Metagenome / Metatranscriptome Family F085599

Basic Information
Family ID	F085599
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	53 residues
Representative Sequence	MRKILDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKD
Number of Associated Samples	92
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	34.55 %
% of genes near scaffold ends (potentially truncated)	26.13 %
% of genes from short scaffolds (< 2000 bps)	63.96 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (88.288 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (10.811 % of family members)
Environment Ontology (ENVO)	Unclassified (46.847 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (48.649 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 12200260876 2JGI12421J11937_100140127 3JGI25908J49247_100938282 4Ga0049083_102986322 5Ga0049081_100094696 6Ga0049081_102529992 7Ga0049081_103043881 8Ga0049080_100039072 9Ga0078894_100168215 10Ga0078117_10850602 11Ga0079957_11796223 12Ga0073926_100050664 13Ga0073926_100057852 14Ga0073926_100618563 15Ga0073922_10413871 16Ga0075470_101312622 17Ga0075471_102409401 18Ga0075471_104437032 19Ga0070749_100535343 20Ga0075464_102785772 21Ga0075473_102478091 22Ga0099851_10198064 23Ga0099848_13351941 24Ga0102828_11526592 25Ga0102865_12449701 26Ga0105747_10160222 27Ga0114351_10285806 28Ga0114841_10171258 29Ga0114841_11635902 30Ga0105103_108173062 31Ga0105091_105687711 32Ga0114977_1000999311 33Ga0114978_105421673 34Ga0114981_102862382 35Ga0114966_100119609 36Ga0114975_100277172 37Ga0105102_101360394 38Ga0105097_102218733 39Ga0105096_100283536 40Ga0114979_108740582 41Ga0126448_10079803 42Ga0130030_10381822 43Ga0129333_100996523 44Ga0129333_113621982 45Ga0129324_103249831 46Ga0133913_100051817 47Ga0119931_10333623 48Ga0153801_10505473 49Ga0157596_10458821 50Ga0177922_111845492 51Ga0119954_10035396 52Ga0181365_10184992 53Ga0181352_11932352 54Ga0181355_13085501 55Ga0181359_12072942 56Ga0181359_12256462 57Ga0211733_102064902 58Ga0211729_111060259 59Ga0208362_10020178 60Ga0213922_11061531 61Ga0222714_100171099 62Ga0222714_102014422 63Ga0222714_102418112 64Ga0222712_1001297415 65Ga0222712_1002990110 66Ga0181353_10019848 67Ga0181354_10499372 68Ga0181354_10637871 69Ga0181354_10796472 70Ga0214917_100386372 71Ga0214921_1000161012 72Ga0214921_101644111 73Ga0255186_10241091 74Ga0208424_10498702 75Ga0208546_10667882 76Ga0208784_12588372 77Ga0209867_10146923 78Ga0209867_10595013 79Ga0255079_10355531 80Ga0208960_10706862 81Ga0208975_10002072 82Ga0208975_11607751 83Ga0209704_10634961 84Ga0209296_10725834 85Ga0209088_102626551 86Ga0209086_100148298 87Ga0209500_100018689 88Ga0209702_100184934 89Ga0247723_10108432 90Ga0247723_10883422 91Ga0315907_100097028 92Ga0315900_104472252 93Ga0315909_100391483 94Ga0315904_101895433 95Ga0315901_107303571 96Ga0315272_101700522 97Ga0315906_100908762 98Ga0334722_104417082 99Ga0316627_1022519791 100Ga0334982_0466151_45_206 101Ga0334992_0103062_1_153 102Ga0335003_0062328_1095_1265 103Ga0334985_0574536_490_633 104Ga0310127_026599_2985_3146 105Ga0310127_114644_380_541 106Ga0310130_0009450_191_352 107Ga0310130_0057519_186_347 108Ga0335010_0408845_467_628 109Ga0335012_0400104_1_138 110Ga0335027_0015575_2835_2996 111Ga0335060_0225851_905_1054
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 12200260876 2JGI12421J11937_100140127 3Ga0049083_102986322 4Ga0049081_103043881 5Ga0075471_104437032 6Ga0099851_10198064 7Ga0102865_12449701 8Ga0209702_100184934
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 12200260876 2JGI12421J11937_100140127 3Ga0049083_102986322 4Ga0049081_103043881 5Ga0075471_104437032 6Ga0099851_10198064 7Ga0102865_12449701 8Ga0209702_100184934
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.74% β-sheet: 20.75% Coil/Unstructured: 41.51%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF02557	VanY	26.13
PF03237	Terminase_6N	3.60
PF09588	YqaJ	3.60
PF01464	SLT	1.80
PF00436	SSB	0.90
PF02467	Whib	0.90
PF07691	PA14	0.90
PF00685	Sulfotransfer_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1876	LD-carboxypeptidase LdcB, LAS superfamily	Cell wall/membrane/envelope biogenesis [M]	26.13
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	26.13
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.90
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.10 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	2.70 %
Unclassified	root	N/A	0.90 %
Viruses	superkingdom	All Organisms → Viruses	96.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	88.29 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.11 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	88.29 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.11 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.11 %
Unclassified	root	N/A	0.90 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	88.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	88.29 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.11 %
Unclassified	root	N/A	0.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	18.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.11 %
Unclassified	root	N/A	0.90 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	15.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %
Freshwater phage uvFW-CGR-AMD-COM-C493	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	15.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.11 %
Unclassified	root	N/A	0.90 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	18.92 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352005\|2200043904	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	1899	Open in IMG/M
3300000756\|JGI12421J11937_10014012	All Organisms → Viruses → Predicted Viral	3037	Open in IMG/M
3300003277\|JGI25908J49247_10093828	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	728	Open in IMG/M
3300005580\|Ga0049083_10298632	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	539	Open in IMG/M
3300005581\|Ga0049081_10009469	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3694	Open in IMG/M
3300005581\|Ga0049081_10252999	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	618	Open in IMG/M
3300005581\|Ga0049081_10304388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	548	Open in IMG/M
3300005582\|Ga0049080_10003907	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5190	Open in IMG/M
3300005662\|Ga0078894_10016821	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5853	Open in IMG/M
3300005758\|Ga0078117_1085060	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	1183	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	88.29%
Terrestrial	Environmental → Terrestrial	11.71%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	5.41%
Freshwater	Environmental → Aquatic → Freshwater	67.57%
Marine	Environmental → Aquatic → Marine	19.82%
Soil	Environmental → Terrestrial → Soil	6.31%
Unclassified	Environmental → Aquatic → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	13.51%
Creek	Environmental → Aquatic → Freshwater → Creek	0.90%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.90%
Ice	Environmental → Aquatic → Freshwater → Ice	0.90%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.80%
Lake	Environmental → Aquatic → Freshwater → Lake	31.53%
Lentic	Environmental → Aquatic → Freshwater → Lentic	19.82%
Pond	Environmental → Aquatic → Freshwater → Pond	0.90%
River	Environmental → Aquatic → Freshwater → River	1.80%
Sand	Environmental → Terrestrial → Soil → Sand	5.41%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.41%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.80%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.80%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.90%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.90%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	29.73%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	17.12%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	13.51%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	9.91%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.80%
Drinking Water Treatment Plant	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant	0.90%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.80%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.50%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.90%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	3.60%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.81%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.41%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.50%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.80%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.80%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.90%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	9.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.91%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	7.21%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.41%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.70%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.70%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.90%
Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water	0.90%
Meromictic Pond	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond	0.90%
Meromictic Pond	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond	0.90%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	5.41%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352005	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300005758	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300005943	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_4-Nov-14	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2200260876	2199352005	Freshwater	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSVITLSQKDEK
JGI12421J11937_100140127	3300000756	Freshwater And Sediment	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD*
JGI25908J49247_100938282	3300003277	Freshwater Lake	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSIITLSQKDEK*
Ga0049083_102986322	3300005580	Freshwater Lentic	MKRILDYLVDNAWTWAGTGMVLITLSGPTLRQATFLTGAAIMVHSIITFTKKDKNE*
Ga0049081_100094696	3300005581	Freshwater Lentic	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSVITLSQKDEK*
Ga0049081_102529992	3300005581	Freshwater Lentic	MRKLLDYLTDNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD*
Ga0049081_103043881	3300005581	Freshwater Lentic	MKKILDYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVH
Ga0049080_100039072	3300005582	Freshwater Lentic	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVHSIITFTKKDDNE*
Ga0078894_100168215	3300005662	Freshwater Lake	MRKILDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD*
Ga0078117_10850602	3300005758	Lake Water	MKKLLDYLVDNAWTWAGTGMVLITLSGPTLRQAVFLTGVAIMVHSIITFSQKDN*
Ga0079957_11796223	3300005805	Lake	MKKLLNYLAENTWTWTGTGMVLITLSGPTFRQAVFLTGTAVVLHSIITLSQKDEK*
Ga0073926_100050664	3300005943	Sand	MRKLLDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGVVVLIHSSLTLSKKD*
Ga0073926_100057852	3300005943	Sand	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQATFLTGAAIMVHSIITFTKKDKNE*
Ga0073926_100618563	3300005943	Sand	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVFHSIITLSQKDEK*
Ga0073922_10413871	3300005955	Sand	KKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSVITLSQKDEK*
Ga0075470_101312622	3300006030	Aqueous	MRKIFDYLADNAWTWAGTGMVLITLSGPTLKQATLITGIAVLVHSILTLSKKD*
Ga0075471_102409401	3300006641	Aqueous	MRKILDYLIDNAWTWAGTGMVLITLSGPTLRQATLITGTVILVHSILTFSKKD*
Ga0075471_104437032	3300006641	Aqueous	MKKVLTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSVITLAQKDSD*
Ga0070749_100535343	3300006802	Aqueous	MRKFLDYLADNAWTWAGTGMVLITLSGPTLREATLITGTVVLVHSILTLSKKD*
Ga0075464_102785772	3300006805	Aqueous	MRKILDYLLDNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTLSKKDIE*
Ga0075473_102478091	3300006875	Aqueous	DNAWTWAGTGMVLITLSGPTLRQATLITGTVILVHSILTFSKKD*
Ga0099851_10198064	3300007538	Aqueous	MKKFASFLADNAWTYAGTGMVLITLSGPTLRQALLMTGVALIVHAAITLSQKD*
Ga0099848_13351941	3300007541	Aqueous	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGVAVVLHSLITLSQKDEK*
Ga0102828_11526592	3300007559	Estuarine	MRKILDYLADNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTLSKKDTE*
Ga0102865_12449701	3300007639	Estuarine	DNAWTYAGTGMVLITLSGPTLKQAILLTGVALVVHSVLTLGQKDS*
Ga0105747_10160222	3300007974	Estuary Water	MRKLLDYLLDNSWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD*
Ga0114351_10285806	3300008117	Freshwater, Plankton	MRKILDYLADNAWTWAGTGMVLITLSGPTLRQASLITGIVVLVHSSLTLSKKD*
Ga0114841_10171258	3300008259	Freshwater, Plankton	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQASLITGIVVLVHSSLTLSKKD*
Ga0114841_11635902	3300008259	Freshwater, Plankton	MRKLFDYLSDNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTFSKKD*
Ga0105103_108173062	3300009085	Freshwater Sediment	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKD*
Ga0105091_105687711	3300009146	Freshwater Sediment	ADNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD*
Ga0114977_1000999311	3300009158	Freshwater Lake	MRKLLDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSILTLSKKDTQ*
Ga0114978_105421673	3300009159	Freshwater Lake	MRKILDYLLDNSWTWAGTGMVLITLSGPTLQQATLITGIAVLVHSVLTLSKKD*
Ga0114981_102862382	3300009160	Freshwater Lake	MKKLLNYLAENTWTWAGTGMVLITLSGPTCRQAVFLTGTAVVLHSIITLSQKDEK*
Ga0114966_100119609	3300009161	Freshwater Lake	MRKILDYLLDNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTLSKKDTE*
Ga0114975_100277172	3300009164	Freshwater Lake	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQATFLTGTAIMVHSIITFTKKDKNE*
Ga0105102_101360394	3300009165	Freshwater Sediment	MRKILDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKD*
Ga0105097_102218733	3300009169	Freshwater Sediment	MRKFLDYLADNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSSLTLSKKD*
Ga0105096_100283536	3300009170	Freshwater Sediment	MRKILDYLADNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKD*
Ga0114979_108740582	3300009180	Freshwater Lake	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSIITLSQK
Ga0126448_10079803	3300009466	Meromictic Pond	MRKLSDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSILTLSKKD*
Ga0130030_10381822	3300009563	Meromictic Pond	MRKLSDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSILTHTHTHTHTH
Ga0129333_100996523	3300010354	Freshwater To Marine Saline Gradient	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGAAVVLHSVITLSQKDEK*
Ga0129333_113621982	3300010354	Freshwater To Marine Saline Gradient	MKKVLTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSIITLAQKDSD*
Ga0129324_103249831	3300010368	Freshwater To Marine Saline Gradient	RILDYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVHSIITFTKKDDNE*
Ga0133913_100051817	3300010885	Freshwater Lake	MRKILDYLLDNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKD*
Ga0119931_10333623	3300011984	Drinking Water Treatment Plant	MKKFVTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSIITLAQKDSD*
Ga0153801_10505473	3300012017	Freshwater	RFLSLLSDNAWTYAGTGMVLITLSGPTLKQAILLTGVALVVHSVLTLGQKDS*
Ga0157596_10458821	3300012702	Freshwater	DNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD*
Ga0177922_111845492	3300013372	Freshwater	MKKILDYLVDNAWTWAGTGMVLITLSGPTLRQAAFLTGMAIMVHSIITFSQKDN*
Ga0119954_10035396	3300014819	Freshwater	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAMFLTGTAVVLHSVITLSQKDEK*
Ga0181365_10184992	3300017736	Freshwater Lake	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGLAIMVHSIITFTKGDKNE
Ga0181352_11932352	3300017747	Freshwater Lake	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVHSIITFT
Ga0181355_13085501	3300017785	Freshwater Lake	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQASLITGIVVLVHSSLT
Ga0181359_12072942	3300019784	Freshwater Lake	VKKILDYLVDNAWTWAGTGMVLITLSGPTLRQATFLTGTAIMVHSIITFTKKDKNE
Ga0181359_12256462	3300019784	Freshwater Lake	MKKVLTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSVITLAQKDSD
Ga0211733_102064902	3300020160	Freshwater	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSSLTLSKKD
Ga0211729_111060259	3300020172	Freshwater	VKRILDYLVDNAWTWAGTGMVLITLSGPTFRQATFLTGAAIMVHSIITFTKKDNNE
Ga0208362_10020178	3300020558	Freshwater	VKKILDYLVDNAWTWAGTGMVLITLSGPTLRQATFLTGAAIMVHSIITFTKKDKNE
Ga0213922_11061531	3300021956	Freshwater	MRKFLDYILDNSWTWAGTGMVLITLSGPTLRQATLITGVVVLIHSILTFSK
Ga0222714_100171099	3300021961	Estuarine Water	VKKILDYLVDNAWTWAGTGMVLITLSGPTFRQAAFLTGVAIMVHSIITFSQKDNNE
Ga0222714_102014422	3300021961	Estuarine Water	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGVAVVLHSLITLSQKDEK
Ga0222714_102418112	3300021961	Estuarine Water	MKKLLDYLVDNAWTWAGTGMVLITLSGPTLRQAVFLTGVAIMVHSIITFSQKDN
Ga0222712_1001297415	3300021963	Estuarine Water	MRKILDYLIDNAWTWAGTGMVLITLSGPTLRQATLITGTVILVHSILTFSKKD
Ga0222712_1002990110	3300021963	Estuarine Water	MRKIFDYLSDNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTFSKKD
Ga0181353_10019848	3300022179	Freshwater Lake	VKKILDYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVHSIITFTKKDDNE
Ga0181354_10499372	3300022190	Freshwater Lake	MKRILDYLVDNAWTWAGTGMVLITLSGPTLRQATFLTGTAIMVHSIITFTKKDKNE
Ga0181354_10637871	3300022190	Freshwater Lake	MRKLLDYLTDNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSL
Ga0181354_10796472	3300022190	Freshwater Lake	VDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVHSIITFTKKDDNE
Ga0214917_100386372	3300022752	Freshwater	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAMFLTGTAVVLHSVITLSQKDEK
Ga0214921_1000161012	3300023174	Freshwater	MRKFLDYILDNSWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSILTLSKKDME
Ga0214921_101644111	3300023174	Freshwater	YLADNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTLSKKDTE
Ga0255186_10241091	3300024512	Freshwater	DYLVDNAWTWAGTGMVLITLSGPTFRQAVFLTGVAIMVHSIITFTKKDDNE
Ga0208424_10498702	3300025445	Aqueous	MRKIFDYLADNAWTWAGTGMVLITLSGPTLKQATLITGIAVLVHSILTLSKKD
Ga0208546_10667882	3300025585	Aqueous	MRKIFDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSILTLSKKD
Ga0208784_12588372	3300025732	Aqueous	MRKIFDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSIL
Ga0209867_10146923	3300027393	Sand	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQATFLTGAAIMVHSIITFTKKDKNE
Ga0209867_10595013	3300027393	Sand	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVFHSIITLSQKDEK
Ga0255079_10355531	3300027601	Freshwater	MKRILDYLVDNAWTWAGTGMVLITLSGPTLRQATFLTGTAIMV
Ga0208960_10706862	3300027649	Freshwater Lentic	MKKLLNYLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSIITLSQKDEK
Ga0208975_10002072	3300027659	Freshwater Lentic	MRKLLDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSILTLSKKD
Ga0208975_11607751	3300027659	Freshwater Lentic	NYLAENTWTWAGTGMVLITLSGPTFRQAMFLTGTAVVLHSVITLSQKDEK
Ga0209704_10634961	3300027693	Freshwater Sediment	LADNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSSLTLSKKD
Ga0209296_10725834	3300027759	Freshwater Lake	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQATFLTGTAIMVHSIITFTKKDKNE
Ga0209088_102626551	3300027763	Freshwater Lake	LMRKLLDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSILTLSKKDTQ
Ga0209086_100148298	3300027770	Freshwater Lake	MRKILDYLLDNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTLSKKDTE
Ga0209500_100018689	3300027782	Freshwater Lake	MRKLLDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSILTLSKKDTQ
Ga0209702_100184934	3300027976	Freshwater	MKRLANYILENSWTWAGTAMVLITLSGPTFKQALVITGVVVAVHLSISLTQGDST
Ga0247723_10108432	3300028025	Deep Subsurface Sediment	MRKLLDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSSLTLSKKD
Ga0247723_10883422	3300028025	Deep Subsurface Sediment	MRKILDYLVDNAWTWAGTGMVLITLSGPTLRQATLITGTVILVHSILTFSKKD
Ga0315907_100097028	3300031758	Freshwater	MRKILDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD
Ga0315900_104472252	3300031787	Freshwater	MKKVLTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSIITLAQKDSD
Ga0315909_100391483	3300031857	Freshwater	MRKLFDYLSDNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTFSKKD
Ga0315904_101895433	3300031951	Freshwater	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQASLITGIVVLVHSSLTLSKKD
Ga0315901_107303571	3300031963	Freshwater	YLAENTWTWAGTGMVLITLSGPTFRQAVFLTGTAVVLHSVITLSQKDEK
Ga0315272_101700522	3300032018	Sediment	MKRILDYLVDNAWTWAGTGMVLITLSGPTFRQATFLTGAAIMVHSI
Ga0315906_100908762	3300032050	Freshwater	MRKILDYLADNAWTWAGTGMVLITLSGPTLRQASLITGIVVLVHSSLTLSKKD
Ga0334722_104417082	3300033233	Sediment	MRKILDYLLDNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKDTE
Ga0316627_1022519791	3300033482	Soil	MKKVLTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSI
Ga0334982_0466151_45_206	3300033981	Freshwater	MRKFLDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIVVLVHSSLTLSKKD
Ga0334992_0103062_1_153	3300033992	Freshwater	YLVDNAWTWAGTGMVLITLSGPTLRQAAFLTGMAIMVHSIITFSQKDNNE
Ga0335003_0062328_1095_1265	3300033995	Freshwater	MKKILDYLVDNAWTWAGTGMVLITLSGPTLRQAAFLTGMAIMVHSIITFSQKDNNE
Ga0334985_0574536_490_633	3300034018	Freshwater	MKKILDYLVDNAWTWAGTGMVLITLSGPTLRQAAFLTGMAIMVHSIIT
Ga0310127_026599_2985_3146	3300034072	Fracking Water	MRKLFDYLADNAWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSILTLSKKD
Ga0310127_114644_380_541	3300034072	Fracking Water	MRKLLDYLADNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSILTLSKKD
Ga0310130_0009450_191_352	3300034073	Fracking Water	MRKLLDYLADNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSALTLSKKD
Ga0310130_0057519_186_347	3300034073	Fracking Water	MRKLLDYLADNAWTWAGTGMVLITLSGPTLRQAALITGIVVLVHSSLTLSKKD
Ga0335010_0408845_467_628	3300034092	Freshwater	MKKFLDYLADNAWTWAGTGMVLITLSGPTLRQATLITGVVVLVHSILTLSKKD
Ga0335012_0400104_1_138	3300034093	Freshwater	MKKVLTYLVDNAWTWAGTGMVLITLSGPTLRQATLITGFTILLHSV
Ga0335027_0015575_2835_2996	3300034101	Freshwater	MRKILDYLADNSWTWAGTGMVLITLSGPTLRQATLITGIAVLVHSVLTLSKKD
Ga0335060_0225851_905_1054	3300034122	Freshwater	LVDNAWTWAGTGMVLITLSGPTLRQATFLTGAAIMVHSIITFTKKDKNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085599

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences