Metagenome / Metatranscriptome Family F085501

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085501
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	52 residues
Representative Sequence	MNKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVIS
Number of Associated Samples	77
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.18 %
% of genes near scaffold ends (potentially truncated)	99.10 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (30.631 % of family members)
Environment Ontology (ENVO)	Unclassified (48.649 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.89% β-sheet: 0.00% Coil/Unstructured: 67.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF16277	DUF4926	5.41
PF13366	PDDEXK_3	4.50
PF13414	TPR_11	3.60
PF07883	Cupin_2	3.60
PF07721	TPR_4	2.70
PF13432	TPR_16	2.70
PF07638	Sigma70_ECF	2.70
PF04014	MazE_antitoxin	1.80
PF13424	TPR_12	1.80
PF13884	Peptidase_S74	0.90
PF01909	NTP_transf_2	0.90
PF00069	Pkinase	0.90
PF13711	DUF4160	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.60
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.70

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	78.38 %
Unclassified	root	N/A	4.50 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	78.38 %
Unclassified	root	N/A	4.50 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	68.47 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	5.41 %
Unclassified	root	N/A	4.50 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	4.50 %
Unclassified	root	N/A	4.50 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.90 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	4.50 %
Unclassified	root	N/A	4.50 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.90 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	4.50 %
Unclassified	root	N/A	4.50 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.90 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	68.47 %
Unclassified	root	N/A	4.50 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2.70 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.90 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102HQRAA	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
2170459005\|F1BAP7Q02F41T8	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300004463\|Ga0063356_100098808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3157	Open in IMG/M
3300005172\|Ga0066683_10180279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1302	Open in IMG/M
3300005174\|Ga0066680_10521954	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	747	Open in IMG/M
3300005178\|Ga0066688_10198069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1275	Open in IMG/M
3300005180\|Ga0066685_10331617	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1055	Open in IMG/M
3300005180\|Ga0066685_10710860	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	688	Open in IMG/M
3300005446\|Ga0066686_10936308	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	566	Open in IMG/M
3300005447\|Ga0066689_11039520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300005468\|Ga0070707_101412912	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	662	Open in IMG/M
3300005536\|Ga0070697_100618692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300005536\|Ga0070697_101150943	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300005540\|Ga0066697_10017091	All Organisms → cellular organisms → Bacteria	3876	Open in IMG/M
3300005552\|Ga0066701_10885377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	529	Open in IMG/M
3300005558\|Ga0066698_10387205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	963	Open in IMG/M
3300005558\|Ga0066698_10540521	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	791	Open in IMG/M
3300005558\|Ga0066698_10593677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	747	Open in IMG/M
3300005574\|Ga0066694_10152597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1096	Open in IMG/M
3300005575\|Ga0066702_10541265	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	705	Open in IMG/M
3300005576\|Ga0066708_10909310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300005598\|Ga0066706_10353924	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1164	Open in IMG/M
3300005598\|Ga0066706_11484272	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300005764\|Ga0066903_102612459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300006046\|Ga0066652_100204868	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300006791\|Ga0066653_10041930	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300006796\|Ga0066665_10157582	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1728	Open in IMG/M
3300006796\|Ga0066665_10424913	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300006796\|Ga0066665_10514285	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300006797\|Ga0066659_10876839	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300006797\|Ga0066659_11713446	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M
3300006800\|Ga0066660_10355538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1192	Open in IMG/M
3300009012\|Ga0066710_100688873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1557	Open in IMG/M
3300009012\|Ga0066710_101408078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1080	Open in IMG/M
3300009012\|Ga0066710_101484391	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1047	Open in IMG/M
3300009012\|Ga0066710_103103339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300009012\|Ga0066710_104697276	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300009090\|Ga0099827_10741652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	849	Open in IMG/M
3300009137\|Ga0066709_100751710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1408	Open in IMG/M
3300009137\|Ga0066709_102754047	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M
3300009137\|Ga0066709_103045177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	614	Open in IMG/M
3300009137\|Ga0066709_103433664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	575	Open in IMG/M
3300010333\|Ga0134080_10086435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1276	Open in IMG/M
3300010333\|Ga0134080_10265440	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300010333\|Ga0134080_10458345	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300010398\|Ga0126383_11528521	Not Available	757	Open in IMG/M
3300012189\|Ga0137388_11104471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	730	Open in IMG/M
3300012198\|Ga0137364_10704154	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300012201\|Ga0137365_10181819	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300012202\|Ga0137363_11119189	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300012202\|Ga0137363_11515888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300012205\|Ga0137362_10077641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2763	Open in IMG/M
3300012205\|Ga0137362_11711579	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300012206\|Ga0137380_10137261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2231	Open in IMG/M
3300012207\|Ga0137381_10184193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1807	Open in IMG/M
3300012208\|Ga0137376_10990330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	720	Open in IMG/M
3300012209\|Ga0137379_10916768	Not Available	781	Open in IMG/M
3300012211\|Ga0137377_11364995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	638	Open in IMG/M
3300012349\|Ga0137387_10259845	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300012349\|Ga0137387_10377233	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1028	Open in IMG/M
3300012350\|Ga0137372_10119608	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2185	Open in IMG/M
3300012350\|Ga0137372_10213358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1537	Open in IMG/M
3300012350\|Ga0137372_10309228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1223	Open in IMG/M
3300012350\|Ga0137372_10640596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	775	Open in IMG/M
3300012351\|Ga0137386_10453406	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300012351\|Ga0137386_10585813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	803	Open in IMG/M
3300012353\|Ga0137367_10086929	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300012354\|Ga0137366_10100009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2198	Open in IMG/M
3300012354\|Ga0137366_11171395	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	525	Open in IMG/M
3300012356\|Ga0137371_10949476	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300012357\|Ga0137384_10321667	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300012357\|Ga0137384_10493568	Not Available	1006	Open in IMG/M
3300012357\|Ga0137384_10607634	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	892	Open in IMG/M
3300012358\|Ga0137368_10042101	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	3976	Open in IMG/M
3300012358\|Ga0137368_10554857	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	734	Open in IMG/M
3300012359\|Ga0137385_10181557	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300012360\|Ga0137375_10286468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1498	Open in IMG/M
3300012975\|Ga0134110_10364206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300014157\|Ga0134078_10054483	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300015358\|Ga0134089_10522192	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300015373\|Ga0132257_100039391	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5195	Open in IMG/M
3300015373\|Ga0132257_103730691	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300015374\|Ga0132255_104098240	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	618	Open in IMG/M
3300016357\|Ga0182032_10896390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
3300018468\|Ga0066662_12097443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300018468\|Ga0066662_12885318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300018482\|Ga0066669_10508191	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300020006\|Ga0193735_1034387	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1543	Open in IMG/M
3300021080\|Ga0210382_10531269	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300025910\|Ga0207684_11090327	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
3300025922\|Ga0207646_10492385	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1105	Open in IMG/M
3300025922\|Ga0207646_10567130	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1020	Open in IMG/M
3300025922\|Ga0207646_10587472	Not Available	1000	Open in IMG/M
3300026306\|Ga0209468_1057948	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300026326\|Ga0209801_1332390	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	536	Open in IMG/M
3300026537\|Ga0209157_1230750	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
3300026538\|Ga0209056_10388741	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	873	Open in IMG/M
3300026540\|Ga0209376_1171911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1016	Open in IMG/M
3300026547\|Ga0209156_10082548	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300026547\|Ga0209156_10280711	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300026550\|Ga0209474_10612431	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300027846\|Ga0209180_10241873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1039	Open in IMG/M
3300028814\|Ga0307302_10709354	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300030846\|Ga0075403_11177273	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300031122\|Ga0170822_12812818	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300031231\|Ga0170824_102249428	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	684	Open in IMG/M
3300031231\|Ga0170824_126100288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300031446\|Ga0170820_14501822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300031469\|Ga0170819_12577075	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300031474\|Ga0170818_100705411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.40%
Host-Associated	Host-Associated	3.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.50%
Plants	Host-Associated → Plants	3.60%
Aquatic	Environmental → Aquatic	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.60%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.29%
Loam	Environmental → Terrestrial → Soil → Loam	7.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	43.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.41%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030846	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_01888800	2170459002	Grass Soil	MNKRKIKQQLRRAFFALAIAGALLTLPKAQAQPIPAFFH
E41_07487580	2170459005	Grass Soil	MKAKTRKGKFKKHRTNQTIKQQTAQRFFALATVGALLTLPKAQAQPVPAFFHSTDCER
Ga0063356_1000988084	3300004463	Arabidopsis Thaliana Rhizosphere	MNKPKTNQQLRRGFFALAMVAALLTLPETQAQPIPVSASSVDCEHVVSQQIVGSNTITILEITACF
Ga0066683_101802792	3300005172	Soil	MNKPRIKQQLRRGIFALAIIGALLTLPNAKARPMPASGSTTDC
Ga0066680_105219543	3300005174	Soil	MNKTKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGRNTIITLEITVC
Ga0066688_101980693	3300005178	Soil	MNKPKIKQQLRRAFFALAIVGALLTLPKAQAQPIPASGSTTDCEH
Ga0066685_103316171	3300005180	Soil	MNKPKIKQHLRRAFFALAIVGALLTLPNAQAQPIPASGSTTDCEHVISQR
Ga0066685_107108601	3300005180	Soil	MNKPKIKQQLRRGFFALAIFGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGGNTII
Ga0066686_109363082	3300005446	Soil	MNKTNIKQQLRRGFFALAIVGALLTLPKAQAQPIPATFNSTDCEHVISV
Ga0066689_110395202	3300005447	Soil	MNKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVIS
Ga0070707_1014129121	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MNKTKIKQQLRRGFFALAIVGALLTLPNAQAQPIPASGSTTDCEHVI
Ga0070697_1006186921	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKAKTTKGKFKNMNRPKIKQQLRRGFFALAIVGALLTLPQAQAQPIPASGSTTDCEHVIS
Ga0070697_1011509431	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNKPNIRQQLRKGFFALAIVGALLRLPNAQAAQLIPASGTTSDCEHVISQRTVGSNT
Ga0066697_100170919	3300005540	Soil	MNKPNIKQHLRRGFFALAIVGALLTLPKAQAQPVPAIFYST
Ga0066701_108853772	3300005552	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASG
Ga0066698_103872051	3300005558	Soil	MNKSKIKQHLRRNFFALAIVGALFTLPRAEAGPPIPATG
Ga0066698_105405211	3300005558	Soil	MDKPRIKQQLRRGFFALAIVGALLTVPKAQAQPIPASGSTTDCEHVISQRISGSNT
Ga0066698_105936771	3300005558	Soil	MDKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGGNTIITLEITACFH
Ga0066700_110620752	3300005559	Soil	MNKPKIKQHLRRGFFALAIVGALLTLPKAQAQPIPA
Ga0066694_101525972	3300005574	Soil	MNKPKIKQQLRRGFFALAIIGALFTLPNAKARPMPASGSTTDCEHVISQ
Ga0066702_105412651	3300005575	Soil	MNKTKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGST
Ga0066708_109093102	3300005576	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIP
Ga0066706_103539242	3300005598	Soil	MNKPKIKQQLRRAFFALAIVGPLLTLPNAQAAQLTPASGTTTDCEHVI
Ga0066706_114842721	3300005598	Soil	MDKPRIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRTAGPSTIIT
Ga0066903_1026124592	3300005764	Tropical Forest Soil	MNKTNIKQQLRRSFLALMILGALLTLPNAEAGPPVP
Ga0066652_1002048684	3300006046	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPATFNSTDCEHVISV
Ga0066653_100419301	3300006791	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPATFNSTDCEHVI
Ga0066665_101575821	3300006796	Soil	MNKPNIKQQLRRGFFALAIVSALLTLPKAQAQPIPASGDSTDCERVISVQSSGPNTIITLSETGC
Ga0066665_104249131	3300006796	Soil	MNKPKIKQQLRRAFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIIS
Ga0066665_105142851	3300006796	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRTAGPSTIITS
Ga0066659_108768391	3300006797	Soil	MNKPKIKQQLRRAFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRTVG
Ga0066659_117134462	3300006797	Soil	MNKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRTVG
Ga0066660_103555382	3300006800	Soil	MNTPKIKQHLRRGFFALAIVGALLTLPKAQAQPIPASGST
Ga0066710_1006888734	3300009012	Grasslands Soil	MNKTNIEQHLRRGCFALAIVGALFTLPNAEAGPPVPATFNSTDCEHVISQESRG
Ga0066710_1014080783	3300009012	Grasslands Soil	MNKPKIKQQLRRGFFALAIVGALFTLPNAEAGPPVPATFNSTDCEHVISQESRG
Ga0066710_1014843911	3300009012	Grasslands Soil	MNKPKIKQHLRRAFFALAIVGALLTLPNAQAQPIPASGSTTDCEHVISQRISGSNTIITLEIT
Ga0066710_1031033391	3300009012	Grasslands Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTT
Ga0066710_1046972761	3300009012	Grasslands Soil	MNKRRIKQPLLRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRT
Ga0099827_107416521	3300009090	Vadose Zone Soil	MNKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGGNTIITL
Ga0066709_1007517101	3300009137	Grasslands Soil	MNKPKIKQQLRRGFFALAIVGALLTLPQAQAQPIPATFNSTDCEHVISVQTVGRNTIITL
Ga0066709_1027540472	3300009137	Grasslands Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEH
Ga0066709_1030451771	3300009137	Grasslands Soil	MNKPRIKQQLRRGFFALAIVGALLTLPNAQAQPIPASGSTTDCEHVISV
Ga0066709_1034336641	3300009137	Grasslands Soil	MDKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTD
Ga0134080_100864352	3300010333	Grasslands Soil	MDKPRIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGST
Ga0134080_102654402	3300010333	Grasslands Soil	VKAKTREEKFKSMNKPKIKQQLRRSFFALAIVGALLTLPKAQAQPIPVSGSSTDCEHVISVQTVGPN
Ga0134080_104583452	3300010333	Grasslands Soil	MNKPRIKQQLRRGFFALAIIGALLTLPNAKARPMPASGSTTDCEHVISQQIFGSDTITILEITVC
Ga0126383_115285211	3300010398	Tropical Forest Soil	MNKTNIKQQRRRSFLALTIVGALFTLPNAEADAPVPATGTTTDCE
Ga0137388_111044712	3300012189	Vadose Zone Soil	MNKQNIKQQLRRAFFALAIVGALLTLPKAQAQPVPATFNSTDCEHVISVRTVGRNTIITL
Ga0137364_107041541	3300012198	Vadose Zone Soil	MNKQNIKQQLRRAFFALAIVGALFTLPKAQAAQPIPASGSSTDCEHVISQQSS
Ga0137365_101818191	3300012201	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPRAEAGPPIPATGYSIDCEHVISVQT
Ga0137363_111191892	3300012202	Vadose Zone Soil	MNKSKIKQHLRRNFFALAIVGALFTLPRAEAGPPIPATGYSIDCEHVISVQT
Ga0137363_115158881	3300012202	Vadose Zone Soil	MKAKTRKEKFKSMNKPRIEQHLRRGFFALAIVGALLPLPKAQAQPIPASGSTTDCEHVISVRTAGRNTI
Ga0137362_100776411	3300012205	Vadose Zone Soil	MNKQNIMQQLRRSFFALAIVGALFTLPNAQAGQPIPASGSTTDCEHVISQRSAGRNTIITLSITV
Ga0137362_117115791	3300012205	Vadose Zone Soil	MKAKTRKEKFKSMNKPKMKQHLRRGFFALAIVGALLPLPKAQAQPIPASGSTTDCEHVISVRTAGRNT
Ga0137380_101372611	3300012206	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHI
Ga0137381_101841935	3300012207	Vadose Zone Soil	MNKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPAT
Ga0137376_109903302	3300012208	Vadose Zone Soil	MNKPKIKQQLRRGFFALAIVGALLTLPQAQAQPIPATFNSTDCEHVISV
Ga0137379_109167681	3300012209	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRTV
Ga0137377_113649952	3300012211	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGS
Ga0137387_102598451	3300012349	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPATFNSTDCEHVISVRT
Ga0137387_103772331	3300012349	Vadose Zone Soil	MNKPNIKQQLRRNFFALAIVGALFTLPRAEAGPPIPATGYSIDCEHVISVQTVGPNTIITLSETG
Ga0137372_101196081	3300012350	Vadose Zone Soil	MNKTNIKQQLRRGFFALAIVGALLTLPKAQAQPVPAT
Ga0137372_102133581	3300012350	Vadose Zone Soil	MNKTKIKQQLRGGFFALAIVGALLTLPKAQAQPIPASGSTTDCEH
Ga0137372_103092283	3300012350	Vadose Zone Soil	MDKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIP
Ga0137372_106405962	3300012350	Vadose Zone Soil	MNKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTT
Ga0137386_104534061	3300012351	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPATFNSTDCEHVISVRTAGPSTIITLEITACLHETF
Ga0137386_105858131	3300012351	Vadose Zone Soil	MNKPKIKQQLRRAFFALAIVGPLLTLPNAQAAQLTPASGTTTDCEHVISVRTVGPN
Ga0137367_100869291	3300012353	Vadose Zone Soil	MKAKTRKGKFKNMNKTKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGP
Ga0137366_101000092	3300012354	Vadose Zone Soil	MKAKTRKENSKIMNKSKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDR
Ga0137366_111713951	3300012354	Vadose Zone Soil	MNKTKIKQQLRGGFFALAIVGALLTLPKAQAQPIPASGST
Ga0137371_109494762	3300012356	Vadose Zone Soil	MNKTNIKQQLRRGFFALAIVGALLTLPKAQAQPVPATFNSTDCEHVISVQ
Ga0137384_103216674	3300012357	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPVTGSSTDCEHIISVR
Ga0137384_104935681	3300012357	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRT
Ga0137384_106076341	3300012357	Vadose Zone Soil	MNKPNIKQHLRRSFFALAIIGALLTLPSADASTPINAQGSFTN
Ga0137368_100421014	3300012358	Vadose Zone Soil	MKAKTRKGKFKNMNKTKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAG
Ga0137368_105548571	3300012358	Vadose Zone Soil	MNKQNIKQQLRRAFFALAIVGALFTLPRAQADQPEPVSGSSTDCEHVISQESHGPNTIITLSITTCFHGT
Ga0137385_101815573	3300012359	Vadose Zone Soil	MNKPKIKQPLRRSFFALAIVGALLTLQKAQAQAIPPSGSTTDCEHVINVRTAGPT
Ga0137375_102864683	3300012360	Vadose Zone Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCE
Ga0134110_103642061	3300012975	Grasslands Soil	MKAKTTKGNSKNMNKPKIKQQLRRGFFALAIVGALLTLPQAQAQPIPARRSTTDCEH
Ga0134078_100544831	3300014157	Grasslands Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPVSGSSTDCEHVI
Ga0134089_105221922	3300015358	Grasslands Soil	MNKPNIKQQLRRGFFALAIVSALLTLPKAQAQPIPASGDSTDCEHVISVRTAGR
Ga0132257_1000393914	3300015373	Arabidopsis Rhizosphere	MKAKTRKKNSKNMNKPKIKQHLRRGFFALAIVGALLTLPKAQAQPIPATFHSTDCEHVISVQTVGPTTIITLSE
Ga0132257_1037306912	3300015373	Arabidopsis Rhizosphere	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPAIFHSTDCEHVISVQTV
Ga0132255_1040982401	3300015374	Arabidopsis Rhizosphere	MNKPKIKQQLRRGFFALAIVGALLTLPNAQAQPVPAFFHST
Ga0182032_108963901	3300016357	Soil	MNKSKIEQHLRRSFFALAIVGVLLALPNAQARPIPASGSSTDCEHVVSQQMVGSNTVT
Ga0066662_120974432	3300018468	Grasslands Soil	MDKPKIKQHLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEH
Ga0066662_128853181	3300018468	Grasslands Soil	MNKPKIKQQLRRAFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRT
Ga0066669_105081912	3300018482	Grasslands Soil	MNKQNIKQHPRRAFFALAMVGVLLALPSAQAQPIPATGSTTDCEHVISQRIAGSNTITTLEITVC
Ga0193735_10343873	3300020006	Soil	MNKTKIKQQLRGGFFALAIVGALSTLPKAQAQPIPASGSTT
Ga0210382_105312692	3300021080	Groundwater Sediment	MNKQNIKQQLRRAFFALAIVGALFTLPKAQADQPAPVSGSTTDCEHVISQQSSGPNTI
Ga0207684_110903272	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKAKTTKGKFKNMNKRRIKQQLRRSFFALAIIGALLTLPNAQAQPIPASGSTTDCEHV
Ga0207646_104923852	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNQPRIKQQLHRGFFALAIVGALLTLPNAQAQPIPASGSTTDCEHVISQQIFGSNTITIL
Ga0207646_105671303	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNKPNIKQHLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGRSTIITSSITTCFH
Ga0207646_105874723	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNKQNIMQQLRRSFFALAIVGALFTLPNAQAGQPIPASGSTT
Ga0209468_10579484	3300026306	Soil	MNKPNIKQQLRRGFFALAIIGALLTLPNAKARPMPASGSTTDCEHVIS
Ga0209801_13323901	3300026326	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPVSGSTTD
Ga0209157_12307501	3300026537	Soil	MNKTNIKQQLRRGFFALAIVGALLTLPKAQAQPIPATFNSTDCEHVISVQTVGRN
Ga0209056_103887412	3300026538	Soil	MDKPRIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHIISVRTAGPSTIITS
Ga0209376_11719112	3300026540	Soil	MNKPKIKQHLRRAFFALAIVGALLTLPNAQAQPIPASGSTTDCEHVISQRISGS
Ga0209156_100825481	3300026547	Soil	MNKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPAT
Ga0209156_102807112	3300026547	Soil	MDKPKIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCEHVISVRTAGPSTIIT
Ga0209474_106124312	3300026550	Soil	MNKPRIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDC
Ga0209180_102418732	3300027846	Vadose Zone Soil	MNNQNIKQQLRRGFFALAIVGALLTLPKAQAAAPIPASGSTADCEHVIS
Ga0307302_107093542	3300028814	Soil	MNKQNIKQQLRRAFFALAIVGALFTLPKAQADRPAPVSGSTTDCEHVISQESHGPNT
Ga0075403_111772732	3300030846	Soil	MNKPKIKQQLRRAFFALAIVGALFTLPRAEAGPPIPSTGYSIDCEH
Ga0170822_128128182	3300031122	Forest Soil	MSKPNIKQQLRRGFFALAIVGALLTLPKAQAQPIPASGSTTDCE
Ga0170824_1022494281	3300031231	Forest Soil	MNKPNNKQHLRRGFFALAIVGALLTLPQAQAQPIPATFNSTDCEHVISVQTVG
Ga0170824_1261002881	3300031231	Forest Soil	MNKPKIKQQLRRGFFALAIVGALLTLPQAQAQPIPADSRSIDCEHVISVQTAGPNTIITL
Ga0170820_145018221	3300031446	Forest Soil	MNKPKIKQQLRRGFFALAIVGALLTLPQAQAQPIPATFNSTDCEHVISVQTVGRNTIITLEETACFHG
Ga0170819_125770751	3300031469	Forest Soil	MNKPKIKQQLRRGFFALAIIGALLTLPKAQAQPLPAFFHSTDCEHVISVQTVGRNTIITLSETICLH
Ga0170818_1007054112	3300031474	Forest Soil	MNKPNIKQHLRRGFFALAIVGALLTLPKAQASPPVSASGIETDRECVIENVTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085501

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences