Metagenome Family F086027

Basic Information
Family ID	F086027
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	43 residues
Representative Sequence	VVANINEDVMGPMRADFERVARKRILSGFQDEQGEWTCVVL
Number of Associated Samples	100
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.20 %
% of genes from short scaffolds (< 2000 bps)	93.69 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Bacteria (90.991 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.910 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (36.937 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.29% β-sheet: 15.94% Coil/Unstructured: 63.77%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF08482	HrpB_C	37.84
PF01904	DUF72	22.52
PF01019	G_glu_transpept	2.70
PF01402	RHH_1	1.80
PF12796	Ank_2	1.80
PF13620	CarboxypepD_reg	1.80
PF02653	BPD_transp_2	0.90
PF04185	Phosphoesterase	0.90
PF02687	FtsX	0.90
PF01255	Prenyltransf	0.90
PF13751	DDE_Tnp_1_6	0.90
PF13673	Acetyltransf_10	0.90
PF12543	DUF3738	0.90
PF03447	NAD_binding_3	0.90
PF04069	OpuAC	0.90
PF05168	HEPN	0.90
PF09364	XFP_N	0.90
PF01522	Polysacc_deac_1	0.90
PF01050	MannoseP_isomer	0.90
PF13637	Ank_4	0.90
PF00196	GerE	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1643	HrpA-like RNA helicase	Translation, ribosomal structure and biogenesis [J]	37.84
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	22.52
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	2.70
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.90
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.90
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.90
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.99 %
Unclassified	root	N/A	9.01 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.99 %
Unclassified	root	N/A	9.01 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.99 %
Unclassified	root	N/A	9.01 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.56 %
Unclassified	root	N/A	9.01 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	20.72 %
Unclassified	root	N/A	9.01 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.70 %
Holophagae	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	14.41 %
Unclassified	root	N/A	9.01 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.60 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.90 %
unclassified Holophagae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	14.41 %
Unclassified	root	N/A	9.01 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	2.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	14.41 %
Unclassified	root	N/A	9.01 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	2.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia bacterium 12-62-4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	14.41 %
Unclassified	root	N/A	9.01 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	2.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.70 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %
Holophagae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459014\|G1P06HT02JDRCV	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
2170459017\|G14TP7Y01BOGD1	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300001213\|JGIcombinedJ13530_102637217	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300004092\|Ga0062389_101255444	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300005340\|Ga0070689_100206474	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300005340\|Ga0070689_100274009	All Organisms → cellular organisms → Bacteria → Acidobacteria	1398	Open in IMG/M
3300005439\|Ga0070711_101115523	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300005444\|Ga0070694_100120193	All Organisms → cellular organisms → Bacteria	1884	Open in IMG/M
3300005468\|Ga0070707_101850869	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300005535\|Ga0070684_100251575	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300005541\|Ga0070733_10640994	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	713	Open in IMG/M
3300005578\|Ga0068854_100904824	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005602\|Ga0070762_11109478	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005616\|Ga0068852_100264421	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1653	Open in IMG/M
3300005616\|Ga0068852_100783128	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300005836\|Ga0074470_11351120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	659	Open in IMG/M
3300005841\|Ga0068863_100451784	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	1261	Open in IMG/M
3300006057\|Ga0075026_100294992	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300006059\|Ga0075017_100842093	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300006174\|Ga0075014_100419790	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300006755\|Ga0079222_12096497	Not Available	559	Open in IMG/M
3300006893\|Ga0073928_11109825	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009093\|Ga0105240_11169679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	816	Open in IMG/M
3300009098\|Ga0105245_11017835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	873	Open in IMG/M
3300009098\|Ga0105245_12648025	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300009162\|Ga0075423_12963929	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300009174\|Ga0105241_10322388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1333	Open in IMG/M
3300009174\|Ga0105241_10770172	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300009174\|Ga0105241_12039656	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300009176\|Ga0105242_12893187	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300009177\|Ga0105248_13150018	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	525	Open in IMG/M
3300009545\|Ga0105237_10185800	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300009545\|Ga0105237_10247894	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1783	Open in IMG/M
3300009551\|Ga0105238_10103185	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2833	Open in IMG/M
3300009553\|Ga0105249_12301229	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300009700\|Ga0116217_10360204	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	927	Open in IMG/M
3300010366\|Ga0126379_11658088	Not Available	744	Open in IMG/M
3300010373\|Ga0134128_11490294	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	745	Open in IMG/M
3300010375\|Ga0105239_11211801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	870	Open in IMG/M
3300010376\|Ga0126381_100032349	All Organisms → cellular organisms → Bacteria → Acidobacteria	6251	Open in IMG/M
3300010379\|Ga0136449_100319704	All Organisms → cellular organisms → Bacteria	2814	Open in IMG/M
3300010398\|Ga0126383_11288501	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300011119\|Ga0105246_11896003	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300012200\|Ga0137382_10961048	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012683\|Ga0137398_11036837	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300012917\|Ga0137395_11237677	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300013296\|Ga0157374_11308355	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300013297\|Ga0157378_11444283	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300014325\|Ga0163163_10164594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2264	Open in IMG/M
3300014489\|Ga0182018_10438189	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300014657\|Ga0181522_10930592	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300014969\|Ga0157376_12435048	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	563	Open in IMG/M
3300017822\|Ga0187802_10159539	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300017955\|Ga0187817_10907153	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300017975\|Ga0187782_10798244	Not Available	730	Open in IMG/M
3300018033\|Ga0187867_10623472	Not Available	589	Open in IMG/M
3300018037\|Ga0187883_10333255	Not Available	775	Open in IMG/M
3300018089\|Ga0187774_11447644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	506	Open in IMG/M
3300019786\|Ga0182025_1360288	All Organisms → cellular organisms → Bacteria → Acidobacteria	1376	Open in IMG/M
3300020580\|Ga0210403_10723993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	796	Open in IMG/M
3300020581\|Ga0210399_10544878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	962	Open in IMG/M
3300020581\|Ga0210399_10819979	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300020583\|Ga0210401_10702727	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300021168\|Ga0210406_10426365	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	1059	Open in IMG/M
3300021181\|Ga0210388_11373548	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300021432\|Ga0210384_10753671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	870	Open in IMG/M
3300021432\|Ga0210384_10754684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	869	Open in IMG/M
3300021474\|Ga0210390_11561393	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300021560\|Ga0126371_13526605	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300022213\|Ga0224500_10179483	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300023270\|Ga0247784_1108570	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300025920\|Ga0207649_10655700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	811	Open in IMG/M
3300025922\|Ga0207646_10490773	All Organisms → cellular organisms → Bacteria → Acidobacteria	1107	Open in IMG/M
3300025927\|Ga0207687_10609817	All Organisms → cellular organisms → Bacteria → Acidobacteria	920	Open in IMG/M
3300025927\|Ga0207687_10684239	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	869	Open in IMG/M
3300025934\|Ga0207686_10017264	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4065	Open in IMG/M
3300026035\|Ga0207703_10167642	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300026088\|Ga0207641_10423364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	1282	Open in IMG/M
3300026116\|Ga0207674_12289119	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300027641\|Ga0208827_1115844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium 12-62-4	778	Open in IMG/M
3300027674\|Ga0209118_1164221	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300027869\|Ga0209579_10393436	Not Available	751	Open in IMG/M
3300027879\|Ga0209169_10282953	Not Available	870	Open in IMG/M
3300027879\|Ga0209169_10312389	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300027889\|Ga0209380_10306683	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300027889\|Ga0209380_10647450	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300027986\|Ga0209168_10461356	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300028381\|Ga0268264_10657437	All Organisms → cellular organisms → Bacteria → Acidobacteria	1038	Open in IMG/M
3300029923\|Ga0311347_10555781	Not Available	698	Open in IMG/M
3300029951\|Ga0311371_11218174	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300030020\|Ga0311344_11355365	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300030503\|Ga0311370_11001224	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300031236\|Ga0302324_101069656	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300031249\|Ga0265339_10415745	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300031474\|Ga0170818_111043923	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300031525\|Ga0302326_12930009	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300031595\|Ga0265313_10383593	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300031708\|Ga0310686_115399555	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300031715\|Ga0307476_11242054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300031740\|Ga0307468_101672398	Not Available	598	Open in IMG/M
3300031947\|Ga0310909_11293966	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300031954\|Ga0306926_10896609	All Organisms → cellular organisms → Bacteria → Acidobacteria	1062	Open in IMG/M
3300032001\|Ga0306922_11686434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300032060\|Ga0318505_10392740	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300032160\|Ga0311301_10419044	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300032205\|Ga0307472_102078523	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300032515\|Ga0348332_12371996	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300032783\|Ga0335079_11330064	Not Available	716	Open in IMG/M
3300032955\|Ga0335076_10761915	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300033158\|Ga0335077_11938655	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300033475\|Ga0310811_11274734	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.47%
Host-Associated	Host-Associated	29.73%
Engineered	Engineered	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.76%
Plants	Host-Associated → Plants	29.73%
Aquatic	Environmental → Aquatic	11.71%
Solid Waste	Engineered → Solid Waste	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.21%
Freshwater	Environmental → Aquatic → Freshwater	5.41%
Peat	Environmental → Terrestrial → Peat	5.41%
Sediment	Environmental → Aquatic → Sediment	3.60%
Marine	Environmental → Aquatic → Marine	1.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.80%
Grass	Engineered → Solid Waste → Grass	1.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.90%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.92%
Loam	Environmental → Terrestrial → Soil → Loam	11.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.80%
Composting	Engineered → Solid Waste → Grass → Composting	1.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.90%
Sediment	Environmental → Aquatic → Marine → Sediment	0.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.80%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.80%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.90%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.90%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.21%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.60%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.80%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.90%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.90%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.90%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.90%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.90%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2PV_02683410	2170459014	Switchgrass, Maize And Mischanthus Litter	AVATNAFDVVVANISEIVIGDLKPEFERVAPRRILSGFQDAAGEWTCVVE
4ZMR_03057340	2170459017	Switchgrass, Maize And Mischanthus Litter	NINEDVMGSMGADLERVARTRILSGFQDDAGEWTCVVI
JGIcombinedJ13530_1026372173	3300001213	Wetland	NISEDVIGDMYPDFERVAKVRILSGFQDESGEWTCVIR*
Ga0062389_1012554441	3300004092	Bog Forest Soil	RSGAFDVVVANINEDVVGELRPEFERVARVRILSGFQDEAGEWCCVVG*
Ga0070689_1002064744	3300005340	Switchgrass Rhizosphere	INEDVIGCMLPDFERVARVRILSGFQDDKGEWTYVVRGSH*
Ga0070689_1002740091	3300005340	Switchgrass Rhizosphere	VVVANINEDVMGPMLPDFVRVARKRILSGFQGDAGDWTCVIL*
Ga0070711_1011155231	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GAFDVVVANISEVVIGDLKAEFERVAPRRILSGFQDARGEWTCVTR*
Ga0070694_1001201931	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	NSFDIVVANINEEVLDGPLRAELERVAPKRILSGFQDEHGDWTCVVA*
Ga0070707_1018508692	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AVATDAFDVVVANISEIVIGDLKPEFERVAPRRILSGFQDAAGEWTCVVE*
Ga0070684_1002515752	3300005535	Corn Rhizosphere	SGAFDVVVANINEDVMGSMRGDFERVARIRILSGFQNDDGEWDCVVI*
Ga0070733_106409941	3300005541	Surface Soil	NEDVVGSMRADFERVAPVRILSGFQDDDGEWTCVVI*
Ga0068854_1009048241	3300005578	Corn Rhizosphere	SVDAVRSGAFDVVVANISEVVIGDLKAEFERVAPRRILSGFQDERGEWTCVVA*
Ga0070762_111094781	3300005602	Soil	FDIVVANISDEVLGSLRADFERVARRRILSGFQDEAGEWACVVR*
Ga0068852_1002644211	3300005616	Corn Rhizosphere	FDVVVANISEVVIGDLKAEFERVAPRRILSGFQDARGEWTCVTR*
Ga0068852_1007831282	3300005616	Corn Rhizosphere	VVANINENVIGPMRADFERVARVRILSGFQNDDGEWTCMIL*
Ga0074470_113511202	3300005836	Sediment (Intertidal)	ANISEDVMGPMRGDLERVARKRILSGFQDDDGEWTCVVL*
Ga0068863_1004517842	3300005841	Switchgrass Rhizosphere	ISEIVIGDLKPEFERVAPRRILSGFQDAAGEWTCVVE*
Ga0075026_1002949921	3300006057	Watersheds	GAFDVVVANISEIVMGELKPELERVAPRRILSGFQDDRGEWTCVVTP*
Ga0075017_1008420931	3300006059	Watersheds	FDVVVANISEVVLGDLKAEFERVAPRRILSGFQDARGEWTCVTR*
Ga0075014_1004197901	3300006174	Watersheds	ANISEVVIGELKAEFERVAPRRILSGFQDDMGEWACITL*
Ga0079222_120964972	3300006755	Agricultural Soil	DVIGWMRPDFERVARTRILSGFRDHHGNWTCLVC*
Ga0073928_111098252	3300006893	Iron-Sulfur Acid Spring	AVRDHAFDVVVSNIGEEVLGRLRPDLERVAPRRILSGFQNEAGEWACLIL*
Ga0105240_111696792	3300009093	Corn Rhizosphere	VVVANINENVIGPMRADFERVARVRILSGFQNDDGEWTCMIL*
Ga0105245_110178352	3300009098	Miscanthus Rhizosphere	GAFDVVVANINEDVMGSMRADLERVARRRILSGFQDGDGEWTCVVI*
Ga0105245_126480252	3300009098	Miscanthus Rhizosphere	DVMGSMRADFERVARTRILSGFQDDDGEWTCVIL*
Ga0075423_129639291	3300009162	Populus Rhizosphere	NINEDVMGSMRADLERVARTRILSGFQDDAGDWTCVIL*
Ga0105241_103223881	3300009174	Corn Rhizosphere	IVIGELKADFERVAPRRILSGFQDIRGEWTCVTL*
Ga0105241_107701721	3300009174	Corn Rhizosphere	DAFDVVVANINEDVMGPMLPDFVRVARKRILSGFQGDAGDWTCVIL*
Ga0105241_120396561	3300009174	Corn Rhizosphere	SEIVIGDLKPEFDRVAPKRILSGFQDAAGEWTCVVD*
Ga0105242_128931871	3300009176	Miscanthus Rhizosphere	NTFDLVVANINEDVVGSMRADFERVAPKRILSGFQDDDNEWTCVVI*
Ga0105248_131500181	3300009177	Switchgrass Rhizosphere	RSFDIVVANINEEVLDGPLRAELERVAKKRILSGFRDDNGEWTCVVA*
Ga0105237_101858002	3300009545	Corn Rhizosphere	FDVVVANINEDVVGSMRADFERVARVRILSGFQNDDGEWTCVTI*
Ga0105237_102478941	3300009545	Corn Rhizosphere	VANISEVVIGDLKAEFERVAPRRILSGFQDARGEWTCVTR*
Ga0105238_101031851	3300009551	Corn Rhizosphere	NEDVVGCMRPDFERVARKRILSGFQDDDGQWTCVTL*
Ga0105249_123012292	3300009553	Switchgrass Rhizosphere	DAVRSGSFDVVVANINEDVIGSMRPDFERVAQRRILSGFQDDTGDWTCVIL*
Ga0116217_103602042	3300009700	Peatlands Soil	VVANINETVIEDLRAEFERVAPRRILSGFQDDSGNWTCLVC*
Ga0126379_116580881	3300010366	Tropical Forest Soil	VANISEDVLGPLRPDLERVARTRILSGFQDESGKWACVVV*
Ga0134128_114902942	3300010373	Terrestrial Soil	DVVVANINEDVIGPMRADFERVARLRILSGFQNDDGEWTCVTL*
Ga0105239_112118011	3300010375	Corn Rhizosphere	VVANINEDVMGSMRADFERVARTRILSGFQDDDGEWTCVIL*
Ga0126381_1000323494	3300010376	Tropical Forest Soil	DAVRSGSFDVVVANINEDVIGDMRLDLERVAAVRILSGFQNESGEWTCVIT*
Ga0136449_1003197041	3300010379	Peatlands Soil	NEDVMGSMRADFERVARVRILSGFQDDDGEWTCLVI*
Ga0126383_112885012	3300010398	Tropical Forest Soil	DVVVANINEDVTGSMHPDFVRVARRRILSGFQDDNGKWTRVVE*
Ga0105246_118960031	3300011119	Miscanthus Rhizosphere	NINEDVMGPMRADFERVARKCILSGFQDEQGEWTCVVL*
Ga0137382_109610482	3300012200	Vadose Zone Soil	FDLVVANISEIVMGELKLELERVAPRRILSGFQDHRGEWTCVVE*
Ga0137398_110368372	3300012683	Vadose Zone Soil	VVVANISEIVMGELKPELERVAPRRILSGFHDHRGEWTCVVE*
Ga0137395_112376772	3300012917	Vadose Zone Soil	VVANISEIVIGYLKPEFDRIAPRRILSGFQDAEGDWTCVVE*
Ga0157374_113083552	3300013296	Miscanthus Rhizosphere	GSNTFDVVVANINEDVVGSMRADFERVAPKRILSGFQDEDGDWTCVLI*
Ga0157378_114442831	3300013297	Miscanthus Rhizosphere	SEIVMGNLKPELERVAPRRILSGFQDASGEWTCVVE*
Ga0163163_101645943	3300014325	Switchgrass Rhizosphere	FDVVIANISEDVIGSMRPDFERVGRKRILSGFRDDAGEWTCVIL*
Ga0182018_104381892	3300014489	Palsa	FDVVVANINEDVIGALRPEFERVARKRILSGFQDETGEWACVEL*
Ga0181522_109305922	3300014657	Bog	VVANISEAVIEDLRPEFVRVARRRILSGFQDDRGEWTCVVE*
Ga0157376_124350482	3300014969	Miscanthus Rhizosphere	VVANINEDVMGPMRADFERVARKRILSGFQDEQGEWTCVVL*
Ga0187802_101595393	3300017822	Freshwater Sediment	INEDVIGVLRPEFERVARRRILSGFQDEDGEWTCVEC
Ga0187817_109071532	3300017955	Freshwater Sediment	DVVVANINESVIEDLREEFTRVAKRKILSGFQDDDGRWTCVCE
Ga0187782_107982441	3300017975	Tropical Peatland	NINEDELGSLRSELERVARTRILSGFQDERGEWACVVL
Ga0187867_106234721	3300018033	Peatland	ISEIVIGALRLEFERVARKRILSGFQDQQGQWTCLSSET
Ga0187883_103332551	3300018037	Peatland	EAVVEDLREEFERVAPVRILSGFQDDLGEWTCVVS
Ga0187774_114476441	3300018089	Tropical Peatland	AGAFDLVVANISDAVIGELKPEFDRAAPRRILSGFQNEQGDWACVVEED
Ga0182025_13602881	3300019786	Permafrost	GEEVLGRLRPDLERVARRRILSGFQDESGEWACVIL
Ga0210403_107239932	3300020580	Soil	AVRSGTFDVVVANINEDVMGPMRADFERVARTRILSGFQDDAGEWTCIVL
Ga0210399_105448782	3300020581	Soil	AFDVVVANINEEVIGKMRPDFERVAKHQILSGFQDEEGEWTCFAR
Ga0210399_108199792	3300020581	Soil	VDAVRSGTFDVVVANINEDVMGPMRADFERVARTRILSGFQDDAGEWTCIVL
Ga0210401_107027271	3300020583	Soil	AVRTGSFDVVVANINESVIEDLRPDLERVAARRILSGFQDAHGEWTCVISGT
Ga0210406_104263651	3300021168	Soil	VANINEDVMGSMRADFERVARKRILSGFQNDAGEWDCVVI
Ga0210388_113735481	3300021181	Soil	IVVANISDEVLGSLRADFERVARRRILSGFQDEAGEWACVVR
Ga0210384_107536712	3300021432	Soil	EDVIGRMRPDFERVARRRILSGFQDDEGEWTCAVC
Ga0210384_107546842	3300021432	Soil	INEDVIGPMLPEFERVARRRILSGFQDERGEWTCVVS
Ga0210390_115613931	3300021474	Soil	DAVRDNSFDVVVANINEDVIGAMRPDLERVAKRRILSGFQDGEGEWTCIVC
Ga0126371_135266051	3300021560	Tropical Forest Soil	PFDVVVANISEDVLGSLRPDLERVAQTRILSGFQNESGEWTCIVV
Ga0224500_101794833	3300022213	Sediment	NAFDVVVANISEEVVGHMLPDFQRVAKTRILSGFQDENGEWTAQVW
Ga0247784_11085702	3300023270	Plant Litter	ANINEDVIGSMLPDFERVAKTRILSGFQDDHGEWTCVIR
Ga0207649_106557001	3300025920	Corn Rhizosphere	DDGAFDVVVANINEDVIGPMRADFERVARLRILSGFQNDDGEWTCVTL
Ga0207646_104907732	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	DAVRSDTFDLVVANINEDVIGSMRADFERVAPKRILSGFQDDDNEWTCVVL
Ga0207687_106098171	3300025927	Miscanthus Rhizosphere	NVVVANISEIVMGNLKPELERVAPRRILSGFQDASGEWTCVVE
Ga0207687_106842392	3300025927	Miscanthus Rhizosphere	FDVVVANINEDVMGSMRADLERVARRRILSGFQDGDGEWTCVVI
Ga0207686_100172643	3300025934	Miscanthus Rhizosphere	DAVRSNSFDIVVANISEDVIGEMLPDFERVAQVRILSGFQDDQGEWTCIVR
Ga0207703_101676421	3300026035	Switchgrass Rhizosphere	EDVIGSMRADFERVARVRILSGFQNDDGEWTCVTI
Ga0207641_104233641	3300026088	Switchgrass Rhizosphere	VVGANIREIVIGDLKPEFERVAPRRILSGFQDAAGEWTCVVE
Ga0207674_122891192	3300026116	Corn Rhizosphere	VVVANINEDVIGSMRADFERVARVRILSGFQNDDGEWTCVTI
Ga0208827_11158441	3300027641	Peatlands Soil	NEDVIGPLRAEFERVARTRILSGFQDEHGEWACVTL
Ga0209118_11642211	3300027674	Forest Soil	VVANISEAVMGEMRAELERVASKRILSGFQDERGEWACVVC
Ga0209579_103934361	3300027869	Surface Soil	INESVIEGLHPEFVRVARRRILSGFRDDRGEWACIVE
Ga0209169_102829532	3300027879	Soil	ANINEDVIGEMRADFERVAQRRILSGFQDERGEWTCVCL
Ga0209169_103123892	3300027879	Soil	VVANINESVIEDLREEFTRVARRQILSGFQDESGAWTCVLAANEGE
Ga0209380_103066831	3300027889	Soil	VANINEDVIGAMRPDLERVATRRILSGFQDEEGNWTCVVY
Ga0209380_106474502	3300027889	Soil	DAVRDDAFDIVVANISDEVLGSLRADFERVARRRILSGFQDEAGEWACVVR
Ga0209168_104613562	3300027986	Surface Soil	VRSGGFDVVVANISEVVIGELKAEFERVAPRRILSGFQDARGEWTCVTR
Ga0268264_106574371	3300028381	Switchgrass Rhizosphere	AVRSNTFDLVVANINEDVVGSMRADFERVAPKRILSGFQDDDNEWTCVVI
Ga0311347_105557811	3300029923	Fen	ANISEAVIEDLHPEFVRVARRRILSGFQDANGAWTCVVE
Ga0311371_112181741	3300029951	Palsa	VRDNSFDVVVANINEEVIGAMRPDFERVAKHRILSGFQNEEGEWTCIVC
Ga0311344_113553652	3300030020	Bog	AAFDVVVANISEAVMEDLHPEFVRVARRRILSGFQDANGEWTCVVE
Ga0311370_110012241	3300030503	Palsa	DAVRDNSFDVVVANINEEVIGVMRPDFERVAKHRILSGFQNEEGEWTCIVC
Ga0302324_1010696561	3300031236	Palsa	SNIGEEVLGRVRPDLERVARRRILSGFQDESGDWACVIL
Ga0265339_104157452	3300031249	Rhizosphere	VGAVRSGAFDVVVANINEDVIGSMRPDFERVARVRILSGFQDDDGEWTCVIA
Ga0170818_1110439231	3300031474	Forest Soil	RSATFDVVVANINEDVVGCMLADFERVAPKRILSGFQNDDGDWTCVVI
Ga0302326_129300092	3300031525	Palsa	DAVRSNSFDVVVANINEEVIGRMRPDFDRVARHRILSGFQNEDGEWTCLVC
Ga0265313_103835932	3300031595	Rhizosphere	GVFDIVVANISEVVVGDLKFEFERVAPRRILSGFQDARGEWTCVTT
Ga0310686_1153995553	3300031708	Soil	VVVANISEIVIGDLKAEFERVAPRRILSGFQDARGEWTCVTT
Ga0307476_112420542	3300031715	Hardwood Forest Soil	NINEDVIGKLRPEFERVARRRILSGFQDENGEWACVEL
Ga0307468_1016723981	3300031740	Hardwood Forest Soil	VVANINEEVLDGPLRAELERVAKKRILSGFRDDAGDWTCVVA
Ga0310909_112939662	3300031947	Soil	AVRSGAFDVVVANISEDVIGPMRPEFERVARRRVLSGFQDKDGQWACVVL
Ga0306926_108966091	3300031954	Soil	VDAVRSGAFDVVVANINEDVIGSMRPDFERVAKRRILSGFQDKCGEWTCAVL
Ga0306922_116864341	3300032001	Soil	VANINEDVIGPMKHDFERVATHQILSGFQDTDGEWTIFCSFSAS
Ga0318505_103927402	3300032060	Soil	VRSGAFDVVVANISEDVLGPLRPDLERVARKRILSGFQNESGDWSCVVL
Ga0311301_104190442	3300032160	Peatlands Soil	NEDVMGSMRADFERVARVRILSGFQDDDGEWTCLVI
Ga0307472_1020785231	3300032205	Hardwood Forest Soil	AVRSRAFDVVVANISEVVIGELKAEFERVARRRILSGFQDARGEWTCVTR
Ga0348332_123719962	3300032515	Plant Litter	SGSFDVVVANISEDVIGPMRFDLERVAARRILSGFQNEDGEWTCVVC
Ga0335079_113300642	3300032783	Soil	EDVIGDLRPEFERVARTRILSGFQDERGEWACVVSEG
Ga0335076_107619152	3300032955	Soil	SVDAVRSGAFDVVVANINEDVVGDLRPEFERVARVRILSGFQDEDGEWTCVVV
Ga0335077_119386551	3300033158	Soil	VRSGAFDVVVANINEDVVGDLGPEFERVARVGILSGFQDEDGEWTCVVV
Ga0310811_112747342	3300033475	Soil	AVRSGAFDVVVANISEVVIGDLKAEFERVAPRRILSGFQDERGEWTCVVA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086027

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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