Basic Information | |
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Family ID | F086090 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 50 residues |
Representative Sequence | VAEEHRVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 36.94 % |
% of genes near scaffold ends (potentially truncated) | 39.64 % |
% of genes from short scaffolds (< 2000 bps) | 86.49 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (94.595 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.324 % of family members) |
Environment Ontology (ENVO) | Unclassified (31.532 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.847 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 23.08% Coil/Unstructured: 76.92% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Natural And Restored Wetlands Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Switchgrass Rhizosphere Soil Agricultural Soil Soil Soil Soil Rice Paddy Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Soil Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Sugar Cane Bagasse Incubating Bioreactor |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
FACENCA_2515080 | 2035918004 | Soil | LGVVAEVRRVVCPHCGKEFEGELLAPESTSGPTGFKCPHCRLFVPLERAEPAA |
SwBSRL2_0799.00007980 | 2162886013 | Switchgrass Rhizosphere | LDAVAEERRVVCPHCGKEFEGKLLASEPTAAPTGFKCPHCRLFVPLERAEPAA |
INPgaii200_11192442 | 2228664022 | Soil | LGAVAEERRVVCPHCGKEFEGELLASKPTSGPTGFKCPHCRLFVPLERAEPAA |
NODE_07264797 | 3300000156 | Sugar Cane Bagasse Incubating Bioreactor | MAEEHRVVCPHCGKEFEAELLVAASSPGPRGFKCPHCRLFVPLERAKPAA* |
C688J18823_101927222 | 3300001686 | Soil | VCPHCGKEFEAELLAPESAPGPRGFKCPHCRLFVPAERAEPAA* |
C688J35102_1179360361 | 3300002568 | Soil | LGLVAERQHVVCPHCGKEFEGELLAPESNPGPTGFKCPHCRLFVPLERAEPAA* |
C688J35102_1199280841 | 3300002568 | Soil | LSVVSEEQRVVCPHCGKEFEAELLAPESAPGPRGFKCPHCRLFV |
Ga0055455_100406242 | 3300003990 | Natural And Restored Wetlands | VCPHCGKEFEGELLAAERAPGPTGFKCPHCRLFVPAERAEPAA* |
Ga0062593_1000468742 | 3300004114 | Soil | MAEGQRVVCPHCGKEFEPELMTSVSAHAPEGFKCPHCRLFVPADRATPVADEPAA* |
Ga0062593_1015691342 | 3300004114 | Soil | LVSVAEGHRVVCPHCGKEFEGKPLAAQPTPGPTGYKCPHCRLFVPVERAEPAA* |
Ga0063455_1004662972 | 3300004153 | Soil | LGLVAERHHVVCPHCGKEFEGELLAPESNPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0062589_1027543182 | 3300004156 | Soil | AGTVGAAADRLSPASLVSVAEGHRVVCPHCGKEFEGKPLAAQPTPGPTGYKCPHCRLFVPVERAEPAA* |
Ga0062595_1008107901 | 3300004479 | Soil | LGAVAEERRVVCPHCGKEFEGELLASEPSAGPTGFKCPHCRLFVPLERAEPAA* |
Ga0062595_1012303722 | 3300004479 | Soil | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVPASRAVPAADEPAA* |
Ga0062591_1020165392 | 3300004643 | Soil | EGQRVVCPHCGKEFEPELMTSVSAHAPEGFKCPHCRLFVPADRATPVADEPAA* |
Ga0070683_1012527192 | 3300005329 | Corn Rhizosphere | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVPAGRAVPAADEPAA* |
Ga0070677_105541931 | 3300005333 | Miscanthus Rhizosphere | MAEVHRVVCPHCRKEFESELMKTVSAQAPEGFKCPHCRLFVPASRAVPAADEPAA* |
Ga0070680_1003440111 | 3300005336 | Corn Rhizosphere | VAEEHKVVCPHCGKEFEGELLASDSTAGGYKCPHCRLFVP |
Ga0070682_1012675232 | 3300005337 | Corn Rhizosphere | VAEVHRVVCPHCGKEFEPELMKTASAQSPVGFKCPHCRLFVPADRAVPVADEPAA* |
Ga0068868_1014397861 | 3300005338 | Miscanthus Rhizosphere | VAEEHKVVCPHCGKEFEGELLASDSTAGGYKCPHCRLFVPLER |
Ga0070709_100749613 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | VAEVQRVVCPHCGKEFEPELMKTASAQSPVGFKCPHCRLFVPANRAVPVADEPAA* |
Ga0070714_1001592082 | 3300005435 | Agricultural Soil | VAEVQRVVCPHCGKEFEPELMKTASAQSPVGFKCPHCRLFVPADRAVPVADEPAA* |
Ga0070710_100224884 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | VAEVHRVVCPHCGKEFEPELMKTASAQSPVGFKCPHCRLFVPANRAVPVADEPAA* |
Ga0070662_1000574885 | 3300005457 | Corn Rhizosphere | VAEEHKVVCPHCGKQFEGELLASDSKAAGYKCPHCRLFVPLER |
Ga0073909_101490413 | 3300005526 | Surface Soil | LGLVAEEHRVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0070684_1012954702 | 3300005535 | Corn Rhizosphere | VSEEHHVVCPHCGKEFEGELLASDSAPGPQGFKCPHCRLFVPLERAEPAA* |
Ga0066654_105426872 | 3300005587 | Soil | LTFVSEERRVVCPHCGKEFEAELLAAESAPGPRGFKCPHCRLFVPLERAEPAV* |
Ga0068856_1000517393 | 3300005614 | Corn Rhizosphere | MAEAQRVVCPHCGKEFEPQLLTSVSTHAPAGFKCPHCRLFVPADRAAPVADEPAA* |
Ga0068863_1014670032 | 3300005841 | Switchgrass Rhizosphere | MAEAQRVVCPHCGKEFEPQLLTSVSAHAPAGFKCPHCRLFVPADRATPVADEPAA* |
Ga0068862_1006975662 | 3300005844 | Switchgrass Rhizosphere | PHCGKEFEGELLASDSTAGGYKCPHCRLFVPLERAEPAA* |
Ga0075288_10101472 | 3300005874 | Rice Paddy Soil | LGPVAEQHHVVCPHCGKEFEGELLAAETTPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0075288_10279202 | 3300005874 | Rice Paddy Soil | LEPVAEEHRVVCPHCGKEFEGELLAAERAPGPTGFKCPHCRLFVPAERAEPAA* |
Ga0070716_1005204852 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | VAEVHRVVCPHCSKEFEPELMKTASAQSPVGFKCPHCRLFVPANRAVPVADEPAA* |
Ga0097621_1019015661 | 3300006237 | Miscanthus Rhizosphere | VCPHCGKEFEGELLASDSTAGGYKCPHCRLFVPLE |
Ga0074055_111773021 | 3300006573 | Soil | VCPHCGKEFEGELLASDSTAGGFKCPHCRLFVPLERAEPAA* |
Ga0074059_115372763 | 3300006578 | Soil | VAEEHKVVCPHCGKEFEGELLASDSTAGGFKCPHCRLFVPLERAEPAA* |
Ga0079220_108441372 | 3300006806 | Agricultural Soil | LAIVAEQHRVVCPHCGKEFEAELLTSISAPGPRGFKCPHCRLFVPAERAKEPKDS* |
Ga0075434_1013894532 | 3300006871 | Populus Rhizosphere | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVP |
Ga0075424_1012861802 | 3300006904 | Populus Rhizosphere | VSEEHHVVCPHCGKEFEGELLASASTPGPKGFKCPHCRLFVPLERAEPAA* |
Ga0075436_1012609102 | 3300006914 | Populus Rhizosphere | RGAARAVGAAVTCLSLASLALVSEEHRVICPHCRKEFEAELLTAQATPGPRGFKCPHCRLFVPLERAEPAA* |
Ga0079219_111202531 | 3300006954 | Agricultural Soil | MAEGHRVACPHCGKEFEPELMKSVSAQAPGGFKCPHCRLFVPADRAVP |
Ga0079219_115988622 | 3300006954 | Agricultural Soil | VSEQHRVVCPHCGKEFQAELMTSLSAPGPRGFKCPHCRLFVPADRAVEAEEPAA* |
Ga0105247_106188301 | 3300009101 | Switchgrass Rhizosphere | VCPHCGKEFEGELLASDSTAGGYKCPHCRLFVPLERAAPAA* |
Ga0105243_102467843 | 3300009148 | Miscanthus Rhizosphere | LGVVAEVRRVVCPHCGKEFEGELLAPESTSGPTGFKCPHCRLFVPLERAEPAA* |
Ga0105241_102579541 | 3300009174 | Corn Rhizosphere | VAEEHKVVCPHCGKEFEGELLASDSTAGGYKCPHCRLFV |
Ga0105241_123854882 | 3300009174 | Corn Rhizosphere | MAEAQRVVCPHCGKEFEPQLLTSVSAHAPAGFKCPHCRLFVPADRATPV |
Ga0126384_106884082 | 3300010046 | Tropical Forest Soil | LAVVAEQRVVCPHCNKEFEAELLTSAAAQSPQGFKCPHCRLFVPADRAVPVADEPAA* |
Ga0126319_16028301 | 3300010147 | Soil | EHRVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0127503_101179841 | 3300010154 | Soil | VVCPHCGKEFEGELLASDSTPGGYKCPHCRLFVPLERAGVEERD* |
Ga0134066_101593182 | 3300010364 | Grasslands Soil | RKEFAGELLESSATGGPRGYKCPHCRLFVPVERAEPAS* |
Ga0126379_107782562 | 3300010366 | Tropical Forest Soil | MAATRRVVCPHCGKEFEPELMKSVSTHAPEGFKCPHCRLFVPADRAAPVADEPAA* |
Ga0134123_116921262 | 3300010403 | Terrestrial Soil | CGKEFEGELLASDSTAGGYKCPHCRLFVPLERAEPAA* |
Ga0105246_108092312 | 3300011119 | Miscanthus Rhizosphere | MAEVHRVVCPHCRKEFEPEPMKTVSAQAPEGFKCPHCRLFVPASRAVPAADEPAA* |
Ga0137376_107446552 | 3300012208 | Vadose Zone Soil | AAGNRLSPASLGLVAEQHHVVCPHCGKEFEGELLAPESNPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0157308_103130371 | 3300012910 | Soil | RVVCPHCGKEFEPELMTSVSAHAPEGFKCPHCRLFVPADRATPVADEPAA* |
Ga0164300_111019842 | 3300012951 | Soil | VAEEHKVVCPHCGKEFEGELLASDSTPGGFKCPHCRLFVPLERAEPAA* |
Ga0164298_108877512 | 3300012955 | Soil | GRMAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVPASRAVPAADEPAA* |
Ga0164299_109040452 | 3300012958 | Soil | LALVSEEHRVVCPHCGKEFKGELIASDSASGFKCPHCRLFVPLERAEPAA* |
Ga0164302_115217991 | 3300012961 | Soil | GKEFEGELLASDSTAGGYKCPHCRLFVPLERAEPAA* |
Ga0164304_103362923 | 3300012986 | Soil | LGLVAEEHRVVCPHCGKEFEGELLAPETTPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0164306_112364782 | 3300012988 | Soil | EFEGELLASDSTAGGFKCPHCRLFVPLERAEPAA* |
Ga0164305_109967812 | 3300012989 | Soil | LGLVAEEHRVVCPHCGKEFEGELLAPEPAPGPTGFKCPHCRLFVPLERAEPAA* |
Ga0157378_116242472 | 3300013297 | Miscanthus Rhizosphere | MAEVHRVVCPHGRKEFEPELMTTVSAQAPEGFKGPHCRLFVPASRA |
Ga0173483_103305071 | 3300015077 | Soil | LGVVAEERRVVCPHCGKEFEGELLAPESTSGPTGFKCPHCRLFVPLERAEPAA* |
Ga0173480_109077471 | 3300015200 | Soil | LVSVAEGHRVVCPHCGKEFEGKPLAAQPTPGPTGYKCPHCRLFVPVERAEP |
Ga0132256_1003955743 | 3300015372 | Arabidopsis Rhizosphere | TCLSLASLALVSEEHRVICPHCRKEFEAELLTAQATPGPRGFKCPHCRLFVPLERAEPAA |
Ga0193725_10211951 | 3300019883 | Soil | VAEEHRVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA |
Ga0193727_10012098 | 3300019886 | Soil | LGLVAEEHRVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA |
Ga0193697_10040886 | 3300020005 | Soil | VCPHCGKEFEGELLAPEPTPGPTGYKCPHCRLFVPLERAEPAA |
Ga0193697_10595861 | 3300020005 | Soil | GRARREFEGELLAPEPTPGPTGYKCPHCRLFVPLERAEPAA |
Ga0193734_10143122 | 3300020015 | Soil | VSLASLTLVSEEHRVVCPHCGKEFEGELLASESAPGPRGFKCPHCRLFVPLERAEPAA |
Ga0193719_101813973 | 3300021344 | Soil | LGLVAEEHRVVCPHCGKEFEGELLAPEPTPRPTGFKCPHCRLFVPLERAEPAA |
Ga0182009_102852022 | 3300021445 | Soil | VCPHCGKEFEGELLASDSAPGPQGFKCPHCRLFVPLERAEPAA |
Ga0222621_10964252 | 3300021510 | Groundwater Sediment | VAEEHHVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPRERAEPAA |
Ga0222622_102468324 | 3300022756 | Groundwater Sediment | VAEEHHVVCPHCGKEFEGELLAPEPTPGPTGFKCP |
Ga0222622_105825431 | 3300022756 | Groundwater Sediment | VSLASLTLVSEEHRVVCPHCGKEFEGELLASESAPGPRGFKCPHCRLF |
Ga0247693_10092613 | 3300024181 | Soil | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVPASRAV |
Ga0247691_10027754 | 3300024222 | Soil | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLF |
Ga0247660_10349363 | 3300024317 | Soil | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVPASRAVPA |
Ga0207710_104320831 | 3300025900 | Switchgrass Rhizosphere | HCGKEFEGELLAEQSAPRPTGYKCPHCRLFVPLERAEPAA |
Ga0207699_101562652 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | VAEVHRVACPHCGKEFEPELMKTASAQSPVGFKCPHCRLFVPANRAVPVADEPAA |
Ga0207679_106661412 | 3300025945 | Corn Rhizosphere | HCGKEFEGELLASDSAPGPQGYKCPHCRLFVPLERAEPAA |
Ga0207667_110143291 | 3300025949 | Corn Rhizosphere | VCSHCGKEFEGELLAPHSAPGPQGYKCPHCRLFVPLERAEPAA |
Ga0207702_100605962 | 3300026078 | Corn Rhizosphere | MAEAQRVVCPHCGKEFEPQLLTSVSTHAPAGFKCPHCRLFVPADRAAPVADEPAA |
Ga0207674_107492161 | 3300026116 | Corn Rhizosphere | GKEFEGELLAEQSAPRPTGYKCPHCRLFVPLERAEPAA |
Ga0207674_116648842 | 3300026116 | Corn Rhizosphere | VSEEHHVVCPHCGKEFEGELLASDSAPGPQGFKCPHCRLFVPLERAEPAA |
Ga0247828_106396282 | 3300028587 | Soil | VAEERRVVCPHCGKEFEGKLLASEPTGAPTGFKCPHCRLFE |
Ga0247822_106110892 | 3300028592 | Soil | LDAVAEERRVVCPHCGKEFEGKLLASEPTGAPTGFKCPHCRLFVPLERAEPAA |
Ga0247821_111997812 | 3300028596 | Soil | LDAVAEERRVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA |
Ga0307295_100464694 | 3300028708 | Soil | LDPVAEEHHVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPLERAEPAA |
Ga0307311_101157032 | 3300028716 | Soil | LGLVAEEHRVVCPHCGKEFEGELLAPETTPGPTGFKCPHCRLFVPAERAS |
Ga0307307_101639382 | 3300028718 | Soil | VSKEQRVVCPHCGKEFEAEPIASDSAPGPRGFKCPHCRLFVPLERAEPAA |
Ga0307301_100257623 | 3300028719 | Soil | VAEQHRVVCPHCGKEFEAELLVASSAPGPRGFKCPHCRLFVPLDRASSPDRAEPAA |
Ga0307288_100438642 | 3300028778 | Soil | VSEEQRVVCPHCGKEFEAELIASDSAPGPRGFKCPHCRLFVPLERAEPAA |
Ga0307306_100029106 | 3300028782 | Soil | LALVSEEQRVVCPHCGKEFEAELIASDSAPGPRGFKCPHCRLFVPLERADPAA |
Ga0307284_101286202 | 3300028799 | Soil | GKEFEGELLASESAPGPRGFKCPHCRLFVPLERAEPAA |
Ga0307289_100762662 | 3300028875 | Soil | VSKEQRVVCPHCGKEFEAELIASDSAPGPRGFKCPHCRLFVPLERAEPAA |
Ga0307300_101589892 | 3300028880 | Soil | LDPVAEEHHVVCPHCGKEFEGELLAPEPTPGPTGFKCPHCRLFVPRERAEPAA |
Ga0307304_100827611 | 3300028885 | Soil | FEGELLASESAPGPRGFKCPHCRLFVPLERAEPAA |
Ga0247827_109807822 | 3300028889 | Soil | AGAAGAAGNRLSPASLDAVAEERRVVCPHCGKEFEGKLLASEPTGAPTGFKCPHCRLFVPLERAEPAA |
Ga0268241_101093451 | 3300030511 | Soil | MAQVQRVVCPHCGKEFEPQLLTSESAHAPHGFKCPHCRLFVPADRATPVADEPAA |
Ga0307498_101927542 | 3300031170 | Soil | LGLVAEEHRVVCPHCGKEFEGQLLAPEPTPGPTGFKCPHCRLFVPLERAEPAA |
Ga0310904_100241361 | 3300031854 | Soil | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVSASRAV |
Ga0310892_104001162 | 3300031858 | Soil | VAEVHRVVCPHCGKEFEPELMKTASAQSPVGFKCPHCRLFVPYERAETKQENA |
Ga0307406_107685432 | 3300031901 | Rhizosphere | MGEELHAVVCPHCGEAFDGELLPGVSVSAPSGFKCPHCRLFVPLERSVEPDEPAA |
Ga0308175_1000158162 | 3300031938 | Soil | VAEGHRVVCPHCGKKFEGELLAPESTPGPTGFKCPHCRLFVPIERAEPAA |
Ga0308176_100270555 | 3300031996 | Soil | VAEGHRVVCPHCGKKFEGELLAPESTPGPTGFKCPHCRLFVPLERAEPAA |
Ga0308176_114125591 | 3300031996 | Soil | VAEGHRVVCPHCGKKFEGELLAPESTPGPTGFKCPHCRLFV |
Ga0307414_111944052 | 3300032004 | Rhizosphere | VVCPHCGEAFDGELLPGVSVSAPSGFKCPHCRLFVPLERSVEPDEP |
Ga0247829_107040242 | 3300033550 | Soil | AGAAGNRLSPASLDAVAEERRVVCPHCGKEFEGKLLASEPTGAPTGFKCPHCRLFVPLERAEPAA |
Ga0373959_0024239_609_776 | 3300034820 | Rhizosphere Soil | MAEVHRVVCPHCRKEFEPELMKTVSAQAPEGFKCPHCRLFVPASRAVSAADEPAA |
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