Metagenome / Metatranscriptome Family F086064

Basic Information
Family ID	F086064
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	53 residues
Representative Sequence	MTRKLSFLAVLFVALITLGARTTSAQAVDARKALEAAAKAMGTTNLKSIQ
Number of Associated Samples	93
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.40 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	90.09 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (58.559 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.414 % of family members)
Environment Ontology (ENVO)	Unclassified (29.730 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.541 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 61.54% β-sheet: 0.00% Coil/Unstructured: 38.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00561	Abhydrolase_1	2.70
PF13229	Beta_helix	2.70
PF01804	Penicil_amidase	1.80
PF01436	NHL	1.80
PF01738	DLH	1.80
PF00255	GSHPx	1.80
PF13709	DUF4159	1.80
PF07883	Cupin_2	1.80
PF13365	Trypsin_2	0.90
PF01425	Amidase	0.90
PF12697	Abhydrolase_6	0.90
PF02518	HATPase_c	0.90
PF02609	Exonuc_VII_S	0.90
PF00753	Lactamase_B	0.90
PF01872	RibD_C	0.90
PF14534	DUF4440	0.90
PF07676	PD40	0.90
PF07731	Cu-oxidase_2	0.90
PF00005	ABC_tran	0.90
PF00271	Helicase_C	0.90
PF01494	FAD_binding_3	0.90
PF13620	CarboxypepD_reg	0.90
PF07859	Abhydrolase_3	0.90
PF01734	Patatin	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	1.80
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.80
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.80
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.90
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.90
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.90
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.90
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.90
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.90
COG1722	Exonuclease VII small subunit	Replication, recombination and repair [L]	0.90
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.90
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.90
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.90
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.90
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.56 %
Unclassified	root	N/A	41.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.56 %
Unclassified	root	N/A	41.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.56 %
Unclassified	root	N/A	41.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.80 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.80 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.80 %
Aromatoleum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.44 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.80 %
Aromatoleum diolicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum diolicum	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	0.90 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101857148	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300002245\|JGIcombinedJ26739_100555921	All Organisms → cellular organisms → Bacteria → Acidobacteria	1025	Open in IMG/M
3300003267\|soilL1_10024426	All Organisms → cellular organisms → Bacteria → Proteobacteria	4490	Open in IMG/M
3300003324\|soilH2_10043780	All Organisms → cellular organisms → Bacteria → Proteobacteria	3364	Open in IMG/M
3300003505\|JGIcombinedJ51221_10181689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	852	Open in IMG/M
3300003505\|JGIcombinedJ51221_10392142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300004114\|Ga0062593_102111325	Not Available	629	Open in IMG/M
3300004480\|Ga0062592_100070053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2022	Open in IMG/M
3300004779\|Ga0062380_10413040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300004782\|Ga0062382_10294740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → Aromatoleum diolicum	739	Open in IMG/M
3300005293\|Ga0065715_10869370	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005334\|Ga0068869_100362475	Not Available	1184	Open in IMG/M
3300005364\|Ga0070673_100488244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1113	Open in IMG/M
3300005364\|Ga0070673_101107743	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300005364\|Ga0070673_102367387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300005434\|Ga0070709_10409788	Not Available	1014	Open in IMG/M
3300005440\|Ga0070705_100235679	Not Available	1276	Open in IMG/M
3300005545\|Ga0070695_100460059	Not Available	977	Open in IMG/M
3300005764\|Ga0066903_106749839	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005836\|Ga0074470_10410112	Not Available	657	Open in IMG/M
3300005842\|Ga0068858_101004170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300006173\|Ga0070716_101142860	Not Available	623	Open in IMG/M
3300006176\|Ga0070765_100063447	All Organisms → cellular organisms → Bacteria → Acidobacteria	3070	Open in IMG/M
3300006176\|Ga0070765_100257738	Not Available	1601	Open in IMG/M
3300006176\|Ga0070765_100523178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1115	Open in IMG/M
3300006354\|Ga0075021_10943267	Not Available	561	Open in IMG/M
3300006358\|Ga0068871_100796702	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300006854\|Ga0075425_100783869	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300006881\|Ga0068865_102026124	Not Available	523	Open in IMG/M
3300009143\|Ga0099792_11192297	Not Available	516	Open in IMG/M
3300009176\|Ga0105242_10605052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	1059	Open in IMG/M
3300009176\|Ga0105242_11132869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300009525\|Ga0116220_10461430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300009792\|Ga0126374_11802207	Not Available	512	Open in IMG/M
3300010047\|Ga0126382_11923945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300010375\|Ga0105239_10658403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1196	Open in IMG/M
3300010379\|Ga0136449_100182251	All Organisms → cellular organisms → Bacteria	4038	Open in IMG/M
3300010397\|Ga0134124_12839378	Not Available	528	Open in IMG/M
3300010401\|Ga0134121_13114010	Not Available	511	Open in IMG/M
3300011439\|Ga0137432_1076574	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300012010\|Ga0120118_1059260	Not Available	955	Open in IMG/M
3300012207\|Ga0137381_10656235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300012208\|Ga0137376_10374405	Not Available	1237	Open in IMG/M
3300012211\|Ga0137377_10257403	Not Available	1676	Open in IMG/M
3300012683\|Ga0137398_10059825	All Organisms → cellular organisms → Bacteria → Acidobacteria	2289	Open in IMG/M
3300012683\|Ga0137398_10271305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300012685\|Ga0137397_10184334	Not Available	1550	Open in IMG/M
3300012685\|Ga0137397_11025332	Not Available	606	Open in IMG/M
3300012925\|Ga0137419_11053704	Not Available	676	Open in IMG/M
3300014326\|Ga0157380_10627907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_68_18	1068	Open in IMG/M
3300015264\|Ga0137403_11302143	Not Available	573	Open in IMG/M
3300015371\|Ga0132258_12218056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1378	Open in IMG/M
3300015373\|Ga0132257_101245865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	943	Open in IMG/M
3300015373\|Ga0132257_101858725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300015374\|Ga0132255_102115695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300015374\|Ga0132255_102411487	Not Available	803	Open in IMG/M
3300015374\|Ga0132255_104792909	Not Available	573	Open in IMG/M
3300017928\|Ga0187806_1389932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300017930\|Ga0187825_10314360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300017936\|Ga0187821_10021327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2261	Open in IMG/M
3300017936\|Ga0187821_10023516	Not Available	2156	Open in IMG/M
3300017943\|Ga0187819_10681049	Not Available	580	Open in IMG/M
3300017961\|Ga0187778_11095353	Not Available	555	Open in IMG/M
3300017993\|Ga0187823_10105546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300017994\|Ga0187822_10160552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300019866\|Ga0193756_1060126	Not Available	504	Open in IMG/M
3300020580\|Ga0210403_10513922	Not Available	972	Open in IMG/M
3300021171\|Ga0210405_10733100	Not Available	761	Open in IMG/M
3300021171\|Ga0210405_10941946	Not Available	654	Open in IMG/M
3300021178\|Ga0210408_11221769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300021180\|Ga0210396_11563713	Not Available	540	Open in IMG/M
3300021401\|Ga0210393_10829767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300021404\|Ga0210389_11243668	Not Available	572	Open in IMG/M
3300021407\|Ga0210383_11207932	Not Available	635	Open in IMG/M
3300021420\|Ga0210394_10063562	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300021420\|Ga0210394_10066863	All Organisms → cellular organisms → Bacteria	3116	Open in IMG/M
3300021474\|Ga0210390_10266002	Not Available	1452	Open in IMG/M
3300021477\|Ga0210398_10891042	Not Available	713	Open in IMG/M
3300021478\|Ga0210402_10694555	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300021478\|Ga0210402_11039009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300021559\|Ga0210409_11581734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300024330\|Ga0137417_1203942	Not Available	587	Open in IMG/M
3300025934\|Ga0207686_10474053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300026023\|Ga0207677_11599928	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300026035\|Ga0207703_11685266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300026312\|Ga0209153_1130548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300027034\|Ga0209730_1017106	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300027533\|Ga0208185_1142777	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300027869\|Ga0209579_10733998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300027898\|Ga0209067_10731972	Not Available	574	Open in IMG/M
3300027903\|Ga0209488_11189341	Not Available	514	Open in IMG/M
3300027908\|Ga0209006_10434871	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300027908\|Ga0209006_10901903	Not Available	710	Open in IMG/M
3300028047\|Ga0209526_10058165	All Organisms → cellular organisms → Bacteria → Acidobacteria	2721	Open in IMG/M
3300028047\|Ga0209526_10197831	Not Available	1393	Open in IMG/M
3300028906\|Ga0308309_11132661	Not Available	676	Open in IMG/M
3300029636\|Ga0222749_10668419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300031057\|Ga0170834_104413448	Not Available	561	Open in IMG/M
3300031226\|Ga0307497_10227878	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031231\|Ga0170824_110796664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300031525\|Ga0302326_10518326	All Organisms → cellular organisms → Bacteria → Acidobacteria	1801	Open in IMG/M
3300031708\|Ga0310686_119403038	Not Available	559	Open in IMG/M
3300031716\|Ga0310813_10147286	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300031754\|Ga0307475_10231281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1480	Open in IMG/M
3300031820\|Ga0307473_10076219	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300031823\|Ga0307478_11387005	Not Available	583	Open in IMG/M
3300031943\|Ga0310885_10630249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300032180\|Ga0307471_100773922	Not Available	1126	Open in IMG/M
3300032180\|Ga0307471_104126144	Not Available	513	Open in IMG/M
3300032205\|Ga0307472_101893796	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300032770\|Ga0335085_10946954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.18%
Host-Associated	Host-Associated	19.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.57%
Plants	Host-Associated → Plants	19.82%
Aquatic	Environmental → Aquatic	12.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.81%
Freshwater	Environmental → Aquatic → Freshwater	8.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.11%
Sediment	Environmental → Aquatic → Sediment	4.50%
Peat	Environmental → Terrestrial → Peat	0.90%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.55%
Loam	Environmental → Terrestrial → Soil → Loam	15.32%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.70%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1018571481	3300000364	Soil	MPRTLRLLTILVALGALGARTASAQAVDARKAIEAAAKAMGTMSVKSIQFVGDGYVANVG
JGIcombinedJ26739_1005559211	3300002245	Forest Soil	MTRNFWFLAVLFVALITPGARTTSAQAVDARKALEAAAKAMGTTNLKS
soilL1_100244262	3300003267	Sugarcane Root And Bulk Soil	MRRTLCCLAVLFVVLVTLGARTASAQAIDARKAIEAAAKAMGTM
soilH2_100437805	3300003324	Sugarcane Root And Bulk Soil	LAVLFVVLVTLGARTASAQAIDARKAIEAAAKAMGTMSVKSIQFVGDGYVANVGEQYNLT
JGIcombinedJ51221_101816892	3300003505	Forest Soil	MTRKVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFTADGFLSKVGEQ
JGIcombinedJ51221_103921422	3300003505	Forest Soil	MTRKVGLIAVVFAALLTLCSGTDFAQTVDARKTLEAAAKAMGTTNLKSIQFTADGFLSKVGEQYDL
Ga0062593_1021113252	3300004114	Soil	MDLTRHEEGQMTRKLWFLAVLFVALITLGARTASAQAVDARKAIEAAAKAMGTMN
Ga0062592_1000700534	3300004480	Soil	MTRKLWFLAVLFVALITLGARTASAQAVDARKAIEAAAKAMGTMN
Ga0062380_104130401	3300004779	Wetland Sediment	MTRTLWFLPALLLALTTLGASAASAQVVDARKALEAAAQAMGTTNLKSIQFTADGYLSKVGEQYDLTTDWPH
Ga0062382_102947401	3300004782	Wetland Sediment	MTRTLWFLPALLLALTTLGASAASAQVVDARKALEAAAQAMGTTNLKSIQFTADGYLSKVGEQYDLTTDW
Ga0065715_108693702	3300005293	Miscanthus Rhizosphere	MTRKLCFLAVLFVFVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSIQ
Ga0068869_1003624751	3300005334	Miscanthus Rhizosphere	MDLTRHEEGQMTRKLWFLAVLFVALITLGARTASAQAVDARKAIEAAA
Ga0070673_1004882442	3300005364	Switchgrass Rhizosphere	MRRTLCGLAVLLVVLVTLGARTASAQAVDARKAIEAAAKAMGTMNVK
Ga0070673_1011077431	3300005364	Switchgrass Rhizosphere	MTRKLCFLAVLFVFVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSIQF
Ga0070673_1023673872	3300005364	Switchgrass Rhizosphere	MTRTLRFLASVLTALTTLGTGTAFAQVVDARKALEAAAKAMGTTNLKSIRFTADGYLSKVGEQYELTT
Ga0070709_104097881	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTGKVCLIVVVFAALLTLCPGTDFAQTVDARKALEAAAKAMGTTNLKSIQF
Ga0070705_1002356791	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDLTRHEEGQMTRKLWFLAVLFVALVTLGVRTASAQAVDARKAIEAAAKAMGTMNVKSIQFV
Ga0070695_1004600591	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MTRKLWWIAVLLVALVTLGAGTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGFVANV
Ga0066903_1067498391	3300005764	Tropical Forest Soil	MMRKIWVLAVLFVALVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGYVAKV
Ga0074470_104101122	3300005836	Sediment (Intertidal)	MTRKFWLLAVLLVVVTTLGARTTSAQAVDARKALEAAAKAMGTTN
Ga0068858_1010041702	3300005842	Switchgrass Rhizosphere	MRRTRCSVAVLFVVLVTLGAGTASAQAVDARKAIEGAAKAMGTMSVKSIQFVGDGYVAKVGEQYNLTDGWP
Ga0070716_1011428601	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MARNLWFLAFLFVAFVTLGARTTSAQAVAARKALEAAAKAMGTT
Ga0070765_1000634471	3300006176	Soil	MTRKLWIFAILFVPLLTLGARTTSAQTVDARKVLEAAAKAMGTTNLKSIQFTAEGF
Ga0070765_1002577382	3300006176	Soil	MTRKLSFLAVLFVALITLGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFTAEGFLSKVGE
Ga0070765_1005231781	3300006176	Soil	MTRNLWFLAVLFVALITPGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFTAEGFLSKVGE
Ga0075021_109432671	3300006354	Watersheds	MTRNFWFLAVLFVALITPGARTTSAQAVDARKALEAAAKAMG
Ga0068871_1007967022	3300006358	Miscanthus Rhizosphere	MTRKLWLLAVLFVALVALGAGTASAQAVDAHKAIEAAAKAMGTMNVKSIQFVGDG
Ga0075425_1007838691	3300006854	Populus Rhizosphere	MTRKFWFLAVLFVALVALGARTASAQAVDARKAIEAAAKA
Ga0068865_1020261243	3300006881	Miscanthus Rhizosphere	MTRMLLFRAVLFVALTTLGAGTTSAQTVDARKAVE
Ga0099792_111922971	3300009143	Vadose Zone Soil	MTRNLWFLAVLFVALITLGARTTSAQGVDARKALE
Ga0105242_106050521	3300009176	Miscanthus Rhizosphere	MDFYTPNEEGHMTRTFWFLAVLFVGLVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSI
Ga0105242_111328692	3300009176	Miscanthus Rhizosphere	MDFTRHEEGQMTRRLWFLAVLFVALATVGARPASAQAVDARKAIESAAKAMGTMNVKSIQFVGDGYVAKVGE
Ga0116220_104614301	3300009525	Peatlands Soil	MKRNLWFLAVLFVALITPGSRTTSAQAVDARKALEAAAKAMGTTNLKSIQFTAEGFLSKVGEQYELTT
Ga0126374_118022071	3300009792	Tropical Forest Soil	MKEGQMTRNFLFLAVLFVVLVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSIQ
Ga0126382_119239451	3300010047	Tropical Forest Soil	MRRTRCFLAVRFLAVLFVVLVTLGARTASAQAVDARKAIEGAAKAMGTMNVK
Ga0105239_106584032	3300010375	Corn Rhizosphere	MRRTRCSVAVLFVVLVTLGAGTASAQAVDARKAIEGAAKAMGTMSVKSIQ
Ga0136449_1001822511	3300010379	Peatlands Soil	MTRNLRFLAVLFVAFITLGARTTSAQDVDAHKALEAAAKAMGTTNLKSIQFTADGFLSKVGEQYDLTTDWPH
Ga0134124_128393782	3300010397	Terrestrial Soil	MTRTLRFLAVLFVALVTLGAGTASAQTVDARQAIEAAARAMGTTNVKSIQFVG
Ga0134121_131140101	3300010401	Terrestrial Soil	MTRKFWFPAILFVALFTLSARIASAQAVDARKAIEAAAKA
Ga0137432_10765743	3300011439	Soil	VQFSLLPLTTLGAGTTSAQTVDARKAVEAAAKAMGTTNLKSIQFTADGYVAKVGEQYNLTDGWPQ
Ga0120118_10592602	3300012010	Permafrost	MTRNFWFLAVLFVALITPGARMTSAQAVDARKALE
Ga0137381_106562352	3300012207	Vadose Zone Soil	MRRNLCCLAVLFVVLVTLGARTASAQAVDARKAIEAAAKAMGTMNVK*
Ga0137376_103744052	3300012208	Vadose Zone Soil	MTRNLWFLAVLFVALVTPGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFT
Ga0137377_102574033	3300012211	Vadose Zone Soil	MTRNLWFLAVLFVALITPGARTTSAQAVDARKALEAAAKAM
Ga0137398_100598251	3300012683	Vadose Zone Soil	MTRNLWFLAVLFVALITLGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFTSDGF
Ga0137398_102713051	3300012683	Vadose Zone Soil	MTRNLWFLAVLFVALVTLGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFTSDGF
Ga0137397_101843342	3300012685	Vadose Zone Soil	MTRNLWFLAVLFVALVTRGARTTSAQAVDARKALEAAA
Ga0137397_110253322	3300012685	Vadose Zone Soil	MMRKLWFLALLFVALVTLGARTASAQAVDARTAIEAAAKAMGTMNVKSVQFVGDGFVANVGEQYTLTDG
Ga0137419_110537041	3300012925	Vadose Zone Soil	MTRKLWFLAILFVAVLTPGGRTTSAQAVDARKALE
Ga0157380_106279071	3300014326	Switchgrass Rhizosphere	MPRTLRLLTILVALGALGARTASAQAVDARKAIEAAAKAM
Ga0137403_113021432	3300015264	Vadose Zone Soil	MTRKLWVLAVLLVALLTLGAGTASAQAVDARKAIEAAAKAM
Ga0132258_122180563	3300015371	Arabidopsis Rhizosphere	MTRKLSFLAVLFVALVALGARTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGFVAN
Ga0132257_1012458651	3300015373	Arabidopsis Rhizosphere	MTRKLSFLAVLFVVVTLGARTASAQAVDARKAIEAVAKAMGTMNVKSIQFVGDGFVANVG
Ga0132257_1018587252	3300015373	Arabidopsis Rhizosphere	MDFTRHEEGQMTRRLWFLAVLFVALATVGARPASAQAVDARKAIESAAKAMGTMNVKSIQFVGDGYVAKVGEQYNLTDGWP
Ga0132255_1021156951	3300015374	Arabidopsis Rhizosphere	MTRNFWFPAVFFVALATLGAGTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGYVANVGEQYNLT
Ga0132255_1024114871	3300015374	Arabidopsis Rhizosphere	MRRNLCCLAVLFVVLVTLGANTSSAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGYVAKVGEQYNLTDG
Ga0132255_1047929091	3300015374	Arabidopsis Rhizosphere	MTRKLWFLAVLFVALVALGARTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDG
Ga0187806_13899322	3300017928	Freshwater Sediment	MRKLCFLAVLFVALITLGARTASAQDVDSHKALETAAKAMGTTNLKSIQFTADGFLSK
Ga0187825_103143602	3300017930	Freshwater Sediment	MTRNLWFPAVLFVALVTLGARTSSAQAVDVRKALEAAAKAMGTTNLKSIQFTADGFLAKVGEQYNLTD
Ga0187821_100213273	3300017936	Freshwater Sediment	MRNLWCFAIAFVVLITVGSRTASAQDVDARKAIEAAA
Ga0187821_100235162	3300017936	Freshwater Sediment	MTRKVCLIAVVLAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFT
Ga0187819_106810491	3300017943	Freshwater Sediment	MTRNLWFLAVLFIALITVDARTTSAQAVDARKALEAAAKAM
Ga0187778_110953531	3300017961	Tropical Peatland	MTRKLFLSILLIALTILGVRTASAQDVDARKALEAAATAMGSTN
Ga0187823_101055462	3300017993	Freshwater Sediment	MTRKVCLIAVVLAALLTLCSGSDFAQTVDARKALEAAANVIGNTNLKSIQFTADGFLSKVGEQHDLTTDW
Ga0187822_101605522	3300017994	Freshwater Sediment	MRNLWCFAIAFVVLITVGSRTASAQDVDARKAIEAAAKAMGTMNVKSIQFVGDGFVANVGEQYNLT
Ga0193756_10601261	3300019866	Soil	MTRNLWFLAVLFVALITPGARTTSAQAVEARKALEAAAKAMGTTNLK
Ga0210403_105139221	3300020580	Soil	MTRNFWFLTVLFVALITPGARTTSAQAVDARKALEAAAKAMGT
Ga0210405_107331001	3300021171	Soil	MTRNFWFLTVLFVALITPGARTTSAQAVDARKALEAAA
Ga0210405_109419461	3300021171	Soil	MTRKVWLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKA
Ga0210408_112217691	3300021178	Soil	MTRKVWLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGT
Ga0210396_115637131	3300021180	Soil	MKRKVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSI
Ga0210393_108297672	3300021401	Soil	MTRKVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFTADGC
Ga0210389_112436681	3300021404	Soil	MTRKVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFTAD
Ga0210383_112079321	3300021407	Soil	MKRNLWFLAVLFVALVTAGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFT
Ga0210394_100635621	3300021420	Soil	MTRKVGLIAVVFAALLTLCSGTDFAQTVDARKTLEAAAKAMGTTNLKSIQFTADGFLSKVGEQY
Ga0210394_100668637	3300021420	Soil	MTRKVCLITVVFATLLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFTAD
Ga0210390_102660022	3300021474	Soil	MTRKVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMG
Ga0210398_108910422	3300021477	Soil	MTRNFWFLTVLFVALITPGARTTSAQAVDARKALEA
Ga0210402_106945552	3300021478	Soil	MTRKLSFLAVLFVALITPGARTTSAQAVDARKALEAAAKAMGTTNLK
Ga0210402_110390091	3300021478	Soil	MTRNFLILAVLFVALMAPGASTTSAQAVDARKALEAAAKAMGTTNLKSIQFTAEGFLSKV
Ga0210409_115817341	3300021559	Soil	MTRNFWFPAILFVALFTLSARTASAQAVDARKAIEAAAKAMGTTNLKSIQFTGDGFVAN
Ga0137417_12039421	3300024330	Vadose Zone Soil	MTRNSWFLAVLFVALIPPGARTTSAQAVDARKALEAAALQRPWAPRT
Ga0207686_104740531	3300025934	Miscanthus Rhizosphere	MTRKLCFLAVLFVFVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGYVANVGEQYNLTD
Ga0207677_115999282	3300026023	Miscanthus Rhizosphere	MTRKLCFLAVLFVFVTLGARTASAQAVDARKAIEAAAKAMGTMNVKSIQFV
Ga0207703_116852661	3300026035	Switchgrass Rhizosphere	MRRTRCSVAVLFVVLVTLGAGTASAQAVDARKAIEGAAKAMGTMSVKSIQFVGDGYVAKVGEQYNLTDGWPQ
Ga0209153_11305482	3300026312	Soil	MRRALCYLAVLFVVLVTLGAGTASAQAVDARKAIEAAARAMGTLNVKSIQFVGDGFVANVGEQYNLTDGWPQVQVTDYTRTI
Ga0209730_10171061	3300027034	Forest Soil	MTRNVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFTADGFLSKV
Ga0208185_11427771	3300027533	Soil	MTRMLLFRAVLFVALTTLGAGTTSAQTVDARKAVEAAAKAMGTTNLKSIQFT
Ga0209579_107339981	3300027869	Surface Soil	MTRKVCLIAVVFAALLTLCSGTDFAQTVDARKALEAAAKAMGTTNLKSIQFTADGFLSKV
Ga0209067_107319721	3300027898	Watersheds	MRRNLWFLAVLFVALVTQGARTTSAQAVDARKALEAAAKAMGT
Ga0209488_111893411	3300027903	Vadose Zone Soil	MTRKLWFLTVLFVALLTLGARTTSAQAVDARKALEAAAKAMGTTNLKSIQFSAD
Ga0209006_104348711	3300027908	Forest Soil	MTRNFLILAVLFVALMAPGASTTSAQAVDARKALEAAAKAMGTTNLKSIQF
Ga0209006_109019031	3300027908	Forest Soil	MTRNFWFLAVLFVALITPGARTTSAQAVDARKALEAAAKAMGTTNLKSI
Ga0209526_100581653	3300028047	Forest Soil	MTRNFWFLAVLFVALITPGARTTSAQAVDARKALEAAAKAMGTTNLKSIQ
Ga0209526_101978311	3300028047	Forest Soil	MTRKLSFLAVLFVALITLGARTTSAQAVDARKALEAAAKAMGTTNLKSIQ
Ga0308309_111326611	3300028906	Soil	MTRNVWFPAILFVALFTLSARTASAQAVDARKAIEAAAKAMGTTNLK
Ga0222749_106684191	3300029636	Soil	MARKLWFLAVLFVALMTLGARTTSAQDVDAREALEAAAKAMGTTNLKSIQF
Ga0170834_1044134482	3300031057	Forest Soil	VTRNFWFLAFLFVALITPGARTTSAQVVDARKALEAAAKAMGTTNLKSIQ
Ga0307497_102278782	3300031226	Soil	MRRNLCCLAVLFVVLVTLGARTASAQAVDARKAIEAAAKAMGTMSVKS
Ga0170824_1107966642	3300031231	Forest Soil	MKRNLWFLAVLFVALITLGAETASAQVVDARKALEAAAKAMGTTNLKSIQFTADGFLSKVGMQYD
Ga0302326_105183261	3300031525	Palsa	MTRKLWFLSVLFVAFIAPGARTTSAQEPVDARKALEAAAKAMGTTNLKSIQFTADGFLS
Ga0310686_1194030381	3300031708	Soil	MTRNLWFLAVLFGALITPGARTTSAQAVDARKALEA
Ga0310813_101472863	3300031716	Soil	MRRKLGCLAVLFVVLVTLGARTASAQAVDARKAIEAAAKAMGTMSVKSIQFV
Ga0307475_102312812	3300031754	Hardwood Forest Soil	MTRKVCLIAVVFAALLTLCSGTDFAQTVDARKVLEAAAKAMGTTNLKSIQFTADG
Ga0307473_100762192	3300031820	Hardwood Forest Soil	MTRHFWFLAVLFVALVALGARTASAQAVDARKAIEAAAKAM
Ga0307478_113870052	3300031823	Hardwood Forest Soil	MTRNFWFLVVLFVALITPGARTTSAQAGDARKVLEAAAKAMGTTNLKSI
Ga0310885_106302491	3300031943	Soil	MTRKIWFLAVLFAALITLGAGTTSAQTVDARKAVEAAAKAMGTTNLKSIQFTADGYVARVGE
Ga0307471_1007739223	3300032180	Hardwood Forest Soil	MTRHFWFLAVLFVALVALGARTASAQAVDARKAIEAAAKAMGTMNVKSIQFVGDGY
Ga0307471_1041261441	3300032180	Hardwood Forest Soil	MTRNFWFLAVLFVALIPPGARTTSAQAVDARKAVEAAAKA
Ga0307472_1018937962	3300032205	Hardwood Forest Soil	MRRALCCLAVLFVVLVTLGARTASAQAVDARQAIEAAARAIGTMNVKSIQFVGDGYVANVGEQYN
Ga0335085_109469543	3300032770	Soil	MTRKLSCLAVLFVALVTLGARRASAQAVDARQAIEAAAKAMGTMNVKSIQFVGDGYV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086064

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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