444	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2566	Open in IMG/M
3300012918\|Ga0137396_10184025	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300012925\|Ga0137419_10001598	All Organisms → cellular organisms → Bacteria	9862	Open in IMG/M
3300012931\|Ga0153915_11777788	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	721	Open in IMG/M
3300014157\|Ga0134078_10058725	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300014157\|Ga0134078_10572279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	537	Open in IMG/M
3300015242\|Ga0137412_10622906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium SG-6C	814	Open in IMG/M
3300015264\|Ga0137403_10742593	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	840	Open in IMG/M
3300015359\|Ga0134085_10092386	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300017654\|Ga0134069_1379880	Not Available	510	Open in IMG/M
3300017656\|Ga0134112_10277167	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	670	Open in IMG/M
3300017656\|Ga0134112_10344393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	607	Open in IMG/M
3300017997\|Ga0184610_1233560	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	613	Open in IMG/M
3300018075\|Ga0184632_10261311	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	755	Open in IMG/M
3300018433\|Ga0066667_10514342	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	988	Open in IMG/M
3300018482\|Ga0066669_10591161	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	972	Open in IMG/M
3300019789\|Ga0137408_1418543	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4539	Open in IMG/M
3300019885\|Ga0193747_1141791	Not Available	553	Open in IMG/M
3300021073\|Ga0210378_10123567	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1004	Open in IMG/M
3300021086\|Ga0179596_10039595	All Organisms → cellular organisms → Bacteria	1887	Open in IMG/M
3300021086\|Ga0179596_10336986	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	756	Open in IMG/M
3300024330\|Ga0137417_1452035	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300025327\|Ga0209751_11149638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	573	Open in IMG/M
3300025885\|Ga0207653_10003039	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5331	Open in IMG/M
3300025910\|Ga0207684_10654982	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	895	Open in IMG/M
3300025988\|Ga0208141_1001782	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300026297\|Ga0209237_1242242	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
3300026298\|Ga0209236_1259339	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300026301\|Ga0209238_1051219	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300026306\|Ga0209468_1161141	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	574	Open in IMG/M
3300026310\|Ga0209239_1374920	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	500	Open in IMG/M
3300026313\|Ga0209761_1168591	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1011	Open in IMG/M
3300026317\|Ga0209154_1290256	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	541	Open in IMG/M
3300026320\|Ga0209131_1294652	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	608	Open in IMG/M
3300026322\|Ga0209687_1186809	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	644	Open in IMG/M
3300026333\|Ga0209158_1349120	Not Available	514	Open in IMG/M
3300026528\|Ga0209378_1135735	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1022	Open in IMG/M
3300026537\|Ga0209157_1098523	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300026537\|Ga0209157_1204453	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	830	Open in IMG/M
