Metagenome / Metatranscriptome Family F086131

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086131
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	50 residues
Representative Sequence	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVKGLKNQWLARDQADPDAGY
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.30 %
% of genes near scaffold ends (potentially truncated)	91.89 %
% of genes from short scaffolds (< 2000 bps)	97.30 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.063 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.712 % of family members)
Environment Ontology (ENVO)	Unclassified (28.829 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.351 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.44% β-sheet: 0.00% Coil/Unstructured: 64.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF08734	GYD	28.83
PF07311	Dodecin	6.31
PF00496	SBP_bac_5	1.80
PF02371	Transposase_20	1.80
PF03992	ABM	1.80
PF00924	MS_channel	0.90
PF01425	Amidase	0.90
PF09996	DUF2237	0.90
PF13358	DDE_3	0.90
PF00210	Ferritin	0.90
PF01053	Cys_Met_Meta_PP	0.90
PF08883	DOPA_dioxygen	0.90
PF13546	DDE_5	0.90
PF03548	LolA	0.90
PF02668	TauD	0.90
PF00872	Transposase_mut	0.90
PF07908	Obsolete Pfam Family	0.90
PF02586	SRAP	0.90
PF01042	Ribonuc_L-PSP	0.90
PF02538	Hydantoinase_B	0.90
PF05368	NmrA	0.90
PF14294	DUF4372	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	28.83
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	6.31
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.80
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.80
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.90
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.90
COG3805	Aromatic ring-cleaving dioxygenase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.90
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.90
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.90
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.90
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.90
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.90
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.90
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.90
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.90
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.90
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.90
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.90
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.90
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.06 %
Unclassified	root	N/A	36.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.06 %
Unclassified	root	N/A	36.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.06 %
Unclassified	root	N/A	36.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.76 %
Unclassified	root	N/A	36.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.94 %
Unclassified	root	N/A	36.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	11.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.21 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.70 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.94 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	10.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.50 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.70 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.94 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	7.21 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	2.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.80 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.94 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	6.31 %
Paraburkholderia xenovorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia xenovorans	2.70 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1.80 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.94 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	6.31 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1.80 %
Paraburkholderia xenovorans LB400	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia xenovorans → Paraburkholderia xenovorans LB400	0.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004081\|Ga0063454_101866976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia xenovorans	528	Open in IMG/M
3300004157\|Ga0062590_100857074	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300005093\|Ga0062594_100317745	All Organisms → cellular organisms → Bacteria → Proteobacteria	1198	Open in IMG/M
3300005165\|Ga0066869_10145290	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300005328\|Ga0070676_10981193	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300005329\|Ga0070683_102415606	All Organisms → cellular organisms → Bacteria → Proteobacteria	504	Open in IMG/M
3300005332\|Ga0066388_105121370	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300005356\|Ga0070674_102097348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia xenovorans	516	Open in IMG/M
3300005436\|Ga0070713_100308512	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300005445\|Ga0070708_101474129	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300005614\|Ga0068856_102027914	Not Available	585	Open in IMG/M
3300005713\|Ga0066905_101298757	Not Available	654	Open in IMG/M
3300005842\|Ga0068858_101671498	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300006028\|Ga0070717_10080978	All Organisms → cellular organisms → Bacteria → Proteobacteria	2725	Open in IMG/M
3300006172\|Ga0075018_10082487	All Organisms → cellular organisms → Bacteria → Proteobacteria	1398	Open in IMG/M
3300006175\|Ga0070712_101889605	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300006176\|Ga0070765_101010482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	786	Open in IMG/M
3300006196\|Ga0075422_10317880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300006358\|Ga0068871_101592896	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300006847\|Ga0075431_101810256	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300006852\|Ga0075433_10442318	Not Available	1146	Open in IMG/M
3300006871\|Ga0075434_101180335	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300009094\|Ga0111539_10083299	All Organisms → cellular organisms → Bacteria → Proteobacteria	3761	Open in IMG/M
3300009094\|Ga0111539_13217765	Not Available	526	Open in IMG/M
3300009147\|Ga0114129_11241583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300009148\|Ga0105243_10344513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1366	Open in IMG/M
3300009177\|Ga0105248_11026293	Not Available	932	Open in IMG/M
3300009177\|Ga0105248_11358979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	804	Open in IMG/M
3300009177\|Ga0105248_12238385	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300009792\|Ga0126374_10794320	Not Available	722	Open in IMG/M
3300009792\|Ga0126374_11004574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300009840\|Ga0126313_10049446	All Organisms → cellular organisms → Bacteria	2959	Open in IMG/M
3300010045\|Ga0126311_10504045	Not Available	947	Open in IMG/M
3300010045\|Ga0126311_10651554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	838	Open in IMG/M
3300010154\|Ga0127503_10202890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
3300010358\|Ga0126370_10420186	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300010360\|Ga0126372_10660848	Not Available	1013	Open in IMG/M
3300010375\|Ga0105239_12714129	Not Available	578	Open in IMG/M
3300010376\|Ga0126381_100913205	All Organisms → cellular organisms → Bacteria → Proteobacteria	1264	Open in IMG/M
3300010398\|Ga0126383_12882397	Not Available	562	Open in IMG/M
3300010400\|Ga0134122_11129023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300010401\|Ga0134121_11648382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300011119\|Ga0105246_10476040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1055	Open in IMG/M
3300012212\|Ga0150985_109790223	Not Available	646	Open in IMG/M
3300012212\|Ga0150985_111590379	Not Available	504	Open in IMG/M
3300012212\|Ga0150985_113666422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	1551	Open in IMG/M
3300012469\|Ga0150984_105448542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	1190	Open in IMG/M
3300012469\|Ga0150984_107038350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	960	Open in IMG/M
3300012469\|Ga0150984_118909467	Not Available	685	Open in IMG/M
3300012951\|Ga0164300_10739021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	601	Open in IMG/M
3300012958\|Ga0164299_10180305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1201	Open in IMG/M
3300012960\|Ga0164301_10227316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1209	Open in IMG/M
3300012984\|Ga0164309_11081622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300012987\|Ga0164307_10199638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1361	Open in IMG/M
3300012987\|Ga0164307_10575159	Not Available	864	Open in IMG/M
3300013296\|Ga0157374_11402085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	721	Open in IMG/M
3300013296\|Ga0157374_12278471	Not Available	569	Open in IMG/M
3300013306\|Ga0163162_10645662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1182	Open in IMG/M
3300013306\|Ga0163162_12084603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	650	Open in IMG/M
3300013306\|Ga0163162_13168843	Not Available	528	Open in IMG/M
3300013308\|Ga0157375_13070651	Not Available	557	Open in IMG/M
3300014325\|Ga0163163_10766034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1028	Open in IMG/M
3300014968\|Ga0157379_10969961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	809	Open in IMG/M
3300014968\|Ga0157379_11652494	Not Available	626	Open in IMG/M
3300014968\|Ga0157379_11754529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	609	Open in IMG/M
3300014969\|Ga0157376_11323536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300015158\|Ga0167622_1045234	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300015373\|Ga0132257_102437501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300015374\|Ga0132255_102927664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300015374\|Ga0132255_105259242	Not Available	548	Open in IMG/M
3300016371\|Ga0182034_11906961	Not Available	524	Open in IMG/M
3300017792\|Ga0163161_10801369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300017792\|Ga0163161_11111755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia xenovorans → Paraburkholderia xenovorans LB400	680	Open in IMG/M
3300017792\|Ga0163161_11647521	Not Available	567	Open in IMG/M
3300018073\|Ga0184624_10444313	Not Available	570	Open in IMG/M
3300018081\|Ga0184625_10055495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1989	Open in IMG/M
3300018466\|Ga0190268_10522994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	813	Open in IMG/M
3300018466\|Ga0190268_11091728	Not Available	648	Open in IMG/M
3300018476\|Ga0190274_13252081	Not Available	547	Open in IMG/M
3300019767\|Ga0190267_10427305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	751	Open in IMG/M
3300020583\|Ga0210401_10362643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1311	Open in IMG/M
3300021171\|Ga0210405_10566300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	887	Open in IMG/M
3300021178\|Ga0210408_10273852	Not Available	1346	Open in IMG/M
3300021181\|Ga0210388_10360331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1278	Open in IMG/M
3300021406\|Ga0210386_10745724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300021475\|Ga0210392_10768229	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300021477\|Ga0210398_11240783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	588	Open in IMG/M
3300021478\|Ga0210402_11384397	Not Available	631	Open in IMG/M
3300021953\|Ga0213880_10020861	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300022533\|Ga0242662_10163248	Not Available	681	Open in IMG/M
3300025981\|Ga0207640_12096388	Not Available	513	Open in IMG/M
3300026023\|Ga0207677_10265958	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300026075\|Ga0207708_11427764	Not Available	608	Open in IMG/M
3300026075\|Ga0207708_11878010	Not Available	525	Open in IMG/M
3300026078\|Ga0207702_10498176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1187	Open in IMG/M
3300026116\|Ga0207674_11341447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300027379\|Ga0209842_1089160	Not Available	529	Open in IMG/M
3300027898\|Ga0209067_10491375	Not Available	696	Open in IMG/M
3300027909\|Ga0209382_11423730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	695	Open in IMG/M
3300028810\|Ga0307294_10304564	Not Available	579	Open in IMG/M
3300030829\|Ga0308203_1068385	Not Available	567	Open in IMG/M
3300030990\|Ga0308178_1046240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	799	Open in IMG/M
3300031057\|Ga0170834_102780999	Not Available	945	Open in IMG/M
3300031720\|Ga0307469_10194089	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300031740\|Ga0307468_101489033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300031945\|Ga0310913_10425776	Not Available	942	Open in IMG/M
3300032174\|Ga0307470_11795134	Not Available	519	Open in IMG/M
3300032205\|Ga0307472_100971833	Not Available	793	Open in IMG/M
3300032261\|Ga0306920_102680651	Not Available	681	Open in IMG/M
3300032261\|Ga0306920_103514905	Not Available	579	Open in IMG/M
3300034268\|Ga0372943_1223722	Not Available	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.56%
Host-Associated	Host-Associated	41.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.05%
Plants	Host-Associated → Plants	41.44%
Aquatic	Environmental → Aquatic	4.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.22%
Sediment	Environmental → Aquatic → Sediment	3.60%
Roots	Host-Associated → Plants → Roots	1.80%
Freshwater	Environmental → Aquatic → Freshwater	0.90%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.81%
Loam	Environmental → Terrestrial → Soil → Loam	9.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Sand	Environmental → Terrestrial → Soil → Sand	0.90%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.60%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.80%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.90%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015158	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1A, Ice margin)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063454_1018669761	3300004081	Soil	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGLQGQWLIRDENDPDAGYSISQW
Ga0062590_1008570741	3300004157	Soil	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVKGLKNQWLARD
Ga0062594_1003177453	3300005093	Soil	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVQGLKNQWL
Ga0066869_101452902	3300005165	Soil	MHMRIVWGRILPGQWDGFEAAYKKASAMRGEVNGLKSQWLVRDQNDRDAG
Ga0070676_109811932	3300005328	Miscanthus Rhizosphere	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVKGLKNQWLARDQADL
Ga0070683_1024156062	3300005329	Corn Rhizosphere	MHMRIIWGRIAAGQWDGFETAYKKATLLRGDVKGLNNQWLARDQNDQDAGYSITLWESEVDM
Ga0066388_1051213701	3300005332	Tropical Forest Soil	MHMRIIWGRIAPGQWDAFEAAYKKAIALRGDVKGLKNQWFARDQNDPDAGYSISLWDTE
Ga0070674_1020973481	3300005356	Miscanthus Rhizosphere	MQMRIVWGRILPGRWDAFEAAYQEAIARRGEVTGLKDQWLLRDQNDPDAG
Ga0070713_1003085122	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MHMRIIWGKIMPGQWNAFEAAFRRALEIRGEVKGLKGQWLLRDQNDPDAGYAV
Ga0070708_1014741291	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVKGLKNQWLARDQADPDAGY
Ga0068856_1020279141	3300005614	Corn Rhizosphere	MHMRIIWGKIMPGQWNAFEVAFRRALEIRGEVKGLKGQWLLRDQND
Ga0066905_1012987571	3300005713	Tropical Forest Soil	MYMRIIWGRIVPGQWDGFEAAFKKAVALRGDVKGLKDHWLARDQNEPDAGYSI
Ga0068858_1016714982	3300005842	Switchgrass Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQADQDAGYSITLWESEADMRAFWD
Ga0070717_100809783	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFMRIIWGKILPGQWDAFEAAFRKALEIRGEPKGLRGQWLIRDENDSDAGYSSSPSPTARFVST*
Ga0075018_100824871	3300006172	Watersheds	WGKILPGQWDAFEAAFKKALEIRGDVKGLKGQWLLRDENDPDAGYSISQSLLSG*
Ga0070712_1018896052	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHMRIVWGKILPGQWDAFEAAFKKALEIRGEAKGLKSQWLLRDQNDPDA
Ga0070765_1010104821	3300006176	Soil	MQMRIIWGKIMPGQWDAFEAAFKKALEVRGEVKGLKGQWLLRDQNDPDAGYA
Ga0075422_103178802	3300006196	Populus Rhizosphere	MYMRIIWGRIASGQCDAFEAAYKKATALRGDVKGLKNQWLARDQADLDAGYSITLWESE
Ga0068871_1015928961	3300006358	Miscanthus Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQGDPDAGYS
Ga0075431_1018102562	3300006847	Populus Rhizosphere	MYMRIIWGRIVHGQWDGFEAAYKEATALRGDVKGLKNQWLAR
Ga0075433_104423181	3300006852	Populus Rhizosphere	MYMRIIWGRIVPGQWDGFEAAFKKAIALRGDVKGLKDHWLARDQNEPDAGY
Ga0075434_1011803353	3300006871	Populus Rhizosphere	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVKGLKNQWLARDQADPDAGYSI
Ga0111539_100832991	3300009094	Populus Rhizosphere	MHMRIIWGRIVPGQWDGLEAAFKKASALRGDAKRLKDHWLARDQNEPDAGYSITVWENEA
Ga0111539_132177651	3300009094	Populus Rhizosphere	MYMRIIWGRIVPGQWDGFEAAFKKAIALRGDVKGLKDHWLARD
Ga0114129_112415832	3300009147	Populus Rhizosphere	MYMRIIWGRIVAGQWDGFEAAYKKAIALRGDVRGLKNQWLARDQADPDAGYSITLWESEADMRTFWD
Ga0105243_103445132	3300009148	Miscanthus Rhizosphere	MYMRIIWGRIASGQWDAFEAAYKKAISLRGDVKGLKNQWFARDQ
Ga0105248_110262932	3300009177	Switchgrass Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKSQWLARDQADPDAGYSITLWES
Ga0105248_113589792	3300009177	Switchgrass Rhizosphere	MAMHMRIIWGKIMPGQWNAFEAAFRRALEIRGEVKGLKGQWLLRDQNDPDAGY
Ga0105248_122383851	3300009177	Switchgrass Rhizosphere	MQMRIIWGKIMPGQWNAFEAAFKRALEIRGDVKGLKGQWL
Ga0126374_107943202	3300009792	Tropical Forest Soil	MYMRIIWGRIAAGQWDGFEAVYKRAPALRGDVKGLKNQWLARDQSDPDAGYSITLWE
Ga0126374_110045742	3300009792	Tropical Forest Soil	MHMRIIWGRIASGQWDAFEAAYKKAISLRGDVKGLKNQWFVRDQNDPDAGYSI
Ga0126313_100494461	3300009840	Serpentine Soil	MEMRIIWGKILPGQWDAFEAAFKKAVEIRGDVKGLKGQWLLRDRNDPDAG
Ga0126311_105040452	3300010045	Serpentine Soil	MHVRIAWGRILPGRWDAFEAAYREAIARRGEVTGLKDQWLLRDRDDPDAGYSVSL*
Ga0126311_106515543	3300010045	Serpentine Soil	MEMRIIWGKILPGQWDAFEAAFKKAVEIRGDVKGLKGQWLLRDRSDPDAGYSI
Ga0127503_102028902	3300010154	Soil	MYMRIIWGRIAHGQWDAFEAAYKKAISLRGDVKGLKNQWLARDQNDPDAGYSISLWD
Ga0126370_104201863	3300010358	Tropical Forest Soil	VFDWKDAKKESDMYMRIIWGRIAAGQWDGFEAAYKKATALRGDVKGLKNQWLARDQGDPDAGYSITLWESEAD
Ga0126372_106608481	3300010360	Tropical Forest Soil	MYMRIIWGRIAAGQWDGFEAVYKRATALRGDVKGLKNQWLARDQSDPDAGYSITLWETEADMRAFWDSKKREEAMA
Ga0105239_127141292	3300010375	Corn Rhizosphere	RRTNEESGMYMRIIWGRIAAGQWDGFEVAYKKATSLRGDVKGLKNQWLARDQGDPDAGYSITLWESEADMRAFWEQEA*
Ga0126381_1009132052	3300010376	Tropical Forest Soil	MHMRIIWGKIMPGQWNAFETAFKRALEIRGEVKGLKMQWLLRDQND
Ga0126383_128823971	3300010398	Tropical Forest Soil	MHMRIIWGRIASGQWDAFEAAYKKAISLRGDVKGLKNQWFVRDQNDPDAGYS
Ga0134122_111290231	3300010400	Terrestrial Soil	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWL
Ga0134121_116483822	3300010401	Terrestrial Soil	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQADPDAGYSITLWES
Ga0105246_104760401	3300011119	Miscanthus Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSVRGDVKGLKNQWLARDQSDPDA
Ga0150985_1097902232	3300012212	Avena Fatua Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPNGLQGQWLIRDE
Ga0150985_1115903791	3300012212	Avena Fatua Rhizosphere	MQMRIIWGKILPGQWDAFEAAFKKALEIRGEVKGLK
Ga0150985_1136664223	3300012212	Avena Fatua Rhizosphere	MQMRIIWGKILPGQWDAFEAAFKKALEIRGDVKG*
Ga0150984_1054485421	3300012469	Avena Fatua Rhizosphere	MRIIWGKILPGQWDAFETAFKKALETRGKPNGLQGQWLIRDE
Ga0150984_1070383501	3300012469	Avena Fatua Rhizosphere	LGRNPMQMRIIWGKILPGQWDAFEAAFKKALEIRGDVKG*
Ga0150984_1189094671	3300012469	Avena Fatua Rhizosphere	MQMRIIWGKILPGQWDAFEAAFKRALEIRGEVKGLK
Ga0164300_107390211	3300012951	Soil	MHMQVVWGRILPGRWSAFEAAYKEAIARRGEVRGLRDQWL
Ga0164299_101803052	3300012958	Soil	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQGDPDAGYSITLW
Ga0164301_102273164	3300012960	Soil	MYMRIIWGRIAAGQWDGFEVAYKKATSLRGDVKGLKNQWLARDQGDPDAGYSITLWESEADMRAFWEQEA*
Ga0164309_110816221	3300012984	Soil	MYMRIIWGRIASGQWDAFEAAYKKAISLRGDVKGLKNQW
Ga0164307_101996381	3300012987	Soil	MYMRIIWGRIAAGQWDGFEVAYKKATSLRGDVKGLKNQWL
Ga0164307_105751592	3300012987	Soil	MHMRIVWGRILPGQWDGFEAAYKKASAMRGEVKGLKS*
Ga0157374_114020851	3300013296	Miscanthus Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGLQGQWLIRDEHD
Ga0157374_122784711	3300013296	Miscanthus Rhizosphere	MQMRIIWGKILPGQWDGFEAAFKQALEIRGEVKGLKKQWLLR
Ga0163162_106456622	3300013306	Switchgrass Rhizosphere	MHMRIIWGKILPGQWDAFEAAFKRALEIRGEVKGLKGQWLLRDQNDPDAGY
Ga0163162_120846033	3300013306	Switchgrass Rhizosphere	MHMRIVWGKILAGQWDVFEAAFKRALEIRGEAKGLKSQWLLRDQNDPDAG
Ga0163162_131688431	3300013306	Switchgrass Rhizosphere	MHMRIVWGRILPGQWDGFEAAYKKASAMRGEVKGLKSQWLVRDQN
Ga0157375_130706511	3300013308	Miscanthus Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGLQGQWLIRDEN
Ga0163163_107660341	3300014325	Switchgrass Rhizosphere	MQMRIIWGKILPGQWDGFEAAFKQALEIRGEVKGLKKQWLLRDQNDPDAGY
Ga0157379_109699611	3300014968	Switchgrass Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGL
Ga0157379_116524941	3300014968	Switchgrass Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGLQGQWLIRDENDPD
Ga0157379_117545291	3300014968	Switchgrass Rhizosphere	MHMRIVWGRILPGQWDAFEAAFTEALETRGEVKGLISQWLLRDQNDPN
Ga0157376_113235362	3300014969	Miscanthus Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQADPDAGYSITLWESEADMR
Ga0167622_10452341	3300015158	Glacier Forefield Soil	MQMRIIWGKILPGQWDAFEAAFKKALEIRGDVKGLKGQWLLRD
Ga0132257_1024375012	3300015373	Arabidopsis Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLGGDVKGLKNQWLARDQADPDAGYSITLWESEADMRAFWDSK
Ga0132255_1029276642	3300015374	Arabidopsis Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQSDPDAGYSIT
Ga0132255_1052592422	3300015374	Arabidopsis Rhizosphere	MYMRIIWGRIVAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQGDPDAGYSITLWESEA
Ga0182034_119069613	3300016371	Soil	MYMRIIWGRIASGQWDAFEAAYKKAVSLRGEVKGLRNQWLARDQND
Ga0163161_108013692	3300017792	Switchgrass Rhizosphere	MYMRIIWGRIAAGQWDGFEAAYKKATSLRGGVKGLKNQWLARDQADPDAGYSITLWESEA
Ga0163161_111117552	3300017792	Switchgrass Rhizosphere	MQMRIIWGKILPGQWDAFEAAFKKALEIRGDVKGLKGQWLLQDQNDPDAGYAISQ
Ga0163161_116475211	3300017792	Switchgrass Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGLQGQWLIRD
Ga0184624_104443131	3300018073	Groundwater Sediment	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVKGLKNQWLARDQADPDAGYSITLW
Ga0184625_100554953	3300018081	Groundwater Sediment	MYMRIIWGRIAAGQWDAFEAAYKEAISLRGDVKGLKNQWFARDQNDPDA
Ga0190268_105229942	3300018466	Soil	MEMRIIWGKILPGQWDTFEAAFKRAVEIRGDVKGLKGQWLLRDRNDPDAGVFNLAMGKRGGYAGILG
Ga0190268_110917282	3300018466	Soil	MHMQIVWGKILPGQWDAFEAAYRKAVAGHGELKGLKSRWLLRDQNDPDAGYSVSLW
Ga0190274_132520811	3300018476	Soil	MHMRIVWGKILPGQWDAFEAAFKKALEIRGQVKGLKSQWLLRDQNDSD
Ga0190267_104273051	3300019767	Soil	MEMRIIWGKVLPGQWDAFEAAFKKAVEIRGDVKGLKGQ
Ga0210401_103626431	3300020583	Soil	MHMRIVWGKILPGQWDAFEKAFVRALEIRGDAKGLVGQW
Ga0210405_105663001	3300021171	Soil	MHMRIVWGKILPGQWDAFEAAFKKALEIRGEAKGLKSQWLL
Ga0210408_102738522	3300021178	Soil	MHMRIVWGRILPGQWDGFEAAYKKASAMRGEVKGLKSQWLVRDQNDRDAGYSI
Ga0210388_103603311	3300021181	Soil	MQMRIIWGKILPGQWDAFEAAFKKALEIRGEVKGLKGQWLL
Ga0210386_107457242	3300021406	Soil	MQMRIIWGKIMPGQWDAFEAAFKKALEIRGEVKGLKGQWLLRDQNDP
Ga0210392_107682291	3300021475	Soil	MHMRIVWGKILPGQWDAFEAAFRKALEIRGEAKGLKSQWLLRDQNDPDAGYS
Ga0210398_112407831	3300021477	Soil	MQMRIIWGKIMPGQWDAFEAAFQKALEIRGQVKGLKAQWLLRD
Ga0210402_113843972	3300021478	Soil	MQMRIIWGKILPGQWEGFQAAFKQALEIRGDVKGLKTQW
Ga0213880_100208612	3300021953	Exposed Rock	MQMRVVWGKILPGQWDAFEAAYKKAMTARGRVKGLRGQWLV
Ga0242662_101632482	3300022533	Soil	MHMRIIWGRIAAGQWDAFEAAYKKAISLRGDVKGLRNQWFLRDQND
Ga0207640_120963881	3300025981	Corn Rhizosphere	MHMQVVWGRILPGRWSAFEAAYKEAIARRGEVRGLRDQWLLRDQNDPDAGYSISL
Ga0207677_102659581	3300026023	Miscanthus Rhizosphere	MQMRVIWGKILPGQWDAFEAAFKRALEIRGEVKGLKGQWLLRDEN
Ga0207708_114277641	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MYMRIIWGRIASGQWDAFEAAYKKATALRGDVQGLKNQWLARDQADPDAGYSITLWES
Ga0207708_118780101	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MFMRIIWGKILPGQWDAFETAFKKALETRGKPKGLQG
Ga0207702_104981761	3300026078	Corn Rhizosphere	MHMRIIWGKIMPGQWNAFEAAFRRALEIRGEVKGLKGQWLLRDQNDPDAGYA
Ga0207674_113414471	3300026116	Corn Rhizosphere	MYMRIIWGRIAAGQWDGFEVAYKKATSLRGDVKGLKNQWLARDQGDPDAGYSITLWESEA
Ga0209842_10891602	3300027379	Groundwater Sand	MYMRIIWGRIVHGQWDGFEAAYKKATALRGDVKGLKNQWLARDQADPD
Ga0209067_104913752	3300027898	Watersheds	MHMRIIWGKILPGQWDAFEAAFKKALEIRGEAKGLKSQW
Ga0209382_114237302	3300027909	Populus Rhizosphere	MHMRIIWGRIVPGQWDGFEAAFKKAISLRGDVKGLKNHWLARDQNEP
Ga0307294_103045641	3300028810	Soil	MHMRIVWGRILPGQWDGFEAAYKKASAMRGEVKGLKTQWLVRDQNDRDAGYSISLWDSDEDMRAFWD
Ga0308203_10683851	3300030829	Soil	MHMRIVWGRILPGQWDGFEAAYKKASAMRGEVKGLKTQWLVRDQNDRDAGYSISLWDSDEDMRAFWDSP
Ga0308178_10462401	3300030990	Soil	MHMRIVWGKILPGQWEAFEAAYKKALELRGDVKGLKSQWLLQDQNDPDAGYSISQW
Ga0170834_1027809992	3300031057	Forest Soil	MHMRIVWGKILPGQWDAFEAAFKKALEIRADAKGLKSQWLLRDQNDPDAG
Ga0307469_101940891	3300031720	Hardwood Forest Soil	MYMRIIWGRIVPGQWDGFEAAFKKAIALRGDVKGL
Ga0307468_1014890331	3300031740	Hardwood Forest Soil	MYMRIIWGRIVAGQWDGFEAAYKKAIALRGDVRGLKNQWLARDQADPDAGY
Ga0310913_104257763	3300031945	Soil	MHMRIIWGRIASGQWEAFEAAFKKAISLRGDVKGLRNQWFVRDQ
Ga0307470_117951341	3300032174	Hardwood Forest Soil	MYMRIIWGRIVAGQWDGFEAAYKKATSLRGDVKGLKNQWLARDQGDPDAGYSITLWES
Ga0307472_1009718331	3300032205	Hardwood Forest Soil	MYMRIIWGRIVPGQWDGFEAAFKKAIALRGDVKGLKDHWLARDQNEP
Ga0306920_1026806511	3300032261	Soil	MHMRIIWGRIASGQWEAFEAAFKKAISLRGDVKGLRNQWFVRDQNDPDAGYSITLW
Ga0306920_1035149052	3300032261	Soil	MHMRIIWGRIASGQWEAFEAAYKKAISLRGDVKGLRNQWFVRDQNDPDAGYSI
Ga0372943_1223722_94_273	3300034268	Soil	MQMRIIWGKILPGQWDAFEAAFKRALEIRGEVKGLKGQWLLRDENDPDAGVFDLAVGKC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086131

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences