NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F085803

Metagenome Family F085803

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085803
Family Type Metagenome
Number of Sequences 111
Average Sequence Length 42 residues
Representative Sequence PNNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNII
Number of Associated Samples 87
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.20 %
% of genes from short scaffolds (< 2000 bps) 96.40 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.171 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(20.721 % of family members)
Environment Ontology (ENVO) Unclassified
(69.369 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.892 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1ACM2_10540021
2GOS2235_10129861
3GOS2216_101014574
4GOScombined01_1030757842
5GOScombined01_1054631542
6Ga0066858_101185191
7Ga0066857_100600113
8Ga0066856_103213712
9Ga0066845_102621751
10Ga0066845_102635111
11Ga0066865_102397701
12Ga0066865_102502572
13Ga0066835_101822341
14Ga0066377_100544931
15Ga0066377_101444491
16Ga0066377_102398991
17Ga0066370_102282251
18Ga0066370_102313171
19Ga0066370_102437372
20Ga0066371_102991271
21Ga0068495_11972511
22Ga0099693_14603931
23Ga0099954_15593811
24Ga0099953_16992342
25Ga0101444_1067497
26Ga0101666_10257571
27Ga0101671_10285642
28Ga0101672_10133691
29Ga0105741_11047912
30Ga0118730_13799962
31Ga0114932_101401843
32Ga0115013_107249821
33Ga0115011_105841591
34Ga0115011_112517221
35Ga0114933_107765122
36Ga0163110_103015041
37Ga0163110_109907511
38Ga0163110_109921781
39Ga0163110_113118381
40Ga0163110_116656981
41Ga0163109_106428582
42Ga0163109_108863852
43Ga0163109_112875771
44Ga0163179_117422201
45Ga0163179_122819991
46Ga0163111_103309871
47Ga0163111_109440411
48Ga0163111_111654071
49Ga0163111_114290602
50Ga0181403_11020851
51Ga0181388_11490451
52Ga0181416_11559401
53Ga0181431_10990931
54Ga0181402_11434741
55Ga0181402_11500871
56Ga0181397_11318012
57Ga0181392_10196701
58Ga0181425_11331292
59Ga0181425_11534281
60Ga0181425_11626331
61Ga0181395_12679382
62Ga0181424_102064391
63Ga0181580_107014431
64Ga0181601_104237951
65Ga0181572_105898151
66Ga0181562_104860701
67Ga0181596_103479622
68Ga0181597_103196291
69Ga0211494_10804661
70Ga0211627_10317622
71Ga0211505_10701482
72Ga0211647_101302942
73Ga0211498_103841592
74Ga0211678_100494401
75Ga0211678_101173861
76Ga0211499_100311391
77Ga0211523_102001981
78Ga0211557_105454662
79Ga0211653_100977143
80Ga0211576_102587041
81Ga0211545_103175931
82Ga0211545_104881331
83Ga0211551_103063171
84Ga0211514_100591361
85Ga0211486_102593032
86Ga0211640_100964961
87Ga0211714_105380181
88Ga0211577_107855242
89Ga0211541_100841603
90Ga0213861_104646471
91Ga0233426_102379862
92Ga0255753_12807032
93Ga0255769_101661141
94Ga0255778_103079592
95Ga0255782_102374292
96Ga0255761_102319353
97Ga0228673_10987072
98Ga0209630_101323831
99Ga0208261_11366071
100Ga0208390_11077192
101Ga0207985_10185471
102Ga0208277_10760481
103Ga0233395_10783031
104Ga0209359_105534431
105Ga0209404_112445791
106Ga0315322_105148342
107Ga0315331_107281162
108Ga0315331_110727881
109Ga0315326_106803722
110Ga0315316_113004522
111Ga0315315_113748352
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 50.00%    β-sheet: 0.00%    Coil/Unstructured: 50.00%
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Variant

510152025303540PNNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNIIExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
28.8%71.2%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Marine
Seawater
Marine Plankton
Marine
Surface Seawater
Seawater
Marine
Seawater
Marine Surface Water
Estuary Water
Marine
Seawater
Salt Marsh
Marine
Pelagic Marine
Seawater
Deep Subsurface
Volcanic Co2 Seeps
Volcanic Co2 Seep Seawater
20.7%3.6%10.8%5.4%9.9%20.7%11.7%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ACM2_105400213300001834Marine PlanktonINPKHKKKNVENFGLRLCGLSDVQLTFGIFLIFKNIF*
GOS2235_101298613300001954MarineHKKKNVENFGLKLNGLSELHFTFGIFFIFKNISAIIYIY*
GOS2216_1010145743300001972MarineHKKKNVENFGLKLKGFSELHFTFGIFFIFKNIIVISYIY*
GOScombined01_10307578423300002040MarineNIRKKNVENFGLKLNGFSELHFTFGIFFIFKNIIIISYIY*
GOScombined01_10546315423300002040MarinePNRDKPKHKKKNVENFGLKLNGFSELHFTFGIFLIFKNIIIISYIY*
Ga0066858_1011851913300005398MarineNKPSPKPNNDKPKHKKNNVENFGLKLNGLPELQYVFGTFFIDKNI*
Ga0066857_1006001133300005401MarinePSPKPNNDKPKHKKNNVENFGLKLNGLSELQYVFGTFFIDKNI*
Ga0066856_1032137123300005404MarinePNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIIISYIY*
Ga0066845_1026217513300005432MarineNNPSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFLIFKNIIIISYIY*
Ga0066845_1026351113300005432MarineNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYFY*
Ga0066865_1023977013300005523MarinePSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIIISYIY*
Ga0066865_1025025723300005523MarineHKKKNVENFGLRLCGLSDVQLTFGIFLIFKNIFS*
Ga0066835_1018223413300005606MarineSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0066377_1005449313300005934MarineKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0066377_1014444913300005934MarineRPNNVRPKHKKKKVENFGLKLYGLSELQLTFGIFLFLKTF*
Ga0066377_1023989913300005934MarineRPNNVRPKHKKKKVENFGLKLYGLSELQLTFGIFLFLKTS*
Ga0066370_1022822513300005971MarinePNPNNINPKHKKKNVENFGLRLCGLSDVQLTFGIFLIFKNIF*
Ga0066370_1023131713300005971MarineNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIIISYIY*
Ga0066370_1024373723300005971MarineKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0066371_1029912713300006024MarinePKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYFY*
Ga0068495_119725113300006337MarinePNIDKPKHKKKNVEKFGLKLYGFFELHFTFGIFFIFKNIIVISYIY*
Ga0099693_146039313300006345MarineVRPKHKKKKVENFGLKLYGLSELQLTFGIFFIFKNILISYFYYR*
Ga0099954_155938113300006350MarineSPRPNNIRPKHKKKKVENFGLKLYGLSELQLTFGIFFIFKNILISYFYYR*
Ga0099953_169923423300006351MarineNNIKPKHKKKKVENFGLKLYGLSELQLTFGIFFIFKNILISYFYYR*
Ga0101444_10674973300006620Marine Surface WaterKKNVENFGLKLNGLSELQCTFGIFFIFKNIFLLNYFYY*
Ga0101666_102575713300007113Volcanic Co2 Seep SeawaterPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIIISYIY*
Ga0101671_102856423300007133Volcanic Co2 SeepsKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIIISYIY*
Ga0101672_101336913300007152Volcanic Co2 SeepsPNNVRPKHKKKKVENFGLKLYGLSELQLTFGIFLFLKTS*
Ga0105741_110479123300007956Estuary WaterPNNIKPKQQKNNVKNLGLKLYGFSELQLTFGIFLIFKNII*
Ga0118730_137999623300009132MarinePNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIVVISYIY*
Ga0114932_1014018433300009481Deep SubsurfacePNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0115013_1072498213300009550MarineNINPKQQKNNAENFGLKLYGFSELQLTFGIFFIFKNII*
Ga0115011_1058415913300009593MarinePNNIKPKQQKNNVENLGLKLYGLLELQLTFGIFFIFKNIF*
Ga0115011_1125172213300009593MarinePSPKPNNIKPKQQKNNVENFGLKLYGFSELQFTFGTFFIFKNIF*
Ga0114933_1077651223300009703Deep SubsurfaceKPKHKKNNVENFGLKLNGLPELQFVFGTFFIDKNI*
Ga0163110_1030150413300012928Surface SeawaterNIKPKQQKNNVKNLGLKLYVFSELHFTLGIFFIFKNIF*
Ga0163110_1099075113300012928Surface SeawaterNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0163110_1099217813300012928Surface SeawaterNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNIF*
Ga0163110_1131183813300012928Surface SeawaterKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNII*
Ga0163110_1166569813300012928Surface SeawaterPNNISPKHKKKNVENFGLRLCGLPDVQLTFGIFLIFKNIF*
Ga0163109_1064285823300012936Surface SeawaterPNNIKPKQQKNNVEIFGFKFNGFLELQLVLGIFFMDKNII*
Ga0163109_1088638523300012936Surface SeawaterPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY*
Ga0163109_1128757713300012936Surface SeawaterPSPNPNKDKPKHKKKNVENFGLKFNGFSELQLTFGIFFIFKNINMINYIYQ*
Ga0163179_1174222013300012953SeawaterNPSPKPNNVNPKHKKNNVENFGLKLNGLLELQFVFGTFFIDKNI*
Ga0163179_1228199913300012953SeawaterPSPNPNNIKPKHKKKNVENLGLKLYGFLELQFTLGIFFIFKNIF*
Ga0163111_1033098713300012954Surface SeawaterKQQKNNVENLGLKLYVFSELQFTFGIFLIFKNIF*
Ga0163111_1094404113300012954Surface SeawaterNPNNIKPKQQKNSVKNLGLKLYVFSELQLTFGIFFIFKNIF*
Ga0163111_1116540713300012954Surface SeawaterDKPKHKKKNVENFGLKLKGFSELHLTFGIFFIFKNIIIINYIY*
Ga0163111_1142906023300012954Surface SeawaterKHKKKNVENFGLRLCGLSDVQLTFGIFLIFKNIF*
Ga0181403_110208513300017710SeawaterKPNNIKPKQQKNSVENFGLKLYIFSELHFTFGIFFIFKNIF
Ga0181388_114904513300017724SeawaterNVKPKHKKKNVENLGLKLKGFLELQFTFGIFFIFKNIF
Ga0181416_115594013300017731SeawaterVKPKHKKKNVENLGLKLYGFSELQFTLGIFFIFKNIF
Ga0181431_109909313300017735SeawaterNIKPKQQKNNVKNLGLKLYIFSELQFTFGIFFIFKNIF
Ga0181402_114347413300017743SeawaterNPKPNNVKPKHKKKNVENLGLKLYGFSELHFTLGIFFIFKNIF
Ga0181402_115008713300017743SeawaterKDKPKHKKKNVENLGLKLNGFSELHFTFGIFFIFKNIIIISYIY
Ga0181397_113180123300017744SeawaterPNKVRPKHKKKNVENFGLKLNGLSELQCTFGIFFIFKNIFLLNYFYY
Ga0181392_101967013300017749SeawaterPNPNRVRPKHKKKNVENFGLKLNGLSELQCTFGIFFIFKNIFLLNYFYY
Ga0181425_113312923300017771SeawaterDPSPKPNNIKQKQQKNNVENLGLKLYVFSELQFTFGIFLIFKNIF
Ga0181425_115342813300017771SeawaterANNISPKHKKKNVENFGLRLCDLSDVQLTFGIFLIFKNIF
Ga0181425_116263313300017771SeawaterPKQQKNNVENLGLKLYVFSELQFTFGIFFIFKNIF
Ga0181395_126793823300017779SeawaterIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNIPQ
Ga0181424_1020643913300017786SeawaterNVKPKQQKNNVENLGLKLYVFSELQFTFGTFFIFKNIF
Ga0181580_1070144313300017956Salt MarshKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYFY
Ga0181601_1042379513300018041Salt MarshKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0181572_1058981513300018049Salt MarshPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0181562_1048607013300019459Salt MarshKHKKKNVENFGLKLNGFSELHFTFGIFLIFKNIIIISYIY
Ga0181596_1034796223300020177Salt MarshNNINPKHKKKNVENFGLRLCGLSDVQLTFGIFLIFKNIF
Ga0181597_1031962913300020194Salt MarshNPSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0211494_108046613300020240MarineKPNNIKPKHKKKNVENLGLKLYGFSELQFTFGIFLIFKNIF
Ga0211627_103176223300020250MarineNPSPNPNNVKPKHKKKNVENFGLKLYGFSELQFTLGIFLIFKNII
Ga0211505_107014823300020352MarineNPKQQKNNVENLGLKLYIFSELQFTFGIFFIFKNII
Ga0211647_1013029423300020377MarineHKKKKVENFGLKLYGLSELQLTFGIFFIFKNILISYFYYR
Ga0211498_1038415923300020380MarinePSPKPNSIKPKQQKNNVKNLGLKLYGFSELQDTFGIFFIVKNIYK
Ga0211678_1004944013300020388MarineKPNNIKPKQQKNNVKNLGLKLYVFSELQFTIGIFFIFKNIFL
Ga0211678_1011738613300020388MarineSPKPNNIKPKQQKNNVENFGLRLYVFFELQKTTGIFFIVKNIIHFMTIV
Ga0211499_1003113913300020402MarineAPNNVNPKTKKKIVINFGLKLNGFLELHDFFGIFFIVKNIINY
Ga0211523_1020019813300020414MarineIKPKQQKNNVENFGLKLYGFSELQFTFGTFFIFKNIF
Ga0211557_1054546623300020418MarineSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0211653_1009771433300020421MarinePKPNNIKPKQQKNNVENFGLKLYGFSELQFTFGTFFIFKNIFX
Ga0211576_1025870413300020438MarineKPKQQKNNVKNLGLKLYIFSELQFTFGIFLIFKNII
Ga0211545_1031759313300020452MarineIKPIQQKNNVENFGLKLYGFSELQFTFGIFFIFKNIF
Ga0211545_1048813313300020452MarinePKHKKKNVESLGLKLYALSELHFTFGIFFIFKNIILISYLY
Ga0211551_1030631713300020456MarineNKPSPNPNNISPKHKKKNVDSFGLRLCGLSDVQLTFGIFLIFKNIF
Ga0211514_1005913613300020459MarinePKHKKKNVENFGLRLCGLSDVQFTFGIFLIFKNIFG
Ga0211486_1025930323300020460MarinePKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIVVISYIY
Ga0211640_1009649613300020465MarinePKPNKVSPKHKKKNVENFGLKLNGLSELQCTFGIFFIFKNIFLLNYFYY
Ga0211714_1053801813300020466MarineNSPSPNPNRVRPKHKKKNVENFGLKLNGLSELQCTFGIFFIFKNIFLLNYFYY
Ga0211577_1078552423300020469MarineNPSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNISIISYFY
Ga0211541_1008416033300020475MarineNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNIFE
Ga0213861_1046464713300021378SeawaterKPKQQKKNVENFGLKLYTFSELQLTFGIFFIFKNIF
(restricted) Ga0233426_1023798623300022920SeawaterSPKPNSINPKQQKNNVKNFGLKLYGFSELQLTFGIFLIFKNII
Ga0255753_128070323300022926Salt MarshKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0255769_1016611413300022927Salt MarshPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0255778_1030795923300023084Salt MarshNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFLIFKNIIIISYIY
Ga0255782_1023742923300023105Salt MarshNNPSPNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVISYIY
Ga0255761_1023193533300023170Salt MarshPKHKKKNVENFGFRLCGLSDVQLTFGIFLIFKNIFR
Ga0228673_109870723300024242SeawaterKPNNIKPKQQKNNVKNLGLKLYGFSELQLTFGIFLIFKNII
Ga0209630_1013238313300025892Pelagic MarineNIKPKQQKNNVKNLGLKLYGFSELQLTFGTFLIFKNII
Ga0208261_113660713300026076MarinePKHKKKNVENFGLRLCGFSDVQFTFGIFLIFKNIF
Ga0208390_110771923300026081MarineKHKKKKVENFGLKLYGLSELQLTFGIFFIFKNILISYFYYR
Ga0207985_101854713300026203MarinePNPNKDKPKHKKKNVENFGLKLNGFSELHFTFGIFFIFKNIIVINYIY
Ga0208277_107604813300026292MarinePNNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNII
Ga0233395_107830313300026511SeawaterPKPNNIKPKQQKNNVKNLGLKLYGFSELQLTFGIFLIFKNII
Ga0209359_1055344313300027830MarinePNRDNPKHKKKNVENFGLKLYVFSELHLTLGIFLIFKNII
Ga0209404_1124457913300027906MarinePNNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNIFK
Ga0315322_1051483423300031766SeawaterKPNNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNII
Ga0315331_1072811623300031774SeawaterNNIKPKQQKNNVENFGLKLYGFSELQFTFGIFFIFKNII
Ga0315331_1107278813300031774SeawaterPKPNNIKPKQQKNNVKNRGLKLYIFSELQFTFGTFFIFKNIF
Ga0315326_1068037223300031775SeawaterNKVRPKHKKKNVENFGLKLNGLSELQCTFGIFFIFKNIFLLNYFYY
Ga0315316_1130045223300032011SeawaterIKPKQQKNNVENLGLKLYVFLELQFTFGTFFIFKNIF
Ga0315315_1137483523300032073SeawaterKKKNVENFGLKLNGFSELHFTFGIFLIFKNIVIISYIY


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