Basic Information | |
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Family ID | F085778 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 43 residues |
Representative Sequence | IVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 7.27 % |
% of genes near scaffold ends (potentially truncated) | 87.39 % |
% of genes from short scaffolds (< 2000 bps) | 87.39 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.65 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (77.477 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.117 % of family members) |
Environment Ontology (ENVO) | Unclassified (36.036 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (42.342 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 40.00% Coil/Unstructured: 60.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.65 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Groundwater Sediment Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Grass Soil Soil Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Forest Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPINP_02148120 | 2065487018 | Soil | IVKILREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKHHE |
2222079042 | 2209111022 | Grass Soil | VREDDPDGKWNYEAFVKASGKEFLFEVDPNGNFVKEHK |
ICChiseqgaiiFebDRAFT_139012602 | 3300000363 | Soil | DDPDGKWNYEVLVKANGKESKFEVDPNGNFVKQHE* |
JGI11615J12901_100622301 | 3300000953 | Soil | IVQIKREGDVNGKWNYEVVVRTNGKEWGFEMDPSGKFVKKHSDQK* |
JGI1027J12803_1032134621 | 3300000955 | Soil | VKVLREDDPDGKWNYEVFVKANGKEAGFEVDPNGQFVKQHE* |
JGI1027J12803_1040508932 | 3300000955 | Soil | QVVKVMREDDPDGKWNYEVLIKANGKESKFEVDPNGNFVKQHE* |
JGI1027J12803_1071432192 | 3300000955 | Soil | AGGEIVRVIREDDPDGKWNYEVFVKTNGTESVFEVDPNGKFVRQRSEVRK* |
JGI25390J43892_100475841 | 3300002911 | Grasslands Soil | REDDANGKWNYEVVVRTNGKEWGFEVDPNGKFLKKHTEVKK* |
JGI25405J52794_100005641 | 3300003911 | Tabebuia Heterophylla Rhizosphere | MKREDDANGRWNYEVVVKSQGKEWGFEVDPNGKLLKTHGEKK* |
Ga0062595_1016232942 | 3300004479 | Soil | KVMREDDPDGKWNYEVLAKVNGKDSKFEVDPNGTFVKQHE* |
Ga0070683_1010691751 | 3300005329 | Corn Rhizosphere | REDDPDGKWNYEVVVKANGKESGFEVDPNGRFVKHHEAN* |
Ga0070713_1001533192 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | VKREDDTNGRWNYEVVVRTNGKEWGFEVAPNGRFVKKHGEKTMGRQ* |
Ga0070707_1015431401 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | VKREDDTNGRWNYEVVVRTNGKEWGFEVDPNGKLLKQHSAIKR* |
Ga0070704_1012608481 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | VKREDDTNGRWNYEVVVRTNGKDWGFEIDPNGKVLKQREAKE* |
Ga0070664_1013070631 | 3300005564 | Corn Rhizosphere | REDDPDGKWNYEVFVKANGKDSQFEVDPNGNFVKQHE* |
Ga0068854_1013541292 | 3300005578 | Corn Rhizosphere | VMREDDRDGKWNYEVFVKTEGKEWCFEVNPQGKFVKKHDATQHKEH* |
Ga0066691_101884803 | 3300005586 | Soil | DANGKWNYEVVVRTNGKESGFEVDPNGKLLRQHAEVKR* |
Ga0066905_1009745662 | 3300005713 | Tropical Forest Soil | REDDPDGKWNYEVFVKANGKESKFEVDPNGNFVKHHE* |
Ga0066903_1005438294 | 3300005764 | Tropical Forest Soil | MREDDPDGKWNYEVVVNANGKESKFEVDPNGNFVKQHE* |
Ga0066903_1017115731 | 3300005764 | Tropical Forest Soil | GVKREDDSNGKWNYEVVVRTNGKDWGFEVDPNGKFVKKHSDQKTMGR* |
Ga0066903_1056543142 | 3300005764 | Tropical Forest Soil | VLREDDPDGKWNYEVFVKANRKESGFEVDPNGKFVKQHD* |
Ga0081455_101167241 | 3300005937 | Tabebuia Heterophylla Rhizosphere | ANGKWNYEVVAKTNGKEWKFEVDPNGKFVKKHDEAKK* |
Ga0068871_1001272013 | 3300006358 | Miscanthus Rhizosphere | DPDGKWNYEVFVKASGKDSLFEVDPNGNFVKQHE* |
Ga0075424_1014366161 | 3300006904 | Populus Rhizosphere | AGGNVVKVMREDDPDGKWNYEVFVKTNGKESGFEVDPNGKFLREHSE* |
Ga0105245_128778132 | 3300009098 | Miscanthus Rhizosphere | RVIREDDPDGKWNYEVFVKTNGTESVFEVDPNGKFVRQHSEVRK* |
Ga0114129_118140542 | 3300009147 | Populus Rhizosphere | MREDDPDGKWNYEVHVKANGKDSKFEVDPNGSFVKQHE* |
Ga0075423_111460042 | 3300009162 | Populus Rhizosphere | SEDDPNGKWNYEVVVKTNGKESGFEVDPNGKLVRHHGEQKK* |
Ga0105241_100858621 | 3300009174 | Corn Rhizosphere | EDDPDGKWNYEIHVKGNGKDSKFEVDPNGTFVKNQE* |
Ga0126312_102249291 | 3300010041 | Serpentine Soil | KVVQVKREDDTNGKWNYEVVVKTNGEESAFEVDPNGKFLKKHPELRK* |
Ga0126380_104251531 | 3300010043 | Tropical Forest Soil | GQVVKVVREDDPDGKWNYEVFVKANGKESGFEVDPNGNFVKQHE* |
Ga0126380_111814852 | 3300010043 | Tropical Forest Soil | RVIREDDPDGKWNYEVVVKTNGKESGFEVDPNGRFVKHHEPN* |
Ga0126384_107728851 | 3300010046 | Tropical Forest Soil | VIKVVREDDPDGKWNYEVFLTANGKESGFEVDPNGQFVKNHGE* |
Ga0126373_132012812 | 3300010048 | Tropical Forest Soil | PDGKWNYEVFVAANGKELGFEIDPNGQFVKNHGE* |
Ga0134086_104004222 | 3300010323 | Grasslands Soil | GGKVVQVKREDDTNGKWNYEVVVKTNGEESAFEVDPNGKFLRQHTEIKR* |
Ga0126379_132083891 | 3300010366 | Tropical Forest Soil | DSNGKWNYEVVVKTNGKESGFEVDPNGKLLKQHAEIKR* |
Ga0126379_135934502 | 3300010366 | Tropical Forest Soil | VTRVMREDDPDGRWNYEVVVTTNGKESGFEVAPSGKFVKQHSEIKK* |
Ga0134128_124517051 | 3300010373 | Terrestrial Soil | RVIREDDPNGKWNYEVVVKTNGKESGFEVDPNGKLVRHHGELKK* |
Ga0105239_112067291 | 3300010375 | Corn Rhizosphere | EDDPDGKWNYEVSVKANGKDSLFEVDPNGNFVKQHE* |
Ga0126381_1001893731 | 3300010376 | Tropical Forest Soil | DPDGKWNYEVFVKANGKESGFEVDPNGQFVKNHE* |
Ga0126381_1021914131 | 3300010376 | Tropical Forest Soil | DPDGKWNYEVFVKANGKQSGFEIDPNGKFVKEHSE* |
Ga0126383_118044371 | 3300010398 | Tropical Forest Soil | DDPDGKWNYEVHAKADGKDLKFEVDPDGKFVKQQE* |
Ga0134121_103811641 | 3300010401 | Terrestrial Soil | DPDGKWNYEVFVKTNGSESVFEVDPNGKFVRQHSEVRK* |
Ga0137463_11016862 | 3300011444 | Soil | REDDPDGKWNYEVFVKANGKDSGFEVDPNGKFVKQHE* |
Ga0137382_107883521 | 3300012200 | Vadose Zone Soil | KAAGGSIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKNHE* |
Ga0137382_112067632 | 3300012200 | Vadose Zone Soil | RIKREDDANGKWNYEVVVRTNGKEWGFEVDPNGKFLKQQSGITE* |
Ga0137378_105676201 | 3300012210 | Vadose Zone Soil | VKREDDANGKWNYEVVVRTNGKESGFEVDPNGKLLRQHAEVKR* |
Ga0150985_1211580232 | 3300012212 | Avena Fatua Rhizosphere | SGGNIVKVLREDDPDGKWNYEVFVNANGKQSGFEVDPNGKFVREHGE* |
Ga0137385_107227411 | 3300012359 | Vadose Zone Soil | VVQVRREDDSNGKWNYEIVVKTNGKESEFEVDPNGKFLRQHTEIKR* |
Ga0137385_113492312 | 3300012359 | Vadose Zone Soil | NQKAAGGKVVQVKREDDTNGKWNYEVVVKTNGEESAFEVDPNGKFLRQHTEIKR* |
Ga0137385_114750371 | 3300012359 | Vadose Zone Soil | VKREDDANGKWNYEVVVRTNGKESGFEVDPKGKFLRIKR* |
Ga0137358_101361181 | 3300012582 | Vadose Zone Soil | IVKVLREDAPDGKWNYEVCVKANGKESGFEIDPNGKFVKQHE* |
Ga0137394_102667071 | 3300012922 | Vadose Zone Soil | AGGGSIVKVLREDDPDGKWNYEVFVKASGKESGFEVDPNGKFVKQHE* |
Ga0137419_100249753 | 3300012925 | Vadose Zone Soil | VRREDDANGKWNYEVVVRTNGKEWGFEVDPNGKFLKKHTEIKR* |
Ga0137404_119880731 | 3300012929 | Vadose Zone Soil | DANGKWNYEVVVKTNGKESGFEVDPNGKFVRQHTEVKR* |
Ga0126375_106558182 | 3300012948 | Tropical Forest Soil | GGKIVRITREDDPDGKWKYEVVVSANGKESGFEVDPNGKFLKQHTEVHK* |
Ga0164303_104175431 | 3300012957 | Soil | KAAGGQIVKVVREDDPDGKWNYEAFVKASGKESLFEVDPNGTFVKQHE* |
Ga0164303_106208231 | 3300012957 | Soil | GNVVKVMREDDPDGKWNYEVVVKANGKESGFEVDPNGRLVKAHRVVTK* |
Ga0164303_113439181 | 3300012957 | Soil | DPDGKWNYEVFVKANGKEALFEVDPNGQFVKQHEYYTAAVT* |
Ga0126369_101246785 | 3300012971 | Tropical Forest Soil | DANGKWNYEVVVKTNGKESGFEVDPNGKFVKQRTETR* |
Ga0126369_103868553 | 3300012971 | Tropical Forest Soil | AAGGDIVKVLREDDPDGRWNYEVFVKANGKDSGFEVDPNGKFVKHHSE* |
Ga0126369_115641032 | 3300012971 | Tropical Forest Soil | KVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKLVKDHSE* |
Ga0134087_100332461 | 3300012977 | Grasslands Soil | QKTAGGEVVQVKREDDANGTWNYEVVVRTNGKESGFEVDPKGNS* |
Ga0164309_114538301 | 3300012984 | Soil | AGGQIVKVLREDDPDGKWNYEVFVKASGKESLFEVDPNGEFVKQHE* |
Ga0164307_107915262 | 3300012987 | Soil | VKVLREDDPDGKCNYEVLVKANGKESGVEVDPNGQFVKQHE* |
Ga0164306_104489311 | 3300012988 | Soil | KVVRVMREDDPDGKWNYEVFVTTNGKASGFEVDPNGKFLKEHSE* |
Ga0157371_104627541 | 3300013102 | Corn Rhizosphere | REDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE* |
Ga0157374_117394781 | 3300013296 | Miscanthus Rhizosphere | KAAGGQVVKVLREDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE* |
Ga0157378_107668131 | 3300013297 | Miscanthus Rhizosphere | KAAGGEVVRVIREDDPDGKWFYEVVVKANGKESGFEVDMHGKVVRHHG* |
Ga0163162_101293134 | 3300013306 | Switchgrass Rhizosphere | GQVVKVLREDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE* |
Ga0157375_132015971 | 3300013308 | Miscanthus Rhizosphere | EDDPDGKWNYEVVAKANGKESKFEVDPNGNFVKQHE* |
Ga0137418_106505152 | 3300015241 | Vadose Zone Soil | AAGGEVVQVRREDDSNGKWNYEVVVRTNEKESGFEVDPNGKFLRQHAEIKR* |
Ga0132258_103861912 | 3300015371 | Arabidopsis Rhizosphere | DKAAGGTVVKVMREDDPDGKWNYEVVAKANGKESKFEVDPNGNFVKQHE* |
Ga0132258_114288161 | 3300015371 | Arabidopsis Rhizosphere | GGNIVKVVREDDPDGKWNYEVFVKANGKDSLFEVDPNGNFVKQHE* |
Ga0132258_125916732 | 3300015371 | Arabidopsis Rhizosphere | MREDDPDGKWNYEVFVKTSGKESGFEVDPNGKFLREHSE* |
Ga0132255_1026247841 | 3300015374 | Arabidopsis Rhizosphere | KAAGGSIVKVLREDDPDGRWNYEVFVKASGKDSGFEVDPNGQFVKQHE* |
Ga0132255_1034308421 | 3300015374 | Arabidopsis Rhizosphere | NVVKVMREDDPDGKWNYEVFVTTNGKKSGFEVDPNGKFLREHNE* |
Ga0132255_1045478851 | 3300015374 | Arabidopsis Rhizosphere | VKVVREDDPDGKWNYEASVKASGKESLFEVDPNGNFVKQHE* |
Ga0184620_102753142 | 3300018051 | Groundwater Sediment | NQKAAGGSIIKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE |
Ga0184618_103466151 | 3300018071 | Groundwater Sediment | MKRRQAGEIVHVKREDDTNGKWNYEVVVKASGKEWQFEVDPNGKFVKKHGETKE |
Ga0173479_108012602 | 3300019362 | Soil | MEPGPPEGKAAGGEIVRVKREDDVNGKWNYEVVVRTNGKEWGFEVDPNGKFRKKYGQIKE |
Ga0193727_10344051 | 3300019886 | Soil | GEIVHVKREDDTNGKWNYEVVVKTSGKEWQFEVDPNGKFVKKHGETKE |
Ga0193710_10131202 | 3300019998 | Soil | VKREDDTNGKWNYEVVVKTSGKEWQFEVDPNGKFVKKHGETKE |
Ga0193692_10686812 | 3300020000 | Soil | GQIVKVLREDDPDGKWNYEVFVKANGKDSLFEVDPNGNFVQQHE |
Ga0193730_11555701 | 3300020002 | Soil | IVKVLREDDPDGKWNYEVFVKANGKESGFEIDPNGKFVKNHGE |
Ga0193757_10038692 | 3300020008 | Soil | AGGQIVKVLREDDPDGKWNYEVFVKASGKESGFEVDPNGQFVKQHE |
Ga0193721_10255802 | 3300020018 | Soil | KAAGGQIVKVLREDDPDGKWNYEVFVKANGKESGFEIDPNGKFVKHHGE |
Ga0193745_10754361 | 3300020059 | Soil | GGQIIKVLREDDPDGKWNYEVFVKANGKESLFEVDPNGTFVKQHE |
Ga0210401_102204471 | 3300020583 | Soil | VEREDDKNGKWNYEVIVKTNGKKWGFEVDPNGKYVRNHAKPSQAE |
Ga0193719_100155681 | 3300021344 | Soil | GSIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE |
Ga0193709_11160061 | 3300021411 | Soil | KVLREDDPDGKWNYEVFVKANGKESVFEVDPNGNFVKQHE |
Ga0224452_11700192 | 3300022534 | Groundwater Sediment | KAAGGEIVHVKREDDTNGKWNYEIVVKTNGKESKFEVDPNGKFLKKHGETKE |
Ga0222622_110421021 | 3300022756 | Groundwater Sediment | EDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKDHE |
Ga0247666_11017081 | 3300024323 | Soil | EGGQVVNVMREDDPDGKWNYEIHVKGNGKDSKFEVDPNGTFVKNQE |
Ga0207692_102844512 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | EDDPDGKWNYEVVVSANGKKSGFEVDPNGKFVRQHNEIPE |
Ga0207693_104352031 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | LREDDPDGKWNYEVFVKANGKESGFEVDPNGQFVKNHE |
Ga0207687_114758112 | 3300025927 | Miscanthus Rhizosphere | GGQVVKVLREDDPDGKWNYEVVVKASGKASRFEVDPNGNFVKQHE |
Ga0207701_110637382 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | VREDDPDGKWNYEAFVKASGKESLFEVDPSGNFVKQHE |
Ga0207644_118506211 | 3300025931 | Switchgrass Rhizosphere | GGQIVKVLREDDPDGKWNYEVFVKASGKDSGFEVDPNGQFVKQHE |
Ga0207661_121624061 | 3300025944 | Corn Rhizosphere | VKVMREDDPDGKWNYEVLAKVNGKDSKFEVDPNGNFVKQHE |
Ga0307312_109830721 | 3300028828 | Soil | IVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGKFVKQHE |
Ga0307289_103292302 | 3300028875 | Soil | AAGQEIVRVKREDPDGRWNYEVVARPSGKEWGFEVDPNGKFLKEDSENSECK |
Ga0307289_103450901 | 3300028875 | Soil | KAAGGQIVKVLREDNPDGKWNYEVFVKANGKDSKFEVDPNGSFVKQHE |
Ga0075386_120331381 | 3300030916 | Soil | GGSIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGQFVKQHE |
Ga0075373_100377211 | 3300030945 | Soil | AAGGQIVKVLREDDPDGKWNYEVFVKANGKESGFEVDPNGQFVKQHE |
Ga0170820_129106591 | 3300031446 | Forest Soil | PDGKWNYEVVVKTNGKESGFDVDPNGRFAKHHEAN |
Ga0170820_131582851 | 3300031446 | Forest Soil | REDDPDGKWNYEVSVKANGKDSLFEVDPNGNFVKQHE |
Ga0170820_132986231 | 3300031446 | Forest Soil | GGQIVKVIREDDPDGKWNYEAFVKASGKESLFEVDPNGQFVKQHE |
Ga0306918_106335762 | 3300031744 | Soil | MREDDPDGKWNYEVHVKANGKDSKFEVDPNGNFVKQHQ |
Ga0306925_103292611 | 3300031890 | Soil | MREDDPDGKWNYEVFVKTSGKESGFEVDPNGKFLREHSE |
Ga0306921_101854703 | 3300031912 | Soil | AGGTVVKVMREDDPDGKWNYEVHVKANGKDSKFEVDPNGNFVKQHQ |
Ga0247830_115745192 | 3300033551 | Soil | VLREDDPDGKWNYEVFVKANGKESLFEVDPNGTFVKQHE |
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