Metagenome / Metatranscriptome Family F085324

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085324
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	36 residues
Representative Sequence	MSMFRKVVLGAALVGLVAVLRKSVPDLARYFKIRQM
Number of Associated Samples	81
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.29 %
% of genes near scaffold ends (potentially truncated)	15.32 %
% of genes from short scaffolds (< 2000 bps)	80.18 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (95.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (28.829 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (31.532 % of family members)

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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1KansclcFeb2_15678680 2ICChiseqgaiiDRAFT_06782922 3Ga0058689_101193431 4Ga0058689_101801441 5Ga0062593_1016562351 6Ga0058697_101067012 7Ga0058697_101595832 8Ga0058697_105606721 9Ga0068861_1000437233 10Ga0081455_100471903 11Ga0081538_100067467 12Ga0081538_100151314 13Ga0081538_100158467 14Ga0081538_100217504 15Ga0081538_100490264 16Ga0081538_101083133 17Ga0081538_101138112 18Ga0081538_102658942 19Ga0081538_102929412 20Ga0081540_10300825 21Ga0081539_1000534214 22Ga0081539_100679803 23Ga0081539_102685592 24Ga0081539_103175702 25Ga0075428_1000121446 26Ga0075428_1009142914 27Ga0075431_1005223704 28Ga0075433_105751612 29Ga0075419_1000035216 30Ga0111539_101575934 31Ga0075418_115155172 32Ga0075418_123900342 33Ga0126307_100420094 34Ga0126307_101655954 35Ga0126313_101516073 36Ga0126315_102285323 37Ga0126315_106005242 38Ga0126315_106156051 39Ga0126315_109270541 40Ga0126314_107691093 41Ga0126311_113730462 42Ga0126377_101606193 43Ga0138513_1000026624 44Ga0157303_101062993 45Ga0162650_1000523663 46Ga0182000_100849453 47Ga0182000_104444942 48Ga0182000_105236612 49Ga0182001_101729633 50Ga0132258_1001687613 51Ga0190266_105455272 52Ga0184610_10094175 53Ga0184604_100340702 54Ga0184604_101301402 55Ga0184605_101378382 56Ga0184608_103332842 57Ga0184634_101365783 58Ga0184621_100113582 59Ga0184618_104866661 60Ga0184635_100640344 61Ga0184624_102031523 62Ga0184625_103059513 63Ga0190275_102476032 64Ga0190268_105316132 65Ga0190268_107048082 66Ga0190274_102404672 67Ga0184642_16204394 68Ga0190267_105894362 69Ga0193700_10695351 70Ga0210381_100614482 71Ga0222621_11075152 72Ga0193737_10300552 73Ga0224452_10458811 74Ga0207706_100127702 75Ga0207668_114282572 76Ga0208707_1020271 77Ga0209795_100850072 78Ga0209461_101710252 79Ga0209574_100735773 80Ga0209814_100003166 81Ga0268265_124603802 82Ga0307321_10821612 83Ga0307276_101475322 84Ga0307276_101981522 85Ga0307285_100765293 86Ga0307285_101215033 87Ga0307320_101408612 88Ga0307292_103107113 89Ga0307312_101066524 90Ga0307278_100150675 91Ga0307277_101559423 92Ga0268240_100249003 93Ga0268240_100449122 94Ga0268259_100523422 95Ga0268243_11298122 96Ga0268241_101508521 97Ga0268242_10240152 98Ga0308187_101849582 99Ga0307408_1000190644 100Ga0307408_1000246466 101Ga0307408_1004810842 102Ga0307405_108033292 103Ga0308175_1019940632 104Ga0307416_1029568951 105Ga0326721_102305813 106Ga0326721_102455903 107Ga0268251_102784881 108Ga0307471_1005605081 109Ga0334911_019099_833_940 110Ga0364943_0286824_182_292 111Ga0334905_058243_402_512
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1KansclcFeb2_15678680 2Ga0058689_101193431 3Ga0081538_101138112 4Ga0075418_123900342 5Ga0307285_101215033
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36 1Ga0182000_105236612 2Ga0058697_101067012 3Ga0058697_105606721 4Ga0081538_100490264 5Ga0081538_101083133 6Ga0081538_101138112 7Ga0081538_102658942 8Ga0081539_102685592 9Ga0075428_1000121446 10Ga0157303_101062993 11Ga0184634_101365783 12Ga0184618_104866661 13Ga0184635_100640344 14Ga0190268_107048082 15Ga0222621_11075152 16Ga0193737_10300552 17Ga0307276_101475322 18Ga0307278_100150675 19Ga0307277_101559423
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.56% β-sheet: 0.00% Coil/Unstructured: 48.44%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01750	HycI	33.33
PF01155	HypA	32.43
PF01455	HupF_HypC	16.22
PF01924	HypD	7.21
PF02769	AIRS_C	2.70
PF14659	Phage_int_SAM_3	0.90
PF00586	AIRS	0.90
PF07503	zf-HYPF	0.90
PF00730	HhH-GPD	0.90
PF01106	NifU	0.90

Showing 1 to 10 of 12 entries

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Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0680	Ni,Fe-hydrogenase maturation factor	Energy production and conversion [C]	33.33
COG0375	Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion	Posttranslational modification, protein turnover, chaperones [O]	32.43
COG0298	Hydrogenase maturation factor HybG, HypC/HupF family	Posttranslational modification, protein turnover, chaperones [O]	16.22
COG0409	Hydrogenase maturation factor HypD	Posttranslational modification, protein turnover, chaperones [O]	7.21
COG0068	Hydrogenase maturation factor HypF (carbamoyltransferase)	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.90
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.90
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.90
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.90

Showing 1 to 10 of 11 entries

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.50 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	93.69 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	90.09 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.24 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.60 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.90 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	16.22 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.60 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.90 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	16.22 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Microbispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora	1.80 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.60 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.90 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	1.80 %
Unclassified	root	N/A	4.50 %

Name	Rank	Taxonomy	Distribution
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.60 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.90 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1.80 %
Unclassified	root	N/A	4.50 %
unclassified Microbispora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → unclassified Microbispora	1.80 %

Name	Rank	Taxonomy	Distribution
Microbispora sp. ATCC PTA-5024	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → unclassified Microbispora → Microbispora sp. ATCC PTA-5024	1.80 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.60 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.90 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	1.80 %
Unclassified	root	N/A	4.50 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1209951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0678292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300004016\|Ga0058689_10119343	All Organisms → cellular organisms → Bacteria → Terrabacteria group	578	Open in IMG/M
3300004016\|Ga0058689_10180144	Not Available	506	Open in IMG/M
3300004114\|Ga0062593_101656235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	697	Open in IMG/M
3300005562\|Ga0058697_10106701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1169	Open in IMG/M
3300005562\|Ga0058697_10159583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300005562\|Ga0058697_10560672	Not Available	591	Open in IMG/M
3300005719\|Ga0068861_100043723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3364	Open in IMG/M
3300005937\|Ga0081455_10047190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microbispora → unclassified Microbispora → Microbispora sp. ATCC PTA-5024	3732	Open in IMG/M

Showing 1 to 10 of 111 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.36%
Host-Associated	Host-Associated	39.64%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	13.51%
Plants	Host-Associated → Plants	39.64%
Terrestrial	Environmental → Terrestrial	46.85%

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.80%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Phylloplane	Host-Associated → Plants → Phylloplane	5.41%
Phyllosphere	Host-Associated → Plants → Phyllosphere	3.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.41%
Roots	Host-Associated → Plants → Roots	8.11%
Sediment	Environmental → Aquatic → Sediment	11.71%
Soil	Environmental → Terrestrial → Soil	44.14%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.21%
Loam	Environmental → Terrestrial → Soil → Loam	0.90%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	3.60%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	8.11%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.71%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.90%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.71%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.21%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.41%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	3.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.41%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	3.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	9.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.50%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	8.11%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	5.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.90%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M

Showing 1 to 10 of 81 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_15678680	2124908045	Soil	MSMFRKVVLGAALVGLVAVLRKSMPDLARYLKIRSM
ICChiseqgaiiDRAFT_06782922	3300000033	Soil	MSMFRKVVLGAALVGLVAVLRKSMPDLARYLKIRSM*
Ga0058689_101193431	3300004016	Agave	DRRAREREGGMSMFRKVLLGAALVGLVALLRKSVPDVARYFKIRSM*
Ga0058689_101801441	3300004016	Agave	AHRRARERGGGMSMFRKVLLGAALVGLVAVLRKSVPDLARYFKIRSM*
Ga0062593_1016562351	3300004114	Soil	ADRRARERGGGMSMFRKVVLGAALVGLVAVLRKSMPDLARYLKIRSM*
Ga0058697_101067012	3300005562	Agave	MSMLRKLVLGAALVGLVALLRKSVPDVARYFKIRSM*
Ga0058697_101595832	3300005562	Agave	MSMFRKLVLGAALVGLVAVLRKSMPDLVRYLKIRSM*
Ga0058697_105606721	3300005562	Agave	MSMFRKVVLGAVLVGLVALLRKSAPDLARYLKIRSM*
Ga0068861_1000437233	3300005719	Switchgrass Rhizosphere	MSMFRKLALGAVLVGLVAVLRKQAPDLARYFRMRQM*
Ga0081455_100471903	3300005937	Tabebuia Heterophylla Rhizosphere	MSMFRKVLLGAALVGLVAILRKSVPDLARYFKIRQM*
Ga0081538_100067467	3300005981	Tabebuia Heterophylla Rhizosphere	MLRKVVLGAALVGLVAVLRKSVPDLARYFKIRSM*
Ga0081538_100151314	3300005981	Tabebuia Heterophylla Rhizosphere	MSMFRKVLLGAALVGLVAVLRKSVPDLARYFKIRQM*
Ga0081538_100158467	3300005981	Tabebuia Heterophylla Rhizosphere	MSMLRRVVLGAALVGLVALLRKSVPDLARYFKIRSM*
Ga0081538_100217504	3300005981	Tabebuia Heterophylla Rhizosphere	MSMFRKVLLGAVLVGLVAVLRKSVPDLARYFKIRQM*
Ga0081538_100490264	3300005981	Tabebuia Heterophylla Rhizosphere	MSMLRRVVLGAALVGLVAVLRKSVPDIARYLKIRSM*
Ga0081538_101083133	3300005981	Tabebuia Heterophylla Rhizosphere	MSMLRRLVVGAALLGLVAVLRKQVPDIARYLRIRSM*
Ga0081538_101138112	3300005981	Tabebuia Heterophylla Rhizosphere	MSMLRRLLVGAALVGLAAVLRKNAPDLARYFKIRQM*
Ga0081538_102658942	3300005981	Tabebuia Heterophylla Rhizosphere	MSMLRKAVIVAAVAGLVAVLRKSVPDLARYFKIRSM*
Ga0081538_102929412	3300005981	Tabebuia Heterophylla Rhizosphere	MSMFRKVALGAALVGLVAVLRKSVPDLARYFKIRQM*
Ga0081540_10300825	3300005983	Tabebuia Heterophylla Rhizosphere	MFRKVLLGAALVGLVAVLRKQVPDLARYFKIRQM*
Ga0081539_1000534214	3300005985	Tabebuia Heterophylla Rhizosphere	MSMFRKVVLGAALVGLVMVLRKSVPDLARYFKIRQM*
Ga0081539_100679803	3300005985	Tabebuia Heterophylla Rhizosphere	MSMFRKVVLGAVLVGLVAVLRKTAPDLARYFKIRQM*
Ga0081539_102685592	3300005985	Tabebuia Heterophylla Rhizosphere	MSMFRKLVLGAVLVGLVAVLRKNAPDLARYLRIRQM*
Ga0081539_103175702	3300005985	Tabebuia Heterophylla Rhizosphere	MSMFRKLVLGAALVGLVMVLRKSVPDLARYFKIRQM*
Ga0075428_1000121446	3300006844	Populus Rhizosphere	MSMFRKVVLGAVLVGLVAVLRKTAPDLARYIKIRQM*
Ga0075428_1009142914	3300006844	Populus Rhizosphere	MSMFRKLALGAALVGLVAVLRKQAPDLARYFRMRQM*
Ga0075431_1005223704	3300006847	Populus Rhizosphere	MSMVRRLVLFAALVGLVAVLRKQVPDLARYFKIRSM*
Ga0075433_105751612	3300006852	Populus Rhizosphere	MFRKLVLGAALVGLVAVLRKSMPDLVRYFKIRSM*
Ga0075419_1000035216	3300006969	Populus Rhizosphere	MSMFRRVVLGAVLVGLVAVLRKTAPDLARYIKIRQM*
Ga0111539_101575934	3300009094	Populus Rhizosphere	MFRKLALGAALVGLVAVLRKQAPDLARYFKMRQM*
Ga0075418_115155172	3300009100	Populus Rhizosphere	MSMVRRLVLFAALVGLVALLRKQVPDLARYFKIRSM*
Ga0075418_123900342	3300009100	Populus Rhizosphere	MFRKLALGAVLVGLVAVLRKQAPDLARYFRMRQM*
Ga0126307_100420094	3300009789	Serpentine Soil	MSMFRKVVLGAVLVGLVAVLRKSVPDLARYLKIRQM*
Ga0126307_101655954	3300009789	Serpentine Soil	MTMFRKLALGAVLVGLVAVLRKTAPDLARYFKMRQM*
Ga0126313_101516073	3300009840	Serpentine Soil	MSMVRKVVLGAVLVGLVAVVRKQLPDVVRYLKIRSM*
Ga0126315_102285323	3300010038	Serpentine Soil	MSMFRKVLLGAALVGLVAVLRKSMPDLARYLKIRSM*
Ga0126315_106005242	3300010038	Serpentine Soil	MSMVRKVLLGAVLVGLVAVLRKQLPDVVRYLKIRSM*
Ga0126315_106156051	3300010038	Serpentine Soil	SMFRKVLLGAALVGLVAVLRKSVLDLARYFKIRQM*
Ga0126315_109270541	3300010038	Serpentine Soil	GMSMFRKVVLGAALVGLVAVLRKSMPDLARYLKIRSM*
Ga0126314_107691093	3300010042	Serpentine Soil	SMVRKVLLGAVLVGLVAVLRKQLPDVVRYLKIRSM*
Ga0126311_113730462	3300010045	Serpentine Soil	MSMFRKVVLGAVLVGLVAVLRKSVPDLARYFKIRQM*
Ga0126377_101606193	3300010362	Tropical Forest Soil	MSMFRKLVLGAVLVGLVAVLRKNAPDLARYFKIRQM*
Ga0138513_1000026624	3300011000	Soil	MFRKLALGAVLVGLVAVLRKNAPDLARYFKMRQM*
Ga0157303_101062993	3300012896	Soil	MSMLRKLVLGAALVGLVAVLRKSMPDLVRYLKIRSM*
Ga0162650_1000523663	3300012939	Soil	MTMFRKLALGAVLVGLVAVLRKQAPDLARYFKMRQM*
Ga0182000_100849453	3300014487	Soil	MSMFRKVVLGAVLVGLVAVLRKQGPDLVRYFKIRSM*
Ga0182000_104444942	3300014487	Soil	MSMLRRVVLGAALVGLVAVLRKSVPDLARYFKIRQM*
Ga0182000_105236612	3300014487	Soil	MSMFRKVVLGAALVGLVAVLRKSVPDLARYFKIRQM*
Ga0182001_101729633	3300014488	Soil	MSMLRKVALGAALVGLVAVLRKSVPDLARYFKIRQM*
Ga0132258_1001687613	3300015371	Arabidopsis Rhizosphere	MFRKLALGAVLVGLVAVLRKQAPDLARYFKMRQM*
Ga0190266_105455272	3300017965	Soil	MSMLRRLVLLAALVGLVAVLRKQVPDLARYFKIRSM
Ga0184610_10094175	3300017997	Groundwater Sediment	MSMFRKLALGAVLVGLVAVLRKQAPDLARYFKMRQM
Ga0184604_100340702	3300018000	Groundwater Sediment	MSMFRKVLLGAALVGLVAVLRKQVPDVVRYLKIRSM
Ga0184604_101301402	3300018000	Groundwater Sediment	MTMFRKLALGAVLVGLVAVLRKNAPDLARYFKMRQM
Ga0184605_101378382	3300018027	Groundwater Sediment	MTMFRKLVLGAVLVGLVAVLRKQAPDLARYFKMRQM
Ga0184608_103332842	3300018028	Groundwater Sediment	MSMFRKVLLGAALVGLVAVLRKSVPDLARYFKIRSM
Ga0184634_101365783	3300018031	Groundwater Sediment	MSMFRKLALGAVLVGLVAVLRKNAPDLARYFKMRQM
Ga0184621_100113582	3300018054	Groundwater Sediment	MSMFRKLALGAVLVGLVAVLRKQAPDLARYLKMRQM
Ga0184618_104866661	3300018071	Groundwater Sediment	MSMFRKVLLGAALVGLVAVLRKQMPDVVRYLKIRSM
Ga0184635_100640344	3300018072	Groundwater Sediment	MSMVRRLVLGAALVGLVAVLRKQVPDLARYFKIRSM
Ga0184624_102031523	3300018073	Groundwater Sediment	MSMVRRLVLGAALVGLVVVLRKQVPDLARYFKIRSM
Ga0184625_103059513	3300018081	Groundwater Sediment	MSMVRRLVLFAALVGLVAVLRKQVPDLARYFKIRSM
Ga0190275_102476032	3300018432	Soil	MSMFRKVLLGAALVGLVAVLRKSVPDLARYFKIRQM
Ga0190268_105316132	3300018466	Soil	MSMVRRLVLFAALVGLVALLRKQVPDLARYFKIRSM
Ga0190268_107048082	3300018466	Soil	MSMVRKVVLGAVLVGLVAVLRKQLPDLVRYLKIRSM
Ga0190274_102404672	3300018476	Soil	MSMLRRLVLGAALVGLVVVLRKQVPDLARYFKIRSM
Ga0184642_16204394	3300019279	Groundwater Sediment	TMFRKLALGAVLVGLVAVLRKTAPDLARYFKMRQM
Ga0190267_105894362	3300019767	Soil	MRMFRKLALGAVLVGLVAVLRKQAPDLARYFRMRQM
Ga0193700_10695351	3300019873	Soil	MSMVRKVVLGAVLVGLVAVLRKQLPDVVRYLKIRSM
Ga0210381_100614482	3300021078	Groundwater Sediment	MSMFRKVVLGAVLVGLVAVLRKQLPDVVRYLKIRSM
Ga0222621_11075152	3300021510	Groundwater Sediment	MTMFRKLVLGAVLVGLVAVLRKQAPDLARYLKMRQM
Ga0193737_10300552	3300021972	Soil	MSMLRRLVVGAALVGLVAVLRKSIPDLARYFKIRQM
Ga0224452_10458811	3300022534	Groundwater Sediment	MSMFRKVLLGAALVGLVAVLRKSIPDLARYFKIRQM
Ga0207706_100127702	3300025933	Corn Rhizosphere	MSMFRKLALGAALVGLVAVLRKQAPDLARYFKMRQM
Ga0207668_114282572	3300025972	Switchgrass Rhizosphere	MSMFRKLALGAVLVGLVAVLRKQAPDLARYFRMRQM
Ga0208707_1020271	3300026699	Soil	RRARERGGGMSMFRKVVLGAALVGLVAVLRKSMPDLARYLKIRSM
Ga0209795_100850072	3300027718	Agave	MSMFRKVVLGAVLVGLVAVLRKQAPDLVRYFKIRSM
Ga0209461_101710252	3300027750	Agave	MSMFRKVVLGAVLVGLVALLRKSAPDLARYLKIRSM
Ga0209574_100735773	3300027809	Agave	MSMFRKLVLGAALVGLVAVLRKSMPDLVRYLKIRSM
Ga0209814_100003166	3300027873	Populus Rhizosphere	MSMFRKVVLGAVLVGLVAVLRKTAPDLARYIKIRQM
Ga0268265_124603802	3300028380	Switchgrass Rhizosphere	MSMFRKLALGTVLVGLVAVLRKQAPDLARYFRMRQM
Ga0307321_10821612	3300028704	Soil	MTMFRKLALGAVLVGLVAVLRKTAPDLARYFKMRQM
Ga0307276_101475322	3300028705	Soil	MSMFRKVLLGAALVGLVALLRKSVPDVARYLKIRQM
Ga0307276_101981522	3300028705	Soil	MSMFRKVLLGAALVGLVAVLRKQIPDLARYFKIRQM
Ga0307285_100765293	3300028712	Soil	MSMFRKLALGAVLVGLVAVLRKQAPDLARYFKMRQ
Ga0307285_101215033	3300028712	Soil	ADRRARERGGGMSMFRKLALGAVLVGLVAVLRKQAPDLARYLKMRQM
Ga0307320_101408612	3300028771	Soil	MSMFRKVVLGAALVGLVAVLRKSVPDLARYFRIRQM
Ga0307292_103107113	3300028811	Soil	RRARERGGGMSMVRKVVLGAVLVGLVAVLRKQLPDVVRYLKIRSM
Ga0307312_101066524	3300028828	Soil	MSMFRKLALGAVLVGLVAVLRKTAPDLARYFKMRQM
Ga0307278_100150675	3300028878	Soil	MSMFRKVVLGAALVGLVAVLRKTAPDLVRYFKIRSM
Ga0307277_101559423	3300028881	Soil	MSMFRKVVLGAALVGLIAVLRKSMPDLARYLKIRSM
Ga0268240_100249003	3300030496	Soil	MSMFRKLVLGAALVGLVAVLRKSIPDLARYLKIRSM
Ga0268240_100449122	3300030496	Soil	MSMFRKVVLGAALVGLVMVLRKSVPDLARYFKIRQM
Ga0268259_100523422	3300030499	Agave	MSMFRKLVLGAALVGLVAVLRKSMPDLARYLKIRSM
Ga0268243_11298122	3300030510	Soil	MSMFRKVVLGAVLVGLVAVLRKQGPDLVRYFKIRSM
Ga0268241_101508521	3300030511	Soil	MSMFRKVMLGAALVGLVALLRKSAPDLARYLKIRSM
Ga0268242_10240152	3300030513	Soil	MSMLRKVALGAALVGLVAVLRKSVPDLARYFKIRQM
Ga0308187_101849582	3300031114	Soil	MTMFRKLALGAVLVGLVAVLRKQAPDLARYLKMRQM
Ga0307408_1000190644	3300031548	Rhizosphere	MSMFRKVLLGAVLVGLVAVLRKSVPDLARYFKIRQM
Ga0307408_1000246466	3300031548	Rhizosphere	MSMFRKLVLGAALVGLVMVLRKSVPDLARYFKIRQM
Ga0307408_1004810842	3300031548	Rhizosphere	MSMVRKVLLGAVLVGLVAVLRKQLPDVVRYLKIRSM
Ga0307405_108033292	3300031731	Rhizosphere	MSMFRKVLLGAALVGLVAILRKSVPDLARYFKIRQM
Ga0308175_1019940632	3300031938	Soil	MSMFRKVLLGAALVALVAVLRKSVPDLARYFKIRSM
Ga0307416_1029568951	3300032002	Rhizosphere	GGGMSMFRKVLLGAVLVGLVAVLRKSVPDLARYFKIRQM
Ga0326721_102305813	3300032080	Soil	MSMFRKVVLGAALVGLVAVLRKSVPDLARYFKIRQM
Ga0326721_102455903	3300032080	Soil	MSMFRKVVLGAVLVGLVAVLRKSVPDLARYFKIRQM
Ga0268251_102784881	3300032159	Agave	MSMLRKLVLGAALVGLVALLRKSVPDVARYFKIRSM
Ga0307471_1005605081	3300032180	Hardwood Forest Soil	GGMSMFRKLALGAVLVGLVAVLRKQAPDLARYFKMRQM
Ga0334911_019099_833_940	3300034131	Sub-Biocrust Soil	MSMFRKVVLGAALVGLVALLRKSVPDVARYFKIRSM
Ga0364943_0286824_182_292	3300034354	Sediment	MSMVRRLVLLAALVGLVAVLRKQVPDLARYFKIRSM
Ga0334905_058243_402_512	3300034687	Soil	MSMFRKVLLGAALVGLVAVLRKSMPDLARYFKIRSM

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