Basic Information | |
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Family ID | F086145 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 51 residues |
Representative Sequence | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 79.28 % |
% of genes near scaffold ends (potentially truncated) | 28.83 % |
% of genes from short scaffolds (< 2000 bps) | 73.87 % |
Associated GOLD sequencing projects | 75 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (69.369 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (24.324 % of family members) |
Environment Ontology (ENVO) | Unclassified (90.090 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (84.685 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.62% β-sheet: 23.08% Coil/Unstructured: 42.31% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Seawater Marine Marine Marine Background Seawater Marine Seawater Marine Marine Seawater Marine Methane Seep Mesocosm Diffuse Hydrothermal Vent Diffuse Hydrothermal Fluids Hydrothermal Vent Plume |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
LPjun09P16500mDRAFT_10483262 | 3300000179 | Marine | MRRIVCKAYAGYWEGIFYTQAASRGXLKLLVFFLIWQKKTTVSLKIXIIVRV* |
LPjun09P12500mDRAFT_10227983 | 3300000222 | Marine | MRRIVCKGCAGYLGGIFYTQAXSRGXLKLLAFFLIWQKKTTVSLKIXIIVRV* |
LPfeb09P12500mDRAFT_10119922 | 3300000248 | Marine | MRRIVCKAYAGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV* |
LP_F_10_SI03_100DRAFT_10559052 | 3300000257 | Marine | MRRIAXKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIXIIVRV* |
GBIDBA_100402517 | 3300001683 | Hydrothermal Vent Plume | MRRIVCKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
JGI24818J35693_10118522 | 3300002526 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
JGI24819J35694_10113142 | 3300002528 | Marine | MRRIVCKAYAGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
JGI26063J44948_10989621 | 3300002965 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVRLKIPIIVRV* |
JGI26239J51126_10143913 | 3300003498 | Marine | MRRIARKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
JGI26243J51142_10122101 | 3300003501 | Marine | MRRIACKGCAGYWGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
JGI26249J51723_10047622 | 3300003585 | Marine | MRRIACKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
JGI26256J51712_10101542 | 3300003587 | Marine | MRRIAXKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
JGI26255J51710_10116963 | 3300003596 | Marine | MRRIACKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV* |
Ga0063037_1192142 | 3300003979 | Diffuse Hydrothermal Vent | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0066606_100820511 | 3300004280 | Marine | MRRIACKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKI |
Ga0066860_101939331 | 3300005399 | Marine | MRRIICKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKVPIIVRV* |
Ga0066867_101559952 | 3300005400 | Marine | MRRIVCKGYADYWEGIFYIQAASRAYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
Ga0066867_103014951 | 3300005400 | Marine | MRRIVYKECAGCWEGIFYTQAVSRGYLKFLAFFLIWQKKTTVSLKIPI |
Ga0066851_102364821 | 3300005427 | Marine | MRRIVCKGYADYWEGIFYIQAASRAYLKLLVFFLIWQKKTTVSLKIPIIV |
Ga0066827_100386961 | 3300005509 | Marine | MRRIVCKGYADCWEGIFYIQAASRAYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
Ga0066380_100162773 | 3300005948 | Marine | MRRIVCKGYAGCWGDIFYIQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0066373_102200052 | 3300006011 | Marine | MRRIVCKGYAGCWEDIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0066382_102362892 | 3300006013 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTV |
Ga0081592_10352414 | 3300006076 | Diffuse Hydrothermal Fluids | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVRLKIPIIVRV* |
Ga0066836_104830942 | 3300006166 | Marine | MRRIVCKGYAGYWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068470_10868971 | 3300006308 | Marine | YWGDIFYTQATNRGYLKLLAFFLIWQKKTTVSLKISIIVRV* |
Ga0068470_11363915 | 3300006308 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV* |
Ga0068470_14442012 | 3300006308 | Marine | MRRKVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVSV* |
Ga0068471_11278397 | 3300006310 | Marine | MRRIVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV* |
Ga0068471_11416087 | 3300006310 | Marine | MRRIVCKGYAGCREGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068471_11927953 | 3300006310 | Marine | CADYWGDIFYTQATNRGYLKLLAFFLIWQKKTTVSLKISIIVRV* |
Ga0068471_12070802 | 3300006310 | Marine | MRRKVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVGLKIPVIVCV* |
Ga0068471_15190374 | 3300006310 | Marine | MRRKVCMGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068471_15720862 | 3300006310 | Marine | MRRIVCKGCAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068471_15720873 | 3300006310 | Marine | MRRIVCKGYAGYWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVSV* |
Ga0068471_15900863 | 3300006310 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
Ga0068472_101454275 | 3300006313 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV* |
Ga0068472_102001334 | 3300006313 | Marine | MRRIVCKAYAGYWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068472_109152612 | 3300006313 | Marine | VCKAYVGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV* |
Ga0068497_11418063 | 3300006323 | Marine | ADYWGDIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068497_12118622 | 3300006323 | Marine | CKGYAGYWGGIFYIQAASRGYLKLLAFFLIWQKKTTVSLKITIIVRV* |
Ga0068476_12212982 | 3300006324 | Marine | MRRIVCKGYAGCWGGIFYTQGASRGYLKLLAFFLIWQKKTTVSLKISIIVRV* |
Ga0068488_16060541 | 3300006331 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKVPIIVRV* |
Ga0068480_11207575 | 3300006335 | Marine | MRRKVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068480_14224232 | 3300006335 | Marine | MRRIVCKGYAGCWGGIFYTQAASHGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068480_18332531 | 3300006335 | Marine | MRRIVCKGYAGCWEDIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIERV* |
Ga0068502_11717795 | 3300006336 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV* |
Ga0068502_11724141 | 3300006336 | Marine | RRIVCKAYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068502_11724162 | 3300006336 | Marine | MRRIVCKGCAGYLGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVSV* |
Ga0068481_14379302 | 3300006339 | Marine | MRRIVCKGDAGCWGGIFYTQGASHGYLKLLAFFLIWQKKTTVSLKVPIIVSV* |
Ga0068481_14396604 | 3300006339 | Marine | MRRIVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068481_14645224 | 3300006339 | Marine | MRRKVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068481_15111071 | 3300006339 | Marine | MRRIVCKAYAGYWEGIFYTQVASRGYLKLLVFFLIWQKKTTVSLKISIIVRV* |
Ga0068481_15415192 | 3300006339 | Marine | MRRIVCKGYADCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0068503_103274442 | 3300006340 | Marine | MRRIVCKGYADCWEGIFYIQAASRGYLKLLVFFLIWQKKTAVSLKIPIIVRV* |
Ga0068493_103642212 | 3300006341 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
Ga0099957_11733932 | 3300006414 | Marine | MRRKVCKGYAGCWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV* |
Ga0099958_11716012 | 3300006567 | Marine | AYAGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
Ga0105668_10967224 | 3300007758 | Background Seawater | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVGLKISVIVRV* |
Ga0105359_101741282 | 3300008251 | Methane Seep Mesocosm | MRRIVCKGYAGCWEGIFYTQEASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0115659_1383661 | 3300008736 | Marine | MSMRRIVYKGRAGYLGDIFYIQAGSRGYLKFLACFLIWQKKTTVSL |
Ga0118722_10698003 | 3300009376 | Marine | MSMRRIVCKGCAGCWEGIFYTQGESRGYLKLLAFFLIWQKKTTVSLKVPIIVRV* |
Ga0115002_103872092 | 3300009706 | Marine | MRHIACMGYAGCWGGIFYTQGESRGYLKLLAFFLIWQKKTTVSLKIPIIVRV* |
Ga0133547_101888477 | 3300010883 | Marine | MRHIACMGYAGCWGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV* |
Ga0211669_10291471 | 3300020254 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0211645_10204692 | 3300020256 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
Ga0211679_10161162 | 3300020263 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0211602_10325511 | 3300020285 | Marine | CADYWGDIFYTQATNRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0211570_11295802 | 3300020344 | Marine | MRRIVYKECAGCWEGIFYTQAVSRGYLKFLAFFLIWQKKTTVSLKIPIIVRV |
Ga0211660_101340912 | 3300020373 | Marine | KVCKGYADCWEGIFYIQAASRAYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0211680_100274505 | 3300020389 | Marine | MRRIVCKGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVRLKIPIIVRV |
Ga0211552_103101821 | 3300020412 | Marine | SMRRKVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0211578_101394022 | 3300020444 | Marine | MRRKVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0206684_10608162 | 3300021068 | Seawater | MRRIVCKAYAGCWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV |
Ga0206678_101281893 | 3300021084 | Seawater | MRRKVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
Ga0206679_101447783 | 3300021089 | Seawater | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV |
Ga0206681_101978082 | 3300021443 | Seawater | SMRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
(restricted) Ga0233429_12501712 | 3300022902 | Seawater | MRRIACKGGAGYRGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0209360_11757531 | 3300025665 | Marine | RSMRRIACKGCAGYLGGIFYPQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0209663_10327443 | 3300025672 | Marine | MRRIVCKGCAGYLGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0209140_10452353 | 3300025688 | Marine | SMRRIVRKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0209140_11022551 | 3300025688 | Marine | MRRIACKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISI |
Ga0209660_10432133 | 3300025722 | Marine | RRIARKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0209660_11821492 | 3300025722 | Marine | MRRIVCKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSL |
Ga0208750_10152152 | 3300026082 | Marine | MRHIVCKAYAGYWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0207962_10128642 | 3300026091 | Marine | MHRIVCKGHAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0207965_10315292 | 3300026092 | Marine | MRRIICKGYAGCWEDIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0207966_10740512 | 3300026119 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
Ga0208895_10523632 | 3300026207 | Marine | MRRIVCKGYAGCWEDIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0208411_10531012 | 3300026279 | Marine | MRRIVCKGYADYWEGIFYIQAASRAYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0209752_10195843 | 3300027699 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0209228_10893191 | 3300027709 | Marine | KGCADYWGDIFYTQATNRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
Ga0209035_103959181 | 3300027827 | Marine | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKV |
Ga0209089_104149841 | 3300027838 | Marine | MRHIACMGYAGCWGGIFYTQGESRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0209501_100817913 | 3300027844 | Marine | MRHIACMGYAGCWGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0257123_10501493 | 3300028174 | Marine | CAGYLGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0257107_10386152 | 3300028192 | Marine | MRRIVCKAYAGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV |
Ga0257109_10624031 | 3300028487 | Marine | IVCKEYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0302119_100595841 | 3300031606 | Marine | MRRIVCKGYAGCWGGIFYTQAASREYLKLLAFFLIWQKKTTVRLKIPIIVRV |
Ga0302133_101370393 | 3300031646 | Marine | MRHIACMGYAGCWGGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0315328_101388932 | 3300031757 | Seawater | MRHIVCKAYAGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV |
Ga0315328_105476221 | 3300031757 | Seawater | MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRE |
Ga0315328_108641301 | 3300031757 | Seawater | VCKGYAGCWEGISYTQAASHGYLKLLAFFLIWQKKTTVSLKISIIMRV |
Ga0315326_101947603 | 3300031775 | Seawater | MRRIVCKGYAGYWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
Ga0315318_103265962 | 3300031886 | Seawater | WEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV |
Ga0315318_103517471 | 3300031886 | Seawater | IVYKACVGYLGDIFYTQVGIRGYLKLSAFFLIWQKKTTVSLKIAIIVCM |
Ga0315318_108622472 | 3300031886 | Seawater | MRRKVCKGYAGCSEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV |
Ga0315329_100205665 | 3300032048 | Seawater | MRRIVCKAYVGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKISIIVRV |
Ga0315334_103078133 | 3300032360 | Seawater | LRKPSRSTHRIVYKGYADYWGGIFYTQAANHGYLKLLAFFLIGQKKTTVGLKVPIIVRV |
Ga0315334_106616882 | 3300032360 | Seawater | MRRIARKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV |
Ga0310342_1008390202 | 3300032820 | Seawater | MRRIVCKAYAGYWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKISIIVRV |
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