3300026538\|Ga0209056_10400579	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	844	Open in IMG/M
3300026700\|Ga0208474_100326	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1125	Open in IMG/M
3300027266\|Ga0209215_1003053	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300027643\|Ga0209076_1008671	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2553	Open in IMG/M
3300027655\|Ga0209388_1175835	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	599	Open in IMG/M
3300027765\|Ga0209073_10012584	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2332	Open in IMG/M
3300027765\|Ga0209073_10313420	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	624	Open in IMG/M
3300027862\|Ga0209701_10359617	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	821	Open in IMG/M
3300028884\|Ga0307308_10514505	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	574	Open in IMG/M
3300030998\|Ga0073996_11731882	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1060	Open in IMG/M
3300031576\|Ga0247727_10204739	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300031720\|Ga0307469_10083189	All Organisms → cellular organisms → Bacteria	2176	Open in IMG/M
3300031720\|Ga0307469_10097679	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300031820\|Ga0307473_11132621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	578	Open in IMG/M
3300031962\|Ga0307479_10823419	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	903	Open in IMG/M
3300032205\|Ga0307472_101563421	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	646	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.20%
Host-Associated	Host-Associated	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.79%
Aquatic	Environmental → Aquatic	5.41%
Plants	Host-Associated → Plants	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.89%
Sediment	Environmental → Aquatic → Sediment	3.60%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%
Cave	Environmental → Terrestrial → Cave	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.18%
Loam	Environmental → Terrestrial → Soil → Loam	9.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	37.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.13%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.22%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	14.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.60%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.70%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.90%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005880	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201	Environmental	Open in IMG/M
3300005883	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025988	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101 (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026700	Grasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN350 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_101505861	3300002558	Grasslands Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASETTEAAR
JGI25382J37095_100277441	3300002562	Grasslands Soil	VIALPARTLVRWRGWVIAAWALLALLFVPKAAHVQRVLAVRGTAVE
JGI25382J37095_101172561	3300002562	Grasslands Soil	LFALPXTFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGISETTEASRAT
JGI25389J43894_10769521	3300002916	Grasslands Soil	VIALPAASIIRRRGWVLAAWAALFALFAPRACHVQQVLALRGATSETTEASRGTELLKQAFRTPF
JGI25389J43894_11002801	3300002916	Grasslands Soil	VIALPAAPLIRWRGWVIAAWAVLALLFAPRAIDVQDVLALRGGASETT
Ga0066674_103724411	3300005166	Soil	VFALPAAPLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASETTESARASELLKQAFPS
Ga0066672_104586162	3300005167	Soil	VIALPAASIIRRRGWVLAAWAALFALFAPRACHVQQVLALRGATSETTEASRGTELLKQAFRTPFAD
Ga0066683_101570531	3300005172	Soil	MFALPAGPLVRWRGGVIAAWAALALLFAPRASHVQQVLALRGG
Ga0066673_104721841	3300005175	Soil	VIALPARQIVRWRAWVIGAWAILALLFVPKAAHVQRVLAVRGMN
Ga0066679_110248281	3300005176	Soil	VFALPAAPLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASETTESARASELLKQAFP
Ga0066688_108852122	3300005178	Soil	VIALPARQLVRWRVWVIAAWAVLALLFVPKATHVQRVLAVRGTN
Ga0066685_108673452	3300005180	Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKATHVQRVLAVRGMNV
Ga0066676_101625871	3300005186	Soil	VFALPAAPLIRWRVLVIAAWAALALLFAPRASHVQEVLALRGGASER
Ga0070703_101686072	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VITLPGKHVIRWRVWVIAAWAALAALFAPKATHVGRVLALRGSAVEHSES
Ga0066686_100113831	3300005446	Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKATHVQRVLAV
Ga0066687_100665273	3300005454	Soil	VIALPAARIIRWRGWVLAAWAALFALFAPRACRVQQVLALRGGTSEATEASRATELLKGAFRTPFA
Ga0070697_1005570911	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VFALPAAPIIRRRGWVIVAWAALALLFGPRACHVQQVLALRGGGSESTESSRATALLKQ
Ga0066697_106807682	3300005540	Soil	VIALPAAPIIRRRGWVIVAWTALALLFGPRACHVQQALALRGSGSETTESSRGTVLLKEAFPTPFADYVA
Ga0070693_1000762973	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LITLPGKHVVRWRVWIIAAWAALAVLFAPKASHVQQVLAVRGGAVERSE
Ga0066701_102191131	3300005552	Soil	VFALPAVPLVRWRGWVIAAWAALALLFAPRASHVQEVLA
Ga0066701_105781222	3300005552	Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKATHVQRVLAVRGMNVE
Ga0066661_107230021	3300005554	Soil	VIALPARQLVRWRVWVIAAWAVLALLFVPKATHVQRVLAVRGT
Ga0066692_108731771	3300005555	Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKATHVQRVLAVRGMNVEQTESARA
Ga0066698_102116071	3300005558	Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGISETTEASRATELLKQAFPSPF
Ga0066670_102015571	3300005560	Soil	VFALPAAPLIRWRVLVIAAWAALALLFAPRASHVQEVLALRGGASERTESARA
Ga0066705_106560552	3300005569	Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASETTEAARATDLLK
Ga0066708_110192352	3300005576	Soil	VIALPARQLVRWRVWVIAAWAVLALLFVPKATHVQRVLA
Ga0075298_10083821	3300005880	Rice Paddy Soil	VIALPANALIRWRAWVIAAWAALALVFAPRAAHVQRVL
Ga0075299_10277011	3300005883	Rice Paddy Soil	VIALPARQLVRWRGWVIAAWAVLALLFVPKATHVQRVLAV
Ga0066696_100169375	3300006032	Soil	VFALPAAPIIRRRGWVIVAWAALALLFGPRACHVQQVLALRGSGSETTESSRATQLLKEAFPTP
Ga0070715_101481281	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VITLPAAPIIRLRGWVIAAWAALAFLFGPRACHVQQALALRGSGSETTEASRATELLKKAFPTP
Ga0079222_108713742	3300006755	Agricultural Soil	VIALPAAPIIRLRGWVIAAWAALAFWFGPRACHVQQSLALRGSGSETTEASRATELLK
Ga0066659_103163741	3300006797	Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGG
Ga0066659_104816192	3300006797	Soil	VFALPAVPLVRWRGWVIAAWAALALLFAPRASHVQEVLALRGSGSE
Ga0079220_100337311	3300006806	Agricultural Soil	VIALPAAPLIRLRGWVIAAWAALAFLFGPRACHVQQALAL
Ga0075430_1012079501	3300006846	Populus Rhizosphere	VVALPAKAIIRYRGWVIAAWAAVALLFAPEAARVHDLLTVRGEYRAPTE
Ga0075425_1001302291	3300006854	Populus Rhizosphere	VIALPARQIVRWRVWVIAAWAVLALLFVPKATHVQRVLAVRGMNVEQT
Ga0134070_100058546	3300010301	Grasslands Soil	VIALPARQLIRWRGWVIGAWAVLALLFVPKAAHVQRV
Ga0134070_100252591	3300010301	Grasslands Soil	MPAQLLFALPATFLVRWRGWVIAAWAALALLFAPRASRVQQVLALRGGGNEATEAARATDLLKQA
Ga0134070_103123351	3300010301	Grasslands Soil	VFALPAGPLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASETTESARASELLKQA
Ga0134070_103167221	3300010301	Grasslands Soil	MFALPAGPLVRWRGGVIAAWAALALLFAPRASHVQQVLALR
Ga0134064_100124963	3300010325	Grasslands Soil	MFALPAGPLVRWRAGVIAVWTALALLFAPRATHVQQVLALRGGASE
Ga0134064_104316052	3300010325	Grasslands Soil	VFALPAAPLIRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASERTESARAT
Ga0134111_103923041	3300010329	Grasslands Soil	VFTLPARPLIRWRGWVIAAWAALALLFAPQATHVQRVLAVRGAFVEATESARANQLI
Ga0134080_106654802	3300010333	Grasslands Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGISETTEASRATELLKQAFPSPFADYV
Ga0134062_104026532	3300010337	Grasslands Soil	VIALPARQIVRWRGWVIGAWAVLALLFVPKAAHVQRVL
Ga0134124_101614663	3300010397	Terrestrial Soil	LITLPGKHVVRWRVWIIAAWAALAVLFAPKASHVQQVLAVRGGAVERSESARASQLLR
Ga0137325_11025441	3300011415	Soil	VIALPANALIRWRAWVIAAWAALALVFAPRAAHVQRFLDVRG
Ga0137349_11020051	3300012160	Soil	VIALPANALIRWRAWVIAAWAALALVFAPRAAHVQRFLD
Ga0137388_100161078	3300012189	Vadose Zone Soil	VIALPAAPIIRFRGWVLAVWAALFVLFAPRACHVQQALALRGGTTEPTEASRATELLKSAFP
Ga0137399_101172253	3300012203	Vadose Zone Soil	VFALPAAPIIRKRGWVIVAWAALALLFGPRACHVQQVLALRGGGNESTESSRATALLKEAFPTPFADYVA
Ga0137370_100449141	3300012285	Vadose Zone Soil	VIALPARQLIRWRGWVIGAWAVLALLFVPKAAHVQR
Ga0137387_102150511	3300012349	Vadose Zone Soil	VFALPAVPLVRWRGWVIAAWAALALLFAPRASHVQEV
Ga0137386_101616663	3300012351	Vadose Zone Soil	MFALPAGPLVRWRGGVIAAWAALALLFAPRASHVQQVLALRGGASETTESAR
Ga0134045_11280061	3300012409	Grasslands Soil	VIALPARQIVRWRAWLIGAWAIIALLFVPKARHVQRVLALRGMNFEQTES
Ga0137395_101068273	3300012917	Vadose Zone Soil	VIALPANALIRWRAWVIAAWAALALVFAPRAAHVQRVLDVRG
Ga0137396_100634441	3300012918	Vadose Zone Soil	VIALPARPLIRWRGWVIAAWAALALLFAPRACHVQRVLAVRG
Ga0137396_101840253	3300012918	Vadose Zone Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKAAHVQRVLAVRGMNVEQTESARA
Ga0137419_100015981	3300012925	Vadose Zone Soil	VFALPAVPLVRWRGWVIAAWAALALLFAPRASHVPQV
Ga0153915_117777882	3300012931	Freshwater Wetlands	VIALPAAPIIRRRGWVIAAWAALALLFGPRACHVQQVLALRGAGSETTESNRATDLLKQAFPTPFADYVAIVV
Ga0134078_100587253	3300014157	Grasslands Soil	VIALPAASIIRRRGWVLAAWAALFALFAPRACHVQQVLALRGATSETTEASRAT
Ga0134078_105722791	3300014157	Grasslands Soil	MFALPAGPLVRWRGGVIAAWAALALLFAPRASHVQQVLALRGGASETTESARASELLKQA
Ga0137412_106229061	3300015242	Vadose Zone Soil	VFALPAAPIIRKRGWVIVAWAALALLFGPRACRVQQVLALRGGGSESTESSRGTALLKEAFP
Ga0137403_107425932	3300015264	Vadose Zone Soil	VIALPAKQLVRWRGWVLGARAILGLLFVPKAAHVQRVLAVRGTPVSRSE
Ga0134085_100923861	3300015359	Grasslands Soil	VIALPARQLIRWRGWVIGAWAVLALLFVPKAAHVQRVLAVRGMNVEQTESARA
Ga0134069_13798802	3300017654	Grasslands Soil	VIALPAAPLIRWRGWVIAAWAVLALLFAPRAIDVQDVLALRGGASETTEA
Ga0134112_102771672	3300017656	Grasslands Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGISETTE
Ga0134112_103443932	3300017656	Grasslands Soil	VIALPAAPIIRRRGWVIVAWAALALLFGPRACHVQQVLALRGGGSETTESSRATQLLKE
Ga0184610_12335601	3300017997	Groundwater Sediment	VIALPARPLIRWRGWVIAAWAALALLFAPRACHVQRVLAVRGSNVEATESA
Ga0184632_102613111	3300018075	Groundwater Sediment	VFALPARPLIRWRGWVIAAWAALALLFAPRACHVQRVLAVRGAFVEATESAHAN
Ga0066667_105143421	3300018433	Grasslands Soil	VFALPAAPLVRWRGWVIAAWAALALLFAPRASHVQQVLALRGGASETTESARASE
Ga0066669_105911612	3300018482	Grasslands Soil	VFALPAAPLIRWRVLVIAAWAALALLFAPRASHVQEVLALRGGASERTESARAT
Ga0137408_141854310	3300019789	Vadose Zone Soil	VIALPARQIVRWRGWVIGAWAVLALLFVPKAAHVQRVLAVRG
Ga0193747_11417912	3300019885	Soil	VIALPAKALIRWRAWVIAAWAALALVFAPRAAHVQRVLDVRGT
Ga0210378_101235671	3300021073	Groundwater Sediment	VIALPARRIVRWRGWVIAAWAVLALLFAPKATHVQRVLAV
Ga0179596_100395951	3300021086	Vadose Zone Soil	VIALPARQIVRWRGWVIGAWAVLALLFVPKAAHVQRVLAVR
Ga0179596_103369861	3300021086	Vadose Zone Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKAAHVQRVLAV
Ga0137417_14520353	3300024330	Vadose Zone Soil	VIALPARQIVRWRGWVIGAWAVLALLFVPKAAHVQRVLAVRGMNVAETE
Ga0209751_111496382	3300025327	Soil	VFTLPARPLIRWRGWVIAAWAALALLFAPRATHVQRVLAVRGAFVESTESARASELVRSA
Ga0207653_100030397	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VFALPAAPIIRKRGWVIVAWAALALLFGPRACHVQQVLALRGGGSESTESSRATALLKQVFATPFAD
Ga0207684_106549822	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VIALPARQLVRWRGWVIGAWAVLALLFVPKAAHVQRVLAVRGMNVEQ
Ga0208141_10017821	3300025988	Rice Paddy Soil	VIALPARQLVRWRGWVIAAWAVLALLFVPKATHVQRVLAVRGMNVELT
Ga0209237_12422421	3300026297	Grasslands Soil	VFALPAAPIIRRRGWVIVAWAALAFLFGPRACHVQQVLALRGGGSETTESSRATELLKKAFPTPFADY
Ga0209236_12593391	3300026298	Grasslands Soil	VFVLPAAPIIRRRGWVIVTWAALALLFGPRACHVQQVLALRGGGSETTESSRGTQLLKEAFPTPFADYV
Ga0209238_10512191	3300026301	Grasslands Soil	VIALPAASIIRRRGWVLAAWAALFALFAPRACHVQQVLALRGATSEATEASRGTELLKQAFRTPFADYVGIV
Ga0209468_11611411	3300026306	Soil	VFALPAAPIIRRRGWVIVAWAALAFLFGPRACHVQQVLALRGGGSETTESNRATELLKK
Ga0209239_13749202	3300026310	Grasslands Soil	VFALPAASLIRRRGWVVAAWAALALLFTPRACRVQQVLALRGGGRESTESNRATELLKEAFPTPFADYV
Ga0209761_11685911	3300026313	Grasslands Soil	VIALPAAPLIRWRGWVIAAWAALALLFAPRAIDVQEVLALR
Ga0209154_12902561	3300026317	Soil	LFALPATFLVRWRGWVIAAWAALALLFAPRASHVQQVLALRG
Ga0209131_12946521	3300026320	Grasslands Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKATHVQR
Ga0209687_11868091	3300026322	Soil	VIALPAAPIIRWRGWVLAAWAALFALFAPRACRVQQVLALRGGTSEATEASRATELLKD
Ga0209158_13491202	3300026333	Soil	MIALPARTLVRWRGWVIAAWALLALLFVPKAAHVQRVLAVRGTA
Ga0209378_11357352	3300026528	Soil	VIALPARQIVRSRGWVIGAWAVLALLFVPKATHVQRVLALRGMNVEQTESARASQL
Ga0209157_10985233	3300026537	Soil	VIALPARQLVRWRAWVIGAWAVLALLFVPKATHVQRVLAV
Ga0209157_12044532	3300026537	Soil	VFALPAAPLIRWRVLVIAAWAALALLFAPRASHVQEVLALRGGASERTESARATELLKQEGGSF
Ga0209056_104005792	3300026538	Soil	VIALPAAPLIRWRGWVIAAWAVLALLFAPRAIDVQDVLAL
Ga0208474_1003262	3300026700	Soil	VITLPAAPIIRLRGWVIAAWAALALLFGPRACHVQQALALRGSGSETTEASRATELLKKAFPTPFADYVAIVI
Ga0209215_10030531	3300027266	Forest Soil	VIALPGKLVVRWRGWVIAAWGVLALLFAPKATHVQRVLAVRGTAVEQSESGRASQLIR
Ga0209076_10086711	3300027643	Vadose Zone Soil	VIALPAKQLVRWRGWVLSAWAILGLLFVPKAAHVQRVLAV
Ga0209388_11758351	3300027655	Vadose Zone Soil	VIALPARQIVRWRGWVIGAWAVLALLFVPKATHVQRVLAVRGMNVEQTESARA
Ga0209073_100125844	3300027765	Agricultural Soil	VIALPAAPLIRLRGWVIAAWAALAFLFGPRACHVQQALALRGSGSETTEASRA
Ga0209073_103134201	3300027765	Agricultural Soil	VIALPARQLVRWRGWVIGAWAVLALLFVPKATHVQRVLAVR
Ga0209701_103596171	3300027862	Vadose Zone Soil	VFALPAAPIIRKRGWVIVAWAALALLFGPRACHVQQVLALRGGGSESTESSRATALLKEVFPT
Ga0307308_105145052	3300028884	Soil	VIALPARQLVRWRVWVIGAWALLALLFVPKAAHVQRVLAVRGTNVEQTESARAS
Ga0073996_117318821	3300030998	Soil	VIALPAKQLVRWRGWVIAAWAVLALLFAPKATHVQRVLAVRGTAVEQTESARASLLIREKEN
Ga0247727_102047393	3300031576	Biofilm	VIALPARPLIRWRGWVIAAWAALTLLFAPRACHVQRVLAVRGAFVEATESARANQL
Ga0307469_100831893	3300031720	Hardwood Forest Soil	VITLPAAPIIRLRGWVIAAWAALALLFGPRACHVQQALALRGSGSETTEASRATELLKKAFPTPFA
Ga0307469_100976793	3300031720	Hardwood Forest Soil	VITLPGKHVIRWRVWVIAAWAALAALFAPKATHVGRVLALRGSAVEHSESER
Ga0307473_111326211	3300031820	Hardwood Forest Soil	VIALPARQIVRWRAWVIGAWAIVALLFVPKATHVQRVLALR
Ga0307479_108234191	3300031962	Hardwood Forest Soil	VIALPAAPIIRRRGWVLAAWAALFVLFAPRARHVQHVLALRGGTSEATEASRGTELLKQAFRTPFAD
Ga0307472_1015634211	3300032205	Hardwood Forest Soil	VFALPAAPIIRRRGWVIVAWAALALLFGPRACHVQQVLALRGGGSETTESSRATQLLKEAFPTPFAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086246

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences