Metagenome / Metatranscriptome Family F086128

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086128
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	58 residues
Representative Sequence	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPLPLVHITSSAPSMLIALAAKTPIE
Number of Associated Samples	89
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.37 %
% of genes near scaffold ends (potentially truncated)	39.64 %
% of genes from short scaffolds (< 2000 bps)	90.09 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (42.342 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.270 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.11% β-sheet: 0.00% Coil/Unstructured: 57.89%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02371	Transposase_20	54.05
PF01548	DEDD_Tnp_IS110	10.81
PF14520	HHH_5	2.70
PF02776	TPP_enzyme_N	0.90
PF13458	Peripla_BP_6	0.90
PF08388	GIIM	0.90
PF08402	TOBE_2	0.90
PF11799	IMS_C	0.90
PF13358	DDE_3	0.90
PF02653	BPD_transp_2	0.90
PF07969	Amidohydro_3	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	64.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.78 %
Unclassified	root	N/A	16.22 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.67 %
Unclassified	root	N/A	16.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	63.96 %
Unclassified	root	N/A	16.22 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.22 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.91 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.22 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.80 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.90 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.90 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.22 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.80 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.90 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.90 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.90 %
Beijerinckia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia	0.90 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.22 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.80 %
Mesorhizobium caraganae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium caraganae	0.90 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.90 %
Beijerinckia indica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica	0.90 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.90 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.22 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.80 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	0.90 %
Mesorhizobium caraganae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium caraganae	0.90 %
Beijerinckia indica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica	0.90 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.90 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig26545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1129	Open in IMG/M
3300001131\|JGI12631J13338_1008478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1514	Open in IMG/M
3300001471\|JGI12712J15308_10007471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3010	Open in IMG/M
3300001471\|JGI12712J15308_10030365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Beijerinckia → Beijerinckia indica	1397	Open in IMG/M
3300001471\|JGI12712J15308_10082049	All Organisms → cellular organisms → Bacteria → Proteobacteria	816	Open in IMG/M
3300001546\|JGI12659J15293_10000316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15739	Open in IMG/M
3300001546\|JGI12659J15293_10002213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6004	Open in IMG/M
3300001593\|JGI12635J15846_10308277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300001593\|JGI12635J15846_10888083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300003368\|JGI26340J50214_10014893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2432	Open in IMG/M
3300004479\|Ga0062595_101602580	Not Available	607	Open in IMG/M
3300005367\|Ga0070667_101489942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300005434\|Ga0070709_10638028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300005434\|Ga0070709_11217002	Not Available	606	Open in IMG/M
3300005436\|Ga0070713_102023417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300005439\|Ga0070711_101206243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	655	Open in IMG/M
3300005591\|Ga0070761_10112517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1576	Open in IMG/M
3300005602\|Ga0070762_10155997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1369	Open in IMG/M
3300005602\|Ga0070762_10463835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	825	Open in IMG/M
3300005602\|Ga0070762_11071354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300005610\|Ga0070763_10089255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1537	Open in IMG/M
3300005610\|Ga0070763_10395129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300005712\|Ga0070764_10077805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1741	Open in IMG/M
3300005712\|Ga0070764_10174391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300005712\|Ga0070764_11047358	Not Available	515	Open in IMG/M
3300005841\|Ga0068863_100095389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2823	Open in IMG/M
3300005921\|Ga0070766_10196438	Not Available	1259	Open in IMG/M
3300006059\|Ga0075017_100699332	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300006059\|Ga0075017_100940909	Not Available	671	Open in IMG/M
3300006102\|Ga0075015_100813644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	562	Open in IMG/M
3300006172\|Ga0075018_10257096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300006174\|Ga0075014_100093635	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300006175\|Ga0070712_101075107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300006176\|Ga0070765_100543729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1093	Open in IMG/M
3300006176\|Ga0070765_101997312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300006354\|Ga0075021_10406274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300006576\|Ga0074047_11955418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300009522\|Ga0116218_1359818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300010341\|Ga0074045_10519295	Not Available	764	Open in IMG/M
3300011269\|Ga0137392_10681583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300012203\|Ga0137399_11653369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300012925\|Ga0137419_11264396	Not Available	619	Open in IMG/M
3300012957\|Ga0164303_10592357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300012961\|Ga0164302_10151274	All Organisms → cellular organisms → Bacteria	1367	Open in IMG/M
3300012984\|Ga0164309_10491949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	937	Open in IMG/M
3300012987\|Ga0164307_10550244	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300012989\|Ga0164305_10039418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2672	Open in IMG/M
3300014495\|Ga0182015_10445818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300015089\|Ga0167643_1007977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1508	Open in IMG/M
3300015242\|Ga0137412_10151658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1868	Open in IMG/M
3300020199\|Ga0179592_10378107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300020582\|Ga0210395_10643607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300020583\|Ga0210401_10558258	Not Available	1007	Open in IMG/M
3300021170\|Ga0210400_10631670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	882	Open in IMG/M
3300021171\|Ga0210405_10681258	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300021171\|Ga0210405_10701971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300021178\|Ga0210408_10239796	Not Available	1444	Open in IMG/M
3300021178\|Ga0210408_11154670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	593	Open in IMG/M
3300021180\|Ga0210396_10538271	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300021401\|Ga0210393_10922277	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300021404\|Ga0210389_11060375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300021405\|Ga0210387_11388237	Not Available	604	Open in IMG/M
3300021406\|Ga0210386_10093759	All Organisms → cellular organisms → Bacteria → Proteobacteria	2451	Open in IMG/M
3300021406\|Ga0210386_10238918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1547	Open in IMG/M
3300021406\|Ga0210386_10719009	Not Available	860	Open in IMG/M
3300021432\|Ga0210384_10968277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300021433\|Ga0210391_11517351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300021474\|Ga0210390_10406418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1150	Open in IMG/M
3300021478\|Ga0210402_10047977	Not Available	3730	Open in IMG/M
3300021478\|Ga0210402_11287158	Not Available	658	Open in IMG/M
3300022525\|Ga0242656_1107995	Not Available	552	Open in IMG/M
3300024225\|Ga0224572_1008286	All Organisms → cellular organisms → Bacteria	1921	Open in IMG/M
3300024227\|Ga0228598_1016260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1468	Open in IMG/M
3300024288\|Ga0179589_10323791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300025906\|Ga0207699_10845269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium caraganae	674	Open in IMG/M
3300025916\|Ga0207663_11693102	Not Available	509	Open in IMG/M
3300026078\|Ga0207702_12460267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300026121\|Ga0207683_10570469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1047	Open in IMG/M
3300026481\|Ga0257155_1066425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300027064\|Ga0208724_1000887	All Organisms → cellular organisms → Bacteria → Proteobacteria	2497	Open in IMG/M
3300027096\|Ga0208099_1005657	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300027370\|Ga0209010_1048215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300027505\|Ga0209218_1042806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300027567\|Ga0209115_1106843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300027575\|Ga0209525_1015148	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300027575\|Ga0209525_1026366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1433	Open in IMG/M
3300027605\|Ga0209329_1023571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1252	Open in IMG/M
3300027663\|Ga0208990_1135538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	660	Open in IMG/M
3300027676\|Ga0209333_1015535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2199	Open in IMG/M
3300027684\|Ga0209626_1056474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300027701\|Ga0209447_10008449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3012	Open in IMG/M
3300027727\|Ga0209328_10036137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1520	Open in IMG/M
3300027729\|Ga0209248_10033075	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300027729\|Ga0209248_10195228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300027829\|Ga0209773_10321119	Not Available	645	Open in IMG/M
3300027853\|Ga0209274_10081565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1575	Open in IMG/M
3300027867\|Ga0209167_10543210	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300027889\|Ga0209380_10114540	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300027889\|Ga0209380_10259533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300027894\|Ga0209068_10746901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300027895\|Ga0209624_10684350	Not Available	677	Open in IMG/M
3300028047\|Ga0209526_10197732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1393	Open in IMG/M
3300028906\|Ga0308309_11910330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300030968\|Ga0075376_11451933	Not Available	590	Open in IMG/M
3300031057\|Ga0170834_100209779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	516	Open in IMG/M
3300031128\|Ga0170823_10987536	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300031128\|Ga0170823_10988498	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300031128\|Ga0170823_12535518	All Organisms → cellular organisms → Bacteria	1623	Open in IMG/M
3300031231\|Ga0170824_124724236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	668	Open in IMG/M
3300031708\|Ga0310686_100597561	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300031715\|Ga0307476_10835962	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.69%
Host-Associated	Host-Associated	5.41%
Engineered	Engineered	0.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.88%
Aquatic	Environmental → Aquatic	10.81%
Plants	Host-Associated → Plants	5.41%
Modeled	Engineered → Modeled	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.88%
Sediment	Environmental → Aquatic → Sediment	6.31%
Freshwater	Environmental → Aquatic → Freshwater	4.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.70%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.54%
Loam	Environmental → Terrestrial → Soil → Loam	40.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.80%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	34.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	19.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	14.41%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.41%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030968	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0545.00002060	2166559005	Simulated	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIASAAKTPIE
JGI12631J13338_10084781	3300001131	Forest Soil	RLVRGHVYGLDAEEMSPLALMIRPHGSSPHHSLALVLALTAIRASKPFSLVHITPSAPSMLIALGGENSIE*
JGI12712J15308_100074713	3300001471	Forest Soil	MSPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIAFGENSFE*
JGI12712J15308_100303651	3300001471	Forest Soil	MIRPHGSLPHHSLALVLALTAIRASKPFSLVHITSSAPSMLIALAAKTPIE*
JGI12712J15308_100820492	3300001471	Forest Soil	MSPLALMIVRMALRLHHSLALVLALTAILASKPFPLAHIISSAPSMLIALGGELPIE*
JGI12659J15293_1000031616	3300001546	Forest Soil	MNPLALMIRPHDSSPHHSLALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
JGI12659J15293_100022132	3300001546	Forest Soil	MNPLALMIRPHGSSPHHWLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE*
JGI12635J15846_103082772	3300001593	Forest Soil	RLERGHVYGLDAEGMSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALGGELPIE*
JGI12635J15846_108880832	3300001593	Forest Soil	GRGHVYGLDAEGMSPLALMIRPHGSSPHHSLARVLALTAIRASKPFPLVHITSSAPSMLIALGGELPIE*
JGI26340J50214_100148935	3300003368	Bog Forest Soil	MSPLALMIRPHGSSPDHSLALVLALTAIRASKPFPLVHITSSAPSMLIASAAKLPIE*
Ga0062595_1016025801	3300004479	Soil	MSPLALMIRPLGSSPHHSVALVLALTAIWASEPLPLVHIISSTPSMLIALAEKTPIE*
Ga0070667_1014899421	3300005367	Switchgrass Rhizosphere	PVDAERMNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070709_106380281	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSPLALMIRPHGSSPHHSLALVLALTAILASKPFPLAHITSSAPLMLIALGGKNSLSK*
Ga0070709_112170021	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070713_1020234172	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LRPVDAERMNPLALMIRPRGSSPNHSVALVLALTAIRASEPLPLVHIISSTPSMLIVLAAKTPIE*
Ga0070711_1012062431	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSPLALMIRPLGSSPHHSVALVLALTAIWASEPLPLVHIISSTPSMLIALA
Ga0070761_101125171	3300005591	Soil	LRPVDAEEMSPLALMIRPHGSSPHHSVALVLALIAIRASEPLPLVHIISSRPSMLIALAAKTPIE*
Ga0070762_101559971	3300005602	Soil	LRPVDAEEMSPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALAAKTPIK*
Ga0070762_104638353	3300005602	Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE*
Ga0070762_110713542	3300005602	Soil	MGSVDAERMNPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070763_100892552	3300005610	Soil	MSPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE*
Ga0070763_103951292	3300005610	Soil	MSPLALMIRPHGSSPHHSLALILALTGTGSQAFISSAPSMLIASAAKTPIE*
Ga0070764_100778052	3300005712	Soil	MNPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE*
Ga0070764_101743913	3300005712	Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPLPLVHITSSAPSMLIALAAKTPIE*
Ga0070764_110473581	3300005712	Soil	MSPLALMFRPPDSSPHHSLALLLALTGIRASEPLPLVHIISSTPSMLIAFAAKTPIE*
Ga0068863_1000953893	3300005841	Switchgrass Rhizosphere	MNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070766_101964382	3300005921	Soil	MSPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSM
Ga0075017_1006993321	3300006059	Watersheds	MGSVDAEGMSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIA
Ga0075017_1009409092	3300006059	Watersheds	MNPLALMIRPRGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALGGELPIE*
Ga0075015_1008136442	3300006102	Watersheds	MSPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0075018_102570962	3300006172	Watersheds	MIRPHGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0075014_1000936351	3300006174	Watersheds	MGSVDAEEMSPLALMIRPHGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070712_1010751072	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RMNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070765_1005437292	3300006176	Soil	MSPLALMIRPHGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0070765_1019973122	3300006176	Soil	LNPLALMIRPHGSSPDHSVALVLALTAIRASEPLPLVHIISLTPSMLIALAAKTPIK*
Ga0075021_104062741	3300006354	Watersheds	MNPLALMIRPRGSSPHHSLALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0074047_119554181	3300006576	Soil	MNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHITSSAPSMLIALAAKTPIE*
Ga0116218_13598181	3300009522	Peatlands Soil	LIIRPNGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALAAKTPY*
Ga0074045_105192951	3300010341	Bog Forest Soil	MSPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALAAKTPIE*
Ga0137392_106815831	3300011269	Vadose Zone Soil	MSPLALMIRPHGSLPHHSLALILALTGIRASKPFPLVHITSSAPSMLIALAAKTPIE*
Ga0137399_116533692	3300012203	Vadose Zone Soil	MSPLALMIRPHGSLPHHSLALLLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE*
Ga0137419_112643962	3300012925	Vadose Zone Soil	MNPLALMIRPHGSSPHHSLALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIK*
Ga0164303_105923573	3300012957	Soil	MNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAEKTPIG*
Ga0164302_101512742	3300012961	Soil	MGSFDADEMAPLALMIRPPGSLPHHSLALVLALTGIRASKPFPLVHITSWAPSTLIALRRRKLPIE*
Ga0164309_104919492	3300012984	Soil	MNPLALMIRPRGSSPHHSVALVLALTAIWASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0164307_105502442	3300012987	Soil	MSPLALMIRPHGSSPHHSLALILALTRIRASKPFPLVHITSSAPSMLI
Ga0164305_100394183	3300012989	Soil	MNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAEKTPIE*
Ga0182015_104458181	3300014495	Palsa	MSPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPIE*
Ga0167643_10079772	3300015089	Glacier Forefield Soil	MNPLALMIRPRGSLPHHSVALILALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE*
Ga0137412_101516582	3300015242	Vadose Zone Soil	LNPLALMIRPRGSSPHHSVALILALTAIRASEPLPLVHIISSTPSMLIALAAKTPIK*
Ga0179592_103781072	3300020199	Vadose Zone Soil	MSPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0210395_106436072	3300020582	Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPLPLVHITSSAPSMLIALAAKTPIE
Ga0210401_105582583	3300020583	Soil	MNPLALMICPHGSSPHHSLALVLALTGIRASKPFPLVHITPSAPSMLIALGGENPL
Ga0210400_106316702	3300021170	Soil	MNPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITPSAPSMLIALGGENSLSNSL
Ga0210405_106812581	3300021171	Soil	MGSVDAEEMSPLALMIRPHGSSPHHSLALVLALTRIRASKPFPLVHITSSAPSMLIALGGEIE
Ga0210405_107019711	3300021171	Soil	CGKMNPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0210408_102397962	3300021178	Soil	MNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPID
Ga0210408_111546702	3300021178	Soil	MNPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHITSSAPSMLIALAAKTPIG
Ga0210396_105382711	3300021180	Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALGGENSLSNS
Ga0210393_109222772	3300021401	Soil	MGSVDAEVMSPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0210389_110603752	3300021404	Soil	LNPLALMIRPHGSSPDHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0210387_113882371	3300021405	Soil	MNPLALMIRPHDSSPHHSLALVLALTAIRASEPLPLVHIISSTPSMLIALAAK
Ga0210386_100937593	3300021406	Soil	MSPLALMFRPPDSSPHHSLALLLALTGIRASEPLPLVHIISSTPSMLIAFAAKTPIE
Ga0210386_102389182	3300021406	Soil	MNPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0210386_107190091	3300021406	Soil	MSPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALAAKTPYRIAS
Ga0210384_109682772	3300021432	Soil	IRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0210391_115173511	3300021433	Soil	RPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0210390_104064183	3300021474	Soil	MSLLALMIRPHGSSPHHSLALVLALTAIRASKPLPLVHITSSAPSMLIALAAKTPIE
Ga0210402_100479771	3300021478	Soil	MNPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITPSAPSMLIALGGENSLS
Ga0210402_112871581	3300021478	Soil	MSPLALMIRPHGSSPHHSFALILALTAIRASKPFPLVHITSSAPSMLIAFG
Ga0242656_11079952	3300022525	Soil	MSPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSTPSMLIALAAKTPIE
Ga0224572_10082863	3300024225	Rhizosphere	MSPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPFE
Ga0228598_10162602	3300024227	Rhizosphere	MNPLARMIRPRGASPHHSVALVLALTTIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0179589_103237912	3300024288	Vadose Zone Soil	MNPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0207699_108452692	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNPLALMIRPRGSSPHHSVALVLAPTAIRASETLPLVHIISSTPSMLIALAAKTPIE
Ga0207663_116931021	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIDLAAKTPYRIASFRPR
Ga0207702_124602671	3300026078	Corn Rhizosphere	PVDAERMNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPIE
Ga0207683_105704691	3300026121	Miscanthus Rhizosphere	MNPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIASAAKTPIE
Ga0257155_10664252	3300026481	Soil	IRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0208724_10008871	3300027064	Forest Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIK
Ga0208099_10056572	3300027096	Forest Soil	MGSVDAEGMSPLALMIRPRGSSPHHSLALVLALTAIRASEPLPLVHITSSAPSMLIA
Ga0209010_10482152	3300027370	Forest Soil	MSPLALMIRPHGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0209218_10428062	3300027505	Forest Soil	PLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0209115_11068431	3300027567	Forest Soil	LRPVDAERMNPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0209525_10151482	3300027575	Forest Soil	MGSVDTERLNPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIK
Ga0209525_10263661	3300027575	Forest Soil	CLRPVDAEEMSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0209329_10235711	3300027605	Forest Soil	MSPLALMIRPHGSLPHHSLALLLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0208990_11355382	3300027663	Forest Soil	MSPLALMIRPHGSLPHHSLALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIK
Ga0209333_10155353	3300027676	Forest Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFSLVHITSSAPSMLIASAAKTPIE
Ga0209626_10564742	3300027684	Forest Soil	MSPLALIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIK
Ga0209447_100084491	3300027701	Bog Forest Soil	MSPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0209328_100361372	3300027727	Forest Soil	MSPLALMIRPRGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0209248_100330751	3300027729	Bog Forest Soil	MNPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIA
Ga0209248_101952281	3300027729	Bog Forest Soil	ALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0209773_103211191	3300027829	Bog Forest Soil	MVPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALGGENS
Ga0209274_100815652	3300027853	Soil	MSPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALAAKTPIK
Ga0209167_105432101	3300027867	Surface Soil	RQDTRSFGLLTEGMSPLALMIRPHGSSPHHSPALVLALTAIRASKPFPLVHITSSAPSMLTALVGENPIE
Ga0209380_101145401	3300027889	Soil	MGSVDAEEMSPLALMIRPHGSSPHHSLALVLALTRIRASKPFPLVHITSSAPSMLIALGGEN
Ga0209380_102595332	3300027889	Soil	MSPLALMIRPRGSSPHHSVALVLALTAIRASKPLPLVHIISSTPSMLIALAAKTPIE
Ga0209068_107469012	3300027894	Watersheds	MIRPRGASPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0209624_106843501	3300027895	Forest Soil	MNPLALMIRPHDSSPHHSLALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0209526_101977322	3300028047	Forest Soil	LNPLALMIRPRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0308309_119103302	3300028906	Soil	VMNPLALMIRPHGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0075376_114519331	3300030968	Soil	MSPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0170834_1002097791	3300031057	Forest Soil	MSPLALMIRPHGSSPHHSLALVLALAAIRASKPFPLVHITSSAPSMLIASAAKTPYRIASFVQAATGR
Ga0170823_109875361	3300031128	Forest Soil	MSPLALMIRPHGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALG
Ga0170823_109884981	3300031128	Forest Soil	MNPLALMIRPRGSSPHHSLALVLALTGIRASKPFPLVHITSSAPSMLIALG
Ga0170823_125355182	3300031128	Forest Soil	MGSIDAERMNPLALMIRRRGSSPHHSVALVLALTAIRASEPLPLVHIISSTPSMLIALAAKTPIE
Ga0170824_1247242361	3300031231	Forest Soil	ARSCLRPVDAEGMSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIALAAKTPIE
Ga0310686_1005975611	3300031708	Soil	MSPLALMIRPHGSSPHHSLALVLALTAIRASKPFPLVHITSSAPSMLIAL
Ga0307476_108359622	3300031715	Hardwood Forest Soil	MFPLALMIRPHGSSPHHSLALILALTAIRASKPFPLVHITSSAPSMLIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086128

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences