Metagenome / Metatranscriptome Family F085657

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085657
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	59 residues
Representative Sequence	MDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Number of Associated Samples	99
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	19.09 %
% of genes near scaffold ends (potentially truncated)	22.52 %
% of genes from short scaffolds (< 2000 bps)	95.50 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.964 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (43.243 % of family members)
Environment Ontology (ENVO)	Unclassified (38.739 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.351 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.41% Coil/Unstructured: 71.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00296	Bac_luciferase	41.44
PF07883	Cupin_2	39.64
PF00958	GMP_synt_C	3.60
PF02540	NAD_synthase	1.80
PF00478	IMPDH	0.90
PF01435	Peptidase_M48	0.90
PF03640	Lipoprotein_15	0.90
PF01370	Epimerase	0.90
PF00216	Bac_DNA_binding	0.90
PF12833	HTH_18	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	41.44
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	3.60
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	1.80
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.90
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.96 %
Unclassified	root	N/A	35.14 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.81 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.80 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.80 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Tylenchina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Tylenchomorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Tylenchomorpha	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.80 %
Tylenchoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Tylenchomorpha → Tylenchoidea	0.90 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.90 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106234186	Not Available	511	Open in IMG/M
3300004156\|Ga0062589_100329756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1198	Open in IMG/M
3300004479\|Ga0062595_101547280	Not Available	615	Open in IMG/M
3300005337\|Ga0070682_101588858	Not Available	565	Open in IMG/M
3300005438\|Ga0070701_11110203	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005578\|Ga0068854_101960368	Not Available	539	Open in IMG/M
3300006031\|Ga0066651_10128436	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300006605\|Ga0074057_11674436	Not Available	505	Open in IMG/M
3300009148\|Ga0105243_11660646	Not Available	667	Open in IMG/M
3300009174\|Ga0105241_11300057	Not Available	693	Open in IMG/M
3300009177\|Ga0105248_10674110	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300009840\|Ga0126313_11189049	Not Available	628	Open in IMG/M
3300010042\|Ga0126314_11116468	Not Available	587	Open in IMG/M
3300010044\|Ga0126310_11332880	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010322\|Ga0134084_10248759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	641	Open in IMG/M
3300010371\|Ga0134125_12031136	Not Available	625	Open in IMG/M
3300011000\|Ga0138513_100044655	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300011003\|Ga0138514_100018498	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300011107\|Ga0151490_1037595	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300012200\|Ga0137382_10262616	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300012201\|Ga0137365_10268012	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300012204\|Ga0137374_10319891	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300012208\|Ga0137376_10370614	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300012212\|Ga0150985_117382663	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300012350\|Ga0137372_10287023	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300012350\|Ga0137372_10565780	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300012355\|Ga0137369_10701703	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300012360\|Ga0137375_10396288	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300012469\|Ga0150984_110881917	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012488\|Ga0157343_1005612	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300012498\|Ga0157345_1029824	Not Available	605	Open in IMG/M
3300012507\|Ga0157342_1049227	Not Available	588	Open in IMG/M
3300012896\|Ga0157303_10177398	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300012908\|Ga0157286_10046385	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300012911\|Ga0157301_10166081	Not Available	716	Open in IMG/M
3300012915\|Ga0157302_10376680	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300012960\|Ga0164301_10866129	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300012960\|Ga0164301_11694229	Not Available	528	Open in IMG/M
3300012961\|Ga0164302_10325817	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300012986\|Ga0164304_11062768	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300012987\|Ga0164307_11307233	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300012989\|Ga0164305_10442574	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300012989\|Ga0164305_11391877	Not Available	617	Open in IMG/M
3300013308\|Ga0157375_11851032	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300014969\|Ga0157376_11255433	Not Available	770	Open in IMG/M
3300015371\|Ga0132258_11681185	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300015372\|Ga0132256_100505030	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300015373\|Ga0132257_100740783	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300017965\|Ga0190266_10592968	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300018051\|Ga0184620_10012035	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300018054\|Ga0184621_10020850	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300018061\|Ga0184619_10383384	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300018061\|Ga0184619_10538270	Not Available	512	Open in IMG/M
3300018071\|Ga0184618_10420575	Not Available	564	Open in IMG/M
3300018081\|Ga0184625_10284417	Not Available	865	Open in IMG/M
3300019356\|Ga0173481_10326337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300019767\|Ga0190267_10281178	Not Available	848	Open in IMG/M
3300019875\|Ga0193701_1001265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4332	Open in IMG/M
3300022883\|Ga0247786_1113409	Not Available	593	Open in IMG/M
3300024055\|Ga0247794_10310988	Not Available	532	Open in IMG/M
3300025321\|Ga0207656_10237972	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300025915\|Ga0207693_10787837	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300025916\|Ga0207663_10450972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	992	Open in IMG/M
3300025924\|Ga0207694_11219415	Not Available	636	Open in IMG/M
3300025941\|Ga0207711_11536803	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300025945\|Ga0207679_11426097	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300026118\|Ga0207675_100856032	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300026142\|Ga0207698_11057482	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Tylenchomorpha → Tylenchoidea	823	Open in IMG/M
3300028587\|Ga0247828_10455694	Not Available	750	Open in IMG/M
3300028597\|Ga0247820_10575306	Not Available	775	Open in IMG/M
3300028704\|Ga0307321_1081718	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300028705\|Ga0307276_10024517	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300028707\|Ga0307291_1034374	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300028707\|Ga0307291_1106075	Not Available	702	Open in IMG/M
3300028710\|Ga0307322_10037536	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300028721\|Ga0307315_10018326	All Organisms → cellular organisms → Bacteria	1795	Open in IMG/M
3300028721\|Ga0307315_10135987	Not Available	740	Open in IMG/M
3300028722\|Ga0307319_10041634	Not Available	1434	Open in IMG/M
3300028722\|Ga0307319_10239422	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300028744\|Ga0307318_10193614	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300028744\|Ga0307318_10291569	Not Available	571	Open in IMG/M
3300028755\|Ga0307316_10373978	Not Available	526	Open in IMG/M
3300028771\|Ga0307320_10121650	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300028778\|Ga0307288_10026845	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300028787\|Ga0307323_10263994	Not Available	620	Open in IMG/M
3300028787\|Ga0307323_10364432	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300028796\|Ga0307287_10246207	Not Available	677	Open in IMG/M
3300028807\|Ga0307305_10087189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1443	Open in IMG/M
3300028811\|Ga0307292_10039555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1736	Open in IMG/M
3300028812\|Ga0247825_10663580	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300028814\|Ga0307302_10161771	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300028819\|Ga0307296_10425966	Not Available	725	Open in IMG/M
3300028828\|Ga0307312_10846329	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300028828\|Ga0307312_10915368	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300028872\|Ga0307314_10104806	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300028875\|Ga0307289_10003179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6563	Open in IMG/M
3300028875\|Ga0307289_10195815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	831	Open in IMG/M
3300028881\|Ga0307277_10240792	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300028884\|Ga0307308_10521060	Not Available	570	Open in IMG/M
3300028889\|Ga0247827_11133794	Not Available	539	Open in IMG/M
3300031093\|Ga0308197_10056428	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300031152\|Ga0307501_10089928	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031164\|Ga0307502_10000253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	14328	Open in IMG/M
3300031199\|Ga0307495_10083307	Not Available	727	Open in IMG/M
3300031421\|Ga0308194_10369111	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031908\|Ga0310900_11409147	Not Available	585	Open in IMG/M
3300031938\|Ga0308175_100325784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1577	Open in IMG/M
3300031939\|Ga0308174_10224014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1447	Open in IMG/M
3300034384\|Ga0372946_0159581	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300034384\|Ga0372946_0442097	Not Available	631	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.08%
Host-Associated	Host-Associated	18.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.68%
Plants	Host-Associated → Plants	18.92%
Aquatic	Environmental → Aquatic	5.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.01%
Sediment	Environmental → Aquatic → Sediment	5.41%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.41%
Loam	Environmental → Terrestrial → Soil → Loam	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.70%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	56.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.21%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.41%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.80%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	43.24%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.41%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.80%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012498	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.yng.090410	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031164	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1062341861	3300000956	Soil	MDYEFEPHGALDVSEGRAQPKYEKLVMRGGRFYLEGTLPTGKPFSVQLGPSDSSTAPPAR
Ga0062589_1003297562	3300004156	Soil	MNPEFESNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPDGEPFTVQLGPSDASSEPAR*
Ga0062595_1015472802	3300004479	Soil	MNPEFEPNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPDGEPFTVQLGPSDASSEPAR*
Ga0070682_1015888582	3300005337	Corn Rhizosphere	LDVSGYAAQPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDASSDPPSR*
Ga0070701_111102032	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MESDFEHHKRLDVSGYAAQPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDASSDPPSR
Ga0068854_1019603681	3300005578	Corn Rhizosphere	MDYEFEQQPGAADRASAQAQPRYERLVMRAGRFYLEGSLPDGEPFTVQLGPSDASSEPAR
Ga0066651_101284363	3300006031	Soil	MDPEFEPHGALDVTEGRAQPKYEKLVMRGGRFYLEGTLPTGEPFSVQLGPSDSSTAPPAR
Ga0074057_116744362	3300006605	Soil	MDQEFERFQPLGAAPGQAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR*
Ga0105243_116606462	3300009148	Miscanthus Rhizosphere	MKFEFEPHGALDPSEVRAQPKYEKLVMREGRFYLQGTLPTGAPFSVQLGPSDASSEPPAR
Ga0105241_113000572	3300009174	Corn Rhizosphere	MKFEFEPHGALDPSEVRAQPKYEKLVMREGRFYLEGTLPTGAPFSVQLGPSDASSAPPAR
Ga0105248_106741103	3300009177	Switchgrass Rhizosphere	MESDFEHHKRLDVSGYAAQPKYDKLVMRDGRFYLQGTLPTGAPFSVQLGPSDASSEPPAR
Ga0126313_111890491	3300009840	Serpentine Soil	HEPLDVSAYRAQPKYEKLVMRAGQFYLQGTLSTGEPFSVQLGPSDASSDPPSR*
Ga0126314_111164682	3300010042	Serpentine Soil	MDYEFERRESVDVSPGQAQPKYEKLVMREGRFYLQGTLPTGASFSVQLGPSDASSGPPAR
Ga0126310_113328802	3300010044	Serpentine Soil	MDYEFERRESVDVTPGQAQPKYEKLVMRDGRFYLRGTLATGEAFSVQL
Ga0134084_102487591	3300010322	Grasslands Soil	MDHQFERRESVEVSPGQAQPKYEKLVVREGRFYLQGTLPTGQPFSVQLGPSDASSEPPAR
Ga0134125_120311362	3300010371	Terrestrial Soil	MNPEFESNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPGGEAFTVQLGPSDASSEPAR*
Ga0138513_1000446552	3300011000	Soil	MDYQFERRESVDVSPGQAQPKYEKLVMREGRFYLQGTLPTGAPFSVQLGPSDASSEPPAR
Ga0138514_1000184983	3300011003	Soil	MDHEFERRESVDVSPGQAQPKYEKLVLREGRFYLQGTLPTGAPFSVQLGPSDASSEPPAR
Ga0151490_10375951	3300011107	Soil	MDYQFERRESVDVSPGQAQPKYEKLVMRDGRFYLQGTLPTGQPFSVQLGPSDASSEPHAR
Ga0137382_102626162	3300012200	Vadose Zone Soil	MDHEFEPRGAFETSERRAQPKYEKLVMRDGRFYLQGTLATGEPFSVQLGPSDASSEPPAR
Ga0137365_102680122	3300012201	Vadose Zone Soil	MDHEFEQDQPLDVSLARAQPRYEKLVMRGAGRFYLEGTSPTGEPFSVLLGPSDASSEPPPR*
Ga0137374_103198912	3300012204	Vadose Zone Soil	MDHQFEPESVDLSRPRSQPRYEKLVMRAGRFYLQRTLPTGEGFTVQLGPSDASSDPPSR*
Ga0137376_103706142	3300012208	Vadose Zone Soil	MDYQFERRESVEVSPGQAQPKYEKLVMRDGRFYLQGTLATGEPFSVQLGPSDASSEPPAR
Ga0150985_1173826632	3300012212	Avena Fatua Rhizosphere	MDHKFERRESVDVSPGQAQPKYEKLVMREGRFYLQGTLPTGASFSVQLGPSDASSEPPAR
Ga0137372_102870232	3300012350	Vadose Zone Soil	MDFEFEQDQPLDVSPVRAQPRYQKIVMRGAGRFYLEGTLPTGEPFSVRLGPSDASSDPPSR*
Ga0137372_105657803	3300012350	Vadose Zone Soil	MDHEFEQDQPLDVSLARAQPRYEKLVMRGAGRFYLEGTSPTGEPFSVLLGPSDASS
Ga0137369_107017032	3300012355	Vadose Zone Soil	MDHQFEPESVDLSRARSQPRYEKLVMREGRFYLQGTLPSGEGFTVQLGPSDASSDPPSR*
Ga0137375_103962882	3300012360	Vadose Zone Soil	MDYQFEPESVDLSRARSQPRYEKLVMREGRFYLQGTLPSGEGFTVQLGPSDASSDPPSR*
Ga0150984_1108819173	3300012469	Avena Fatua Rhizosphere	MDYEFDRREAVDVTPGQAQPKYEKLVMREGRFYLQGTLPTGASFSVQLGPSDASSEPPAR
Ga0157343_10056122	3300012488	Arabidopsis Rhizosphere	MDYEFEQGAAVEIGAGQRQPRYDRLVMRSGRFFLEGTLATGEPFSVQLGPSDPSSEPPAR
Ga0157345_10298241	3300012498	Arabidopsis Rhizosphere	GVRAQPKYEKLVMRGGRFYLEGTLPTGEPFSVQLGPSDPSSEPPAR*
Ga0157342_10492272	3300012507	Arabidopsis Rhizosphere	MDFEFDGGLDVSGVRAQPKYEKLVMRGGRFYLEGMLPTGEPFSVQLGPSDSSTAPPAR*
Ga0157303_101773982	3300012896	Soil	MDHEFQPHGALDVTEGRAQPKYEKLVMRGGRFYLEGTLPTGKPFSVQLGPSDSSTAPPAR
Ga0157286_100463853	3300012908	Soil	MESDFEHHKRLDVSGYAGQPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDASSDPPSR
Ga0157301_101660812	3300012911	Soil	MDHEFQPHGPLDVTEGRAQPKYEKLVMRGGRFYLEGTLPTGKPFSVQLGPSDSSTAPPAR
Ga0157302_103766802	3300012915	Soil	MDHEFQPHGALDVTKGRAQPKYEKLVMRGGRFYLEGTLPTGKPFSVQLGPSDSSTAPPVR
Ga0164301_108661292	3300012960	Soil	MDYQFERRGSVEVSPGQAQPKYEKLVMRDGRFYLQGTLPTGRPFSVQLGPSDASSEPPPR
Ga0164301_116942292	3300012960	Soil	MNPEFESNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPGGEPFTVQLGPSDASSEPAR*
Ga0164302_103258172	3300012961	Soil	MDYQFERRESVDVSPGQAQPKYEKLVMRGGRFYLEGSLPGGEPFTVQLGPSDASSEPAR*
Ga0164304_110627682	3300012986	Soil	MDFEFDGGLDVSGVRAQPKYEKLVMRGGRFYLEGTLPTGEAFSMQLGPSDASSDPPSR*
Ga0164307_113072332	3300012987	Soil	MDYQFKRRESVEVSPGQAQPKYEKLVMRDGRFYLEGTLPTGRPFSVQLGPSDASSEPPPR
Ga0164305_104425742	3300012989	Soil	MDYQFKRRESVEVSPGQAQPKYEKLVMRDGRFYLQGTLPTGRPFSVQLGPSDASSEPPPR
Ga0164305_113918772	3300012989	Soil	DQEFERYQPLGAAPGQAPKYDKLVMRDGRFYLQGRLPTGEPFSVQLGPSDSSSDPPSR*
Ga0163162_102125081	3300013306	Switchgrass Rhizosphere	GHAQPKYDSLVMRDGRLYLQGTLPTGQSFSVQLGPSDSSSDPPSR*
Ga0157375_118510322	3300013308	Miscanthus Rhizosphere	MDQEFERYQPLGAAPGQAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR*
Ga0157376_112554331	3300014969	Miscanthus Rhizosphere	TATLEFMKFEFEPHGALDPSEVRAQPKYEKLVMREGRFYLQGTLPTGAPFSVQLGPSDASSEPPAR*
Ga0132258_116811852	3300015371	Arabidopsis Rhizosphere	MNPEFEPHGALDVSEVRVQPKYEKLVMRGGRFYLEGTLPTGEPFSVQLGPSDSSTAPPAR
Ga0132256_1005050302	3300015372	Arabidopsis Rhizosphere	MDYEFEQGEAVEIGAGQRQPRYDRLVMRSGRFYLEGKLPDGEPFTVQLGPSDASSEPPAR
Ga0132257_1007407832	3300015373	Arabidopsis Rhizosphere	MDYEFEQGEAVEIGAGQRQPRYDRLIMRSGRFFLEGKLPDGEPFTVQLGPSDASSEPPAR
Ga0190266_105929682	3300017965	Soil	MDYQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Ga0184620_100120352	3300018051	Groundwater Sediment	MDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Ga0184621_100208502	3300018054	Groundwater Sediment	MDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQATLQTGEPFSVQLGPSDASSEPPAR
Ga0184619_103833841	3300018061	Groundwater Sediment	MDYEFEQDQPLEATPARAQPRYEKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0184619_105382701	3300018061	Groundwater Sediment	PIALQSGSMDYEFDQGEPLDVAAVRVQPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0184618_104205752	3300018071	Groundwater Sediment	MDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLATGEPFSVQLGPSDASSEPPAR
Ga0184625_102844171	3300018081	Groundwater Sediment	LESAVMDYEFEQHEPADPSRVRAQPKYDKLVMRDGRFYLQGTHPTGEPFSVQLGPSDASSDPPSR
Ga0173481_103263372	3300019356	Soil	MNPEFESNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPDGEPFTVQLGPSDASSEPAR
Ga0190267_102811782	3300019767	Soil	MDSEFEQDESRDVSGYRAQPKYDKLVMRDGRFYLQGTLPTGGRFSVQLGPSDPSSDPPSR
Ga0193701_10012653	3300019875	Soil	MDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLQTGEPFSVQLGPSDASSEPPAR
Ga0247786_11134092	3300022883	Soil	TPATLGSMNPEFESNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPDGEPFTVQLGPSDASSEPAR
Ga0247794_103109882	3300024055	Soil	HGALDVTEGRAQPKYEKLVMRGGRFYLEGTLPTGKPFSVQLGPSDSSTAPPAR
Ga0207656_102379722	3300025321	Corn Rhizosphere	MESDFEHHKRLDVSGYAAQPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGSSDASSDPPSR
Ga0207693_107878371	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDYQFERRESVDVSSGQAQPKYEKLVMREGRFYLQGTLPTGALFSVQLGPSDASSEPPAR
Ga0207663_104509722	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MDYQFERRESVDVSSGQAQPKYEKLVMREGRFYLQGTLPTGAPFSVQLGPSDASSEPPAR
Ga0207694_112194152	3300025924	Corn Rhizosphere	MDYELEQQRGAADRASVQAQPRYERLVMRAGRFYLEGSLPDGEPFTVQLGPSDASSEPAC
Ga0207711_115368031	3300025941	Switchgrass Rhizosphere	MDQEFERYQPLGAAPGQAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPS
Ga0207679_114260972	3300025945	Corn Rhizosphere	MESDFEHHKRLDVSGYAAQPKYDKLVMRDGRFYLQGTLPTGEPFSVQPGSSDASSDPPSR
Ga0207675_1008560322	3300026118	Switchgrass Rhizosphere	MDHEFEQRGRVEASAGQAQPKYDRLVMRDGRFYLQGTLPTGAPFSVQLGPSDSSSDPPSR
Ga0207698_110574822	3300026142	Corn Rhizosphere	MKFEFEPHGALDPSEVRAQPKYEKLVMREGRFYLEGTLPTGAPFSVQLGPSDASSEPPAR
Ga0247828_104556941	3300028587	Soil	LQSFAMDYEFEQQPGADRASAQAQPRYERLVMRAGRFYLEGSLPDGEPFTVQLGPSDASSEPAR
Ga0247820_105753062	3300028597	Soil	SRAMDSEFEQGEAVEIGAGQRQPRYDRLVMRSGRFFLEGKLPDGEPFTVQLGPSDASSEPPAR
Ga0307321_10817182	3300028704	Soil	MDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLQTGEPFSVQLGPSDASSEPPAR
Ga0307276_100245173	3300028705	Soil	MDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Ga0307291_10343741	3300028707	Soil	MDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLRTGEPFS
Ga0307291_11060752	3300028707	Soil	GRMDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLRTGEPFSVQLGPSDASSEPPAR
Ga0307322_100375362	3300028710	Soil	MDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLRTGEPFSVQLGPSDASSEPPAR
Ga0307315_100183261	3300028721	Soil	MDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLQTGEPFSVQLGPSDAS
Ga0307315_101359871	3300028721	Soil	PGQAQPKYEKLVMREGRFYLQGTLQTGEPFSVQLGPSDASSEPPAR
Ga0307319_100416343	3300028722	Soil	MDQEFERFQPLGASSGHAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0307319_102394222	3300028722	Soil	MDYEFEQHEPADPSRVRAQPKYDKLVMRDGRFYLQGTHPTGEPFSVQLGPSDSSSDPPSR
Ga0307318_101936142	3300028744	Soil	MDYEFEQHEPADPSRVRAQPKYDKLVMRDGRFYLQGMHPTGEPFSVQLGPSDSSSDPPSR
Ga0307318_102915691	3300028744	Soil	MNPEFEPHGALDVSEVRAQPKYEKLVMRGGRFYLEGTLPTGKPFSVQLGPSDSSTAPPAR
Ga0307316_103739782	3300028755	Soil	MDQEFERFQPLGATPGQAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0307320_101216502	3300028771	Soil	MDQEFERFQPLGASPGHAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0307288_100268453	3300028778	Soil	MDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLRTGEPFSVQLGPSDASSEPPAR
Ga0307323_102639941	3300028787	Soil	MDPEFEPHGALDVTPEGRAQPKYEKLVMRGGRFYLEGTLPTGASFSVQLGPSDASSKPPA
Ga0307323_103644321	3300028787	Soil	MNYEFEQHEPADPSRVRAQPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0307287_102462071	3300028796	Soil	FEQNEPADPSRVRAQPKYDKLVMRDGRFYLQGTHPTGEPFSVQLGPSDSSSDPPSR
Ga0307305_100871893	3300028807	Soil	RRESVDVSPGQAQPKYEKLVMREGRFYLQGTLQTGEPFSVQLGPSDASSEPPAR
Ga0307292_100395551	3300028811	Soil	GRMDHQFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Ga0247825_106635802	3300028812	Soil	MDHEFEQGEAVEIGAGQRQPRYDRLVMRSGRFFLEGKLPDGEPFTVQLGPSDASSEPPAR
Ga0307302_101617712	3300028814	Soil	MDYEFEQHDPADTSLGRAQPKYDKLVMRDGRFFLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0307296_104259661	3300028819	Soil	VGRMDYEFERRESVEVSPGQAQPKYEKLVMREGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Ga0307312_108463291	3300028828	Soil	MDYEFEQHDPADTSRGRAQPKYDKLVMRDGRFFLQGTLPTGEPFSVQLGPSDSSSDPPSR
Ga0307312_109153682	3300028828	Soil	MDYEFERRESVDVSPGQAQPKYEKLVMREGRFYLQGTLQTGEPFSVQLGPSDASSEPPAR
Ga0307314_101048062	3300028872	Soil	MEHQFERRESVEASPGQAQPKYEKLVMREGRFYLQGTLPTGQPFSVQLGPSDASSGPHAR
Ga0307289_100031793	3300028875	Soil	MDHQFERRESVEVSSGQAQPKYEKLVMREGRFYLQGTLRTGEPFSVQLGPSDASSEPPAR
Ga0307289_101958152	3300028875	Soil	VDISPGQAQPKYERLVMREGRFYLQGTLPTGASFSVQLGPSDASSEPPAR
Ga0307277_102407922	3300028881	Soil	MNPEFEPPGAFDVSEVRAQPKYEKLVMRGGRFYLEGTLPTGAPFSVQLGPSDASSEPPAR
Ga0307308_105210602	3300028884	Soil	MEYQFERRESVDVSSGQAQPKYEKLVMREGRFYLQGTLPTGAPFSVQLGRSDASSEPPAR
Ga0247827_111337942	3300028889	Soil	MDYEFEQQPGTADRASAQAQPRYERLVMRAGRFYLEGSLPDGEPFTVQLGPSDASSEPAR
Ga0308197_100564283	3300031093	Soil	MDQEFERFQPLGATPGQAPKYDKLVMRAGRFYLQGTLHTGEPFSVQLGPSDASSDPPSR
Ga0307501_100899282	3300031152	Soil	MDYQFERRESVDVTPGQAQPKYESLVMRDGRFYLQGTLPTGEPFSVQLGPSDASSEPPTR
Ga0307502_1000025316	3300031164	Soil	MDQEFERFQPLGATPGQAPKYDKLVMRDGRFYLQGTLPTGEPFSVQLGPSDASSDPPSR
Ga0307495_100833071	3300031199	Soil	MDYQFERRESVDVSPGQAQPKYEKLVMRDGRFYLQGTLPTGEPFSVQLGPSDASSEPPAR
Ga0308194_103691112	3300031421	Soil	MDYEFEQHEPLDVSGYRAQPKYDKLVMRAGRFYLQGTLHTGEPFSVQLGPSDSSSDPPSR
Ga0310900_114091472	3300031908	Soil	MNPEFESNGAFDVSEVRAQPKYEKLVMRGGRFYLEGSLPGGEPFTVQLGPSDASSEPAR
Ga0308175_1003257843	3300031938	Soil	MNPEFEPPGALDVSEARTQPHYEKLVMRGGRFYLEGTLPTGAPFSVQLGPSDSSTAPRAR
Ga0308174_102240142	3300031939	Soil	MNPEFEPPGGLDVSEARAQPKYEKLVMRGGRFYLEGTLPTGAPFSVQLGPSDSSTEPPAR
Ga0372946_0159581_810_992	3300034384	Soil	MDYEFEQQKPVDASAGQAQPKYEKLVMRAGRFYLQGTLPTGEPFSMQLGPSDSSSDPPSR
Ga0372946_0442097_77_259	3300034384	Soil	MDYEFERRESVEVSPGHAQPKYEKLVMREGRFYLEGTLPTGASFSVQLGPSDASSEPAPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085657

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences