Metagenome / Metatranscriptome Family F085918

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085918
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	42 residues
Representative Sequence	HSMIAMEHWDAAHFREQDAHSKATEAREAYKDALRAVNYGI
Number of Associated Samples	93
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.70 %
% of genes near scaffold ends (potentially truncated)	81.08 %
% of genes from short scaffolds (< 2000 bps)	89.19 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.568 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (15.315 % of family members)
Environment Ontology (ENVO)	Unclassified (41.441 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.955 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.62% β-sheet: 0.00% Coil/Unstructured: 46.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01384	PHO4	4.50
PF00171	Aldedh	3.60
PF00005	ABC_tran	2.70
PF03625	DUF302	2.70
PF00155	Aminotran_1_2	2.70
PF00491	Arginase	1.80
PF01966	HD	1.80
PF13620	CarboxypepD_reg	1.80
PF09656	PGPGW	1.80
PF00437	T2SSE	1.80
PF04366	Ysc84	1.80
PF01380	SIS	1.80
PF08668	HDOD	0.90
PF00128	Alpha-amylase	0.90
PF02656	DUF202	0.90
PF00871	Acetate_kinase	0.90
PF13508	Acetyltransf_7	0.90
PF00685	Sulfotransfer_1	0.90
PF02518	HATPase_c	0.90
PF12838	Fer4_7	0.90
PF10431	ClpB_D2-small	0.90
PF08530	PepX_C	0.90
PF00723	Glyco_hydro_15	0.90
PF04185	Phosphoesterase	0.90
PF06662	C5-epim_C	0.90
PF03544	TonB_C	0.90
PF13565	HTH_32	0.90
PF13180	PDZ_2	0.90
PF01451	LMWPc	0.90
PF11138	DUF2911	0.90
PF03050	DDE_Tnp_IS66	0.90
PF00571	CBS	0.90
PF05016	ParE_toxin	0.90
PF00196	GerE	0.90
PF00873	ACR_tran	0.90
PF00582	Usp	0.90
PF01557	FAA_hydrolase	0.90
PF00106	adh_short	0.90
PF01882	DUF58	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	4.50
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	3.60
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	3.60
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	3.60
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	2.70
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	1.80
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	1.80
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.90
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.90
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0282	Acetate kinase	Energy production and conversion [C]	0.90
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.90
COG1721	Uncharacterized conserved protein, DUF58 family, contains vWF domain	Function unknown [S]	0.90
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.90
COG2936	Predicted acyl esterase	General function prediction only [R]	0.90
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.90
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.90
COG3426	Butyrate kinase	Energy production and conversion [C]	0.90
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.90
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.57 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.57 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.57 %
Unclassified	root	N/A	32.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.60 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.80 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.31 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.90 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.90 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.91 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	0.90 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.90 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.90 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.90 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.90 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.90 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.91 %
Edaphobacter dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter dinghuensis	0.90 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.90 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.90 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.90 %
Methylocystis parvus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis parvus	0.90 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.90 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.91 %
Mesorhizobium sp. LNHC220B00	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNHC220B00	0.90 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	0.90 %
Edaphobacter dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter dinghuensis	0.90 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.90 %
Methylocystis parvus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis parvus	0.90 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.90 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100021810	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5523	Open in IMG/M
3300002245\|JGIcombinedJ26739_100986049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300003350\|JGI26347J50199_1030800	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300004080\|Ga0062385_10133231	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1258	Open in IMG/M
3300004080\|Ga0062385_10184273	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300004082\|Ga0062384_100182071	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300004082\|Ga0062384_100355896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	929	Open in IMG/M
3300004091\|Ga0062387_100641772	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300004091\|Ga0062387_100889780	Not Available	672	Open in IMG/M
3300004092\|Ga0062389_100327383	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1615	Open in IMG/M
3300004092\|Ga0062389_101990591	Not Available	758	Open in IMG/M
3300004635\|Ga0062388_100764118	Not Available	911	Open in IMG/M
3300005538\|Ga0070731_10325648	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300005591\|Ga0070761_10946600	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005602\|Ga0070762_10593597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300005712\|Ga0070764_10063125	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1919	Open in IMG/M
3300005764\|Ga0066903_100276027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2629	Open in IMG/M
3300006162\|Ga0075030_100129677	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2047	Open in IMG/M
3300006176\|Ga0070765_101742579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis parvus	585	Open in IMG/M
3300009623\|Ga0116133_1073468	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300009623\|Ga0116133_1074680	Not Available	848	Open in IMG/M
3300009638\|Ga0116113_1020375	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300009759\|Ga0116101_1041555	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300010046\|Ga0126384_10969042	Not Available	772	Open in IMG/M
3300010339\|Ga0074046_10903440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300010343\|Ga0074044_10571840	Not Available	738	Open in IMG/M
3300010360\|Ga0126372_12748936	Not Available	544	Open in IMG/M
3300011110\|Ga0138578_1113732	Not Available	513	Open in IMG/M
3300011120\|Ga0150983_12732737	Not Available	1616	Open in IMG/M
3300011120\|Ga0150983_15485985	Not Available	609	Open in IMG/M
3300014152\|Ga0181533_1110311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. LNHC220B00	1202	Open in IMG/M
3300014155\|Ga0181524_10030117	All Organisms → cellular organisms → Bacteria → Acidobacteria	3768	Open in IMG/M
3300014155\|Ga0181524_10417204	Not Available	583	Open in IMG/M
3300014159\|Ga0181530_10644126	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300014168\|Ga0181534_10467396	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300014169\|Ga0181531_10409767	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	833	Open in IMG/M
3300014200\|Ga0181526_10171927	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300014200\|Ga0181526_10635910	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300014489\|Ga0182018_10641513	Not Available	556	Open in IMG/M
3300016294\|Ga0182041_10419292	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300016357\|Ga0182032_11860686	Not Available	527	Open in IMG/M
3300017931\|Ga0187877_1421047	Not Available	503	Open in IMG/M
3300017935\|Ga0187848_10186701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300017946\|Ga0187879_10256801	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300017946\|Ga0187879_10786845	Not Available	531	Open in IMG/M
3300017948\|Ga0187847_10005907	All Organisms → cellular organisms → Bacteria	8700	Open in IMG/M
3300017948\|Ga0187847_10022107	All Organisms → cellular organisms → Bacteria	3909	Open in IMG/M
3300017948\|Ga0187847_10427189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300017970\|Ga0187783_10067830	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300017970\|Ga0187783_10608133	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300017975\|Ga0187782_10932975	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300018007\|Ga0187805_10225226	Not Available	858	Open in IMG/M
3300018009\|Ga0187884_10175167	Not Available	894	Open in IMG/M
3300018012\|Ga0187810_10401064	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300018018\|Ga0187886_1252569	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300018030\|Ga0187869_10112660	Not Available	1367	Open in IMG/M
3300018034\|Ga0187863_10239014	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300018034\|Ga0187863_10884494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300018038\|Ga0187855_10502409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	706	Open in IMG/M
3300018042\|Ga0187871_10126245	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1458	Open in IMG/M
3300018044\|Ga0187890_10613251	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300018044\|Ga0187890_10657207	Not Available	591	Open in IMG/M
3300018047\|Ga0187859_10108598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1462	Open in IMG/M
3300018085\|Ga0187772_10359729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1007	Open in IMG/M
3300019278\|Ga0187800_1695924	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300019284\|Ga0187797_1447791	All Organisms → cellular organisms → Bacteria	9123	Open in IMG/M
3300020580\|Ga0210403_10660445	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300020581\|Ga0210399_10488214	Not Available	1024	Open in IMG/M
3300020583\|Ga0210401_10109513	All Organisms → cellular organisms → Bacteria	2593	Open in IMG/M
3300021180\|Ga0210396_10038102	All Organisms → cellular organisms → Bacteria	4434	Open in IMG/M
3300021181\|Ga0210388_10265124	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300021402\|Ga0210385_10365413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1080	Open in IMG/M
3300021420\|Ga0210394_10574146	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300021420\|Ga0210394_10579923	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300021433\|Ga0210391_10210585	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300022557\|Ga0212123_10768359	Not Available	584	Open in IMG/M
3300022881\|Ga0224545_1005137	All Organisms → cellular organisms → Bacteria	2152	Open in IMG/M
3300023259\|Ga0224551_1045355	Not Available	764	Open in IMG/M
3300024233\|Ga0224521_1130085	Not Available	535	Open in IMG/M
3300025434\|Ga0208690_1035235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300025498\|Ga0208819_1102947	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	602	Open in IMG/M
3300027652\|Ga0209007_1079530	Not Available	826	Open in IMG/M
3300027729\|Ga0209248_10040310	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300027729\|Ga0209248_10072210	Not Available	1048	Open in IMG/M
3300027783\|Ga0209448_10127853	Not Available	850	Open in IMG/M
3300027825\|Ga0209039_10310296	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300027853\|Ga0209274_10594792	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300027869\|Ga0209579_10615834	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300027874\|Ga0209465_10664194	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300027898\|Ga0209067_10708917	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300028798\|Ga0302222_10372132	Not Available	558	Open in IMG/M
3300028871\|Ga0302230_10109022	Not Available	1104	Open in IMG/M
3300030580\|Ga0311355_11771073	Not Available	525	Open in IMG/M
3300030991\|Ga0073994_11790924	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300031249\|Ga0265339_10329660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300031249\|Ga0265339_10484918	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031258\|Ga0302318_10532176	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300031261\|Ga0302140_10282425	Not Available	1420	Open in IMG/M
3300031446\|Ga0170820_17588455	Not Available	671	Open in IMG/M
3300031524\|Ga0302320_10074856	All Organisms → cellular organisms → Bacteria	5696	Open in IMG/M
3300031679\|Ga0318561_10642658	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300031718\|Ga0307474_11613167	Not Available	509	Open in IMG/M
3300031719\|Ga0306917_10158429	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300031890\|Ga0306925_10616434	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300031954\|Ga0306926_12111446	Not Available	630	Open in IMG/M
3300032261\|Ga0306920_104297959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter dinghuensis	512	Open in IMG/M
3300032828\|Ga0335080_11942460	Not Available	571	Open in IMG/M
3300033004\|Ga0335084_10629529	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300033405\|Ga0326727_10886669	Not Available	670	Open in IMG/M
3300033822\|Ga0334828_069263	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300033982\|Ga0371487_0458039	Not Available	542	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.20%
Host-Associated	Host-Associated	1.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.15%
Aquatic	Environmental → Aquatic	45.05%
Plants	Host-Associated → Plants	1.80%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	42.34%
Soil	Environmental → Terrestrial → Soil	42.34%
Peat	Environmental → Terrestrial → Peat	10.81%
Sediment	Environmental → Aquatic → Sediment	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.90%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	42.34%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.62%
Loam	Environmental → Terrestrial → Soil → Loam	10.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.90%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	35.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.01%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.32%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	12.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.21%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.60%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.60%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.70%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.80%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.80%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.80%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.80%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300011110	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024233	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025498	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033822	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1000218102	3300002245	Forest Soil	MVAMEKWDDAHFREHDAHSRATAARDAYKDALRRANYGI*
JGIcombinedJ26739_1009860491	3300002245	Forest Soil	SMIAMEQWDGAHFREESAHAKATEAREAYKDGLRSANYGI*
JGI26347J50199_10308002	3300003350	Bog Forest Soil	MVAMEHWDTAHFTEEDTHTKATEAREAYKDGLRSANYGI*
Ga0062385_101332313	3300004080	Bog Forest Soil	TTDHSMTEMERWDAAHFAEQDAQQKATEAREGYKDSLRKVNYGI*
Ga0062385_101842734	3300004080	Bog Forest Soil	EEALATSDHSMIAMEKWDDAHFAEHKAHDQASKAREAYKDGLRLANYGI*
Ga0062384_1001820711	3300004082	Bog Forest Soil	PDNSMIAWEKWDAAHFQEDDAHANATKAREAYKDALRAINIGI*
Ga0062384_1003558963	3300004082	Bog Forest Soil	MIAMEKWDDAHFAEHKAHDQASKAREAYKDGLRLANYGI*
Ga0062387_1006417721	3300004091	Bog Forest Soil	MTAMEKWDDAHFKEHDAHAKATEAREAYKSGLRDANYGI*
Ga0062387_1008897801	3300004091	Bog Forest Soil	MIAMEHWDAAHFREQDAHSKATEAREAYKDALRAVNYGI*
Ga0062389_1003273833	3300004092	Bog Forest Soil	EEALATPDHSMIAMEHWDAAHFKEHDAHQKATEAREAYKDGLRRVNYGI*
Ga0062389_1019905912	3300004092	Bog Forest Soil	HSMIAMEHWDAAHFREQDAHSKATEAREAYKDALRAVNYGI*
Ga0062388_1007641182	3300004635	Bog Forest Soil	MIAMEKWDAAHFTEHDAHTKATEAREAYKDGLRGVNYGI*
Ga0070731_103256483	3300005538	Surface Soil	ATPDHSMTAMEKWDDAHFREEDAHKAAVEARDAYKDGLRKLNEGF*
Ga0070761_109466002	3300005591	Soil	AMEHWDDAHFKEQDAHEKATAARDAYKDALRGANYGI*
Ga0070762_105935973	3300005602	Soil	HWDAAHFREQDAHSKATEARETYKDALRALNYGI*
Ga0070764_100631253	3300005712	Soil	DHSMTAMEKWDDAHFKEQDAHSKATEARDAYKDGLRSVNYGI*
Ga0066903_1002760271	3300005764	Tropical Forest Soil	ATPDHSMTAMEKWDEARFTEQDAATRASEAREAYKSALRKVNYDF*
Ga0075030_1001296771	3300006162	Watersheds	EEALATPDHSMIAMEHWDAAHLKEHDAHTRTTEAREAYKDALRKVNYGM*
Ga0070765_1017425791	3300006176	Soil	PDHSMIAMEHWDAAHFREHDAHTKATQAREAYKDALRTVNYGI*
Ga0116133_10734682	3300009623	Peatland	MIAMEKWDDAHFRELDAHTKANKAREANKDGLRQVNYDI*
Ga0116133_10746801	3300009623	Peatland	EALATPDHSMIAMETWDEAHFKEHDAHAKVTAAREAYKDALRGVNYGI*
Ga0116113_10203751	3300009638	Peatland	LATPDHSMIAMERWDDAHFREHDSHAKVTEARDAYKDALRAMNYGI*
Ga0116101_10415551	3300009759	Peatland	PDHSMIAMEKWDDAHFRELDAHTKANKAREANKDGLRQVNYDI*
Ga0126384_109690421	3300010046	Tropical Forest Soil	MGLATPDHSIRAMEHWDAAHLTEQEAQAKATEAREAYKDVLREINYGI*
Ga0074046_109034402	3300010339	Bog Forest Soil	EEEALATPDHSMIAMEHWDAANFKEQDAKKKVVAAKEAYKDALRLFNYGI*
Ga0074044_105718401	3300010343	Bog Forest Soil	MEKWDDAHFKEDDAQKKATEARDAYKDGLRAVNYGI*
Ga0126372_127489362	3300010360	Tropical Forest Soil	LTAMEKREAARFTEQDAATRTAEKPKAYKSALRKVNYDF*
Ga0138578_11137321	3300011110	Peatlands Soil	VDEWVETIRAEETLATRDHSMIAMEKWDAAHFTEHYAHTKVTEAREAYKDGLRAVNYGI*
Ga0150983_127327371	3300011120	Forest Soil	IAMEHWDAAHFREQDAQSKATEAREAYKDALRAVNYGI*
Ga0150983_154859851	3300011120	Forest Soil	MTEMEQWDAAHFAEQAAQKKATEAREAHKDSLRKVNYGI*
Ga0181533_11103112	3300014152	Bog	DHSMIAMEAWDDAHFREHDAHTKVTGAREAYKDALRGVNYGI*
Ga0181524_100301175	3300014155	Bog	LATPDHSMIAMEKWDAAHFLEHDAHTKATEAREAYKDALRAVNYGI*
Ga0181524_104172041	3300014155	Bog	EAWDDAHFREHDAHTKVTEAREAYKDALRGVNYGI*
Ga0181530_106441262	3300014159	Bog	AWDDAHFREHDAHTKVTEAREAYKDALRGVNYGI*
Ga0181534_104673962	3300014168	Bog	HSMIAWEKWDAAHFKEHDSHLKATEKREAYKDELRRLNYGI*
Ga0181531_104097673	3300014169	Bog	LATPDHSMIAWEKWDDAHFREHDAHTKATAAREAYKDALRGVNYGI*
Ga0181526_101719272	3300014200	Bog	MIAMAAWDTAHFREHDAHTNATKACEAYQDALRGANYGI*
Ga0181526_106359102	3300014200	Bog	LATPDHSMTAMEHWDAAHFKEHDAHEKVTEAREAYKDALREVNYGI*
Ga0182018_106415131	3300014489	Palsa	ALASSDHSMIAMEKWDAAHFLEEDAHTKANEAREAYKDALRTVNYGI*
Ga0182041_104192923	3300016294	Soil	PDHSMTAMEHWDEAHFREQDAQTRMTGVREAYKDALRKANYGI
Ga0182032_118606861	3300016357	Soil	KAMEKWDDAHVTEQDAQARMAKAREAYKDALRRVNYGI
Ga0187877_14210472	3300017931	Peatland	DHSMIAMEAWDDAHFREHDAHTKATEAREAYQDALRGANYGI
Ga0187848_101867011	3300017935	Peatland	EKWDDAHFREEDAHAKATAAREAYKDGLRSANYGI
Ga0187879_102568011	3300017946	Peatland	MIAMEKWDDAHFRELDAHTKANKAREANKDGLRQVNYDI
Ga0187879_107868451	3300017946	Peatland	EEALATPDHSMIAMEKWDAAHFIEHDAHTKATEAREAYKDGLRGVNYGI
Ga0187847_100059077	3300017948	Peatland	MIAMAAWDTAHFREHDAHTNATKACEAYQDALRGANYGI
Ga0187847_100221071	3300017948	Peatland	MVAWERWDAAHFTEQDASAKATEAREAYKDALRAVNYGI
Ga0187847_104271891	3300017948	Peatland	ERWDDAHFREDDAHTKATEARETYKDGLRGANYGI
Ga0187783_100678302	3300017970	Tropical Peatland	MPFVPKELATPDHSETAMERWNDVGFREQQAHAKATAARDAYKDGLRLANYRF
Ga0187783_106081332	3300017970	Tropical Peatland	HSMTAMEEWDTAHFREQDAQEKATQAREKYKDELRRANYNI
Ga0187782_109329751	3300017975	Tropical Peatland	MPFVPKELATPDHSETAMERWNDVGFREQQAHAKATAARDAYKDGLRLANYGF
Ga0187805_102252262	3300018007	Freshwater Sediment	MIAMEKWDDAHFAEQDAQRKAKEARDEYKDGLRSVNYGI
Ga0187884_101751672	3300018009	Peatland	PDHSMIAMEAWDDAHFREHDAHTKVTEAREAYKDGLRGVNYGI
Ga0187810_104010641	3300018012	Freshwater Sediment	MIAMEHWDAAHFKEHDAHSKVTEAREAYKDMLRKVNYGI
Ga0187886_12525692	3300018018	Peatland	SMIAMEAWDDAHFREHDAHTKVTEAREAYKDGLRGVNYGI
Ga0187869_101126601	3300018030	Peatland	DHSMLAWEKWDDAHFREHDAHTKFTETREAYKDALRAINIGI
Ga0187863_102390141	3300018034	Peatland	TPDHSMIAMERWDAAHFKEHDAHQKATEAREAYKDGLRRVNYGI
Ga0187863_108844942	3300018034	Peatland	IAMEHWDATHFKEHDAHQKATEAREAYKDGLRRVNYGI
Ga0187855_105024091	3300018038	Peatland	MEKWDDAHFREQDAHSKYAEALEAYKDGLRNLNYGI
Ga0187871_101262451	3300018042	Peatland	EEALATSDHSIIAMEKWDAARFTEHDAHTKATEAREAYKDALRDDNCGF
Ga0187890_106132511	3300018044	Peatland	SMIAWEAWDAAHFKEHDAHTKAMEAREAYKDGLRGANYGI
Ga0187890_106572071	3300018044	Peatland	MEHWDAAHFREQDAHAKVTEAREAYKYALRGANYGI
Ga0187859_101085982	3300018047	Peatland	MIAMAAWDTAHFREHDAHTNATKAREAYQDALRGANYGI
Ga0187772_103597292	3300018085	Tropical Peatland	IAMERWDAAHLREHDAHAKATEAREAYQDALRGVNYGI
Ga0187800_16959241	3300019278	Peatland	SIGAIDDWEAAHFREHDAYSKAAAAREAYEGALRKVNYGF
Ga0187797_144779113	3300019284	Peatland	MTALEDWDAAHFREHDAHIRAAGAREAYKDALRRVNYGI
Ga0210403_106604452	3300020580	Soil	ATPDHSMIAMEHWDTAHFKEHDAHAKVTEARDAYKDGLRTVNYGI
Ga0210399_104882141	3300020581	Soil	TEEALATRDHSMIAMEHWDAAHFREQDAQSKAKEAREAYKDALRAVNYGI
Ga0210401_101095133	3300020583	Soil	ATPDHSMIAMEHWDAAHFREQDAQSKAKEAREAYKDALRAVNYGI
Ga0210396_100381026	3300021180	Soil	TPDHSMLAWEKWDDAHFREEDAHTKFSATREAYKDALRAVNIGI
Ga0210388_102651241	3300021181	Soil	TPDHSMVAMEKWDDAHLREHGTHEKVTQAREAYKDGLRAVNYGI
Ga0210385_103654132	3300021402	Soil	MEHWDFAHFKEHDAHQKATEAREAYKDGLRRLNYGI
Ga0210394_105741462	3300021420	Soil	ESLATPDHSMIAWEKWDEAHFREEDARAKFTEAREAYKDALRAVNIGI
Ga0210394_105799232	3300021420	Soil	DHSMTAMELWDAAHFREDDARTKATEARDAYKDALRDVNYGI
Ga0210391_102105853	3300021433	Soil	MTEMENWDAAHFAEQDAQQKATEAREAYKDSLRKVNYGI
Ga0212123_107683592	3300022557	Iron-Sulfur Acid Spring	MVATEKWDAAHFSEQDASEKAEKAREAYKDGVRFVNYGF
Ga0224545_10051371	3300022881	Soil	HSMIAMEQWDDAHFREHDAHSKVTEAREAYKDGLRGVNYGI
Ga0224551_10453552	3300023259	Soil	LATPDHSMIAMEKWDASHFEEEDAHAKVTKAREAYKAALRSMNYGI
Ga0224521_11300852	3300024233	Soil	HSMIAMEHWDTAHFREHDAHAKATEAREAYKDALRDVNYGI
Ga0208690_10352351	3300025434	Peatland	EALATADHSMIAMEKWDDAHFREEDAHTKATTAREAYKDGLREVNYGI
Ga0208819_11029472	3300025498	Peatland	AVEHWDTAHFKEHDAHSKVTEAREAYKDALRDVNYGI
Ga0209007_10795301	3300027652	Forest Soil	ATPDHSEVAMEKWDAVHFTEQDASAKATEAREAYKDALRGVNYGF
Ga0209248_100403102	3300027729	Bog Forest Soil	MEQWDAAHFAEQDAQKKGTEAREGYKDGLRKVNYGI
Ga0209248_100722102	3300027729	Bog Forest Soil	LATPDHSMIAWEKWDAAHFQEEDAHDKYTKAREAYKDALRGANIGI
Ga0209448_101278531	3300027783	Bog Forest Soil	HSMTAMELWDAAHLKEEDASTKAAESREAYKDGLRTINYGI
Ga0209039_103102962	3300027825	Bog Forest Soil	LATPDHSIIAMEHWDTAGFKEQDAQKAAISAKEAYKDALRLFNYGI
Ga0209274_105947921	3300027853	Soil	IAMEHWDDAHFKEQDAHEKATAARDAYKDALRGANYGI
Ga0209579_106158341	3300027869	Surface Soil	ATPDHSMTAMEKWDDAHFREEDAHKAAVEARDVYKDGLRKLNEGF
Ga0209465_106641941	3300027874	Tropical Forest Soil	MTAMEKWDEARFTEQDAATRASEAREAYKSALRKVNYDF
Ga0209067_107089171	3300027898	Watersheds	AMEHWDDAHFKEHDAHEKVTAARDAYKDALRSVNYGI
Ga0302222_103721321	3300028798	Palsa	WEDWDAAHLREQDAQAKVTDAREAYKDALRQINYNF
Ga0302230_101090222	3300028871	Palsa	MVAMEKWDDAHFTEHDAHSKATEAREAYKDALRKVNYGI
Ga0311355_117710731	3300030580	Palsa	SDHSMIAMEKWDAAHFLEEDAHSKANEAREAYKDALRTVNYGI
Ga0073994_117909241	3300030991	Soil	MTAMEQWDAAHFDEDNARKKAKEARDAYRDGLRGANYGI
Ga0265339_103296601	3300031249	Rhizosphere	TSDHSMIAMEKWDEAHFREHDAHAKVTEARDAYKDGLRGANYGI
Ga0265339_104849181	3300031249	Rhizosphere	HSMLAWEKWDAAHFKEHDAHGKVTEKREAYKDELRRLNYGI
Ga0302318_105321761	3300031258	Bog	TAMEHWDTAHFKEHDAHEKATAAREAYKNALRSVNYGI
Ga0302140_102824253	3300031261	Bog	CAEEDLATSDHSMTAWEKWDDAHFREHDAHTKATEAREAYKSALRKANYGI
Ga0170820_175884552	3300031446	Forest Soil	ATTDHSMTAMERWDDAHFKEQDAQPKAQQARDAYKDALRKANYGI
Ga0302320_100748561	3300031524	Bog	MEQWDDAHFREHDAHSKVTEAREAYKDGLRRVNYGI
Ga0318561_106426581	3300031679	Soil	TTDHSMTAMERWDEAHFREQDAQKKAAKACEAYKDALRAVNYSI
Ga0307474_116131672	3300031718	Hardwood Forest Soil	SMIAMEKWDDAHFKEHDAHEKATEAREAYKDGLRAVNYGI
Ga0306917_101584292	3300031719	Soil	EALATPDHSMTAMERWDEAHFREQDAQKKAAKACEAYKDALRAVNYGI
Ga0306925_106164342	3300031890	Soil	LATTDHSMTAMERWDEAHFREQDAQKKAAKACEAYKDALRAVNYSI
Ga0306926_121114462	3300031954	Soil	SMKAMEKWDDAHILEQDAQARVSKAREAYKDELRRVNYGI
Ga0306920_1042979591	3300032261	Soil	AAIRDEEALATPDHSMIAMEHWDAANFKERDAQKKVIAAKEAYKDALRLFNYGI
Ga0335080_119424602	3300032828	Soil	IAMEKWDAAHFTERSAHTKATEAREAYKDALRRVNYGF
Ga0335084_106295291	3300033004	Soil	MTAMEAWDDAHFKEQDAQEKTNQARDAYKDALRSVNYGI
Ga0326727_108866692	3300033405	Peat Soil	PDHSMTAMEKWDAAHFSEQDAQEKAAKACAAYKDALRSVNYGI
Ga0334828_069263_2_112	3300033822	Soil	MEQWDAAHFREHDAHTKATEAREAYKNELRGVNYGI
Ga0371487_0458039_9_119	3300033982	Peat Soil	MEHWDAAQFREQDAQAKATGAREAYKDALRGVNYGI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085918

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences