NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F085305

Metagenome / Metatranscriptome Family F085305

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F085305
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 97 residues
Representative Sequence SGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Number of Associated Samples 96
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 77.27 %
% of genes near scaffold ends (potentially truncated) 30.63 %
% of genes from short scaffolds (< 2000 bps) 72.97 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.099 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.820 % of family members)
Environment Ontology (ENVO) Unclassified
(22.523 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(32.432 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140
1JGI10216J12902_1007975542
2JGI10216J12902_1057630212
3JGI10216J12902_1104224852
4C688J18823_101265983
5C688J35102_1186518161
6soilL1_100933185
7soilH2_101711662
8Ga0055471_100056113
9Ga0055468_101294782
10Ga0055489_100006202
11Ga0055489_100017464
12Ga0066599_1003513351
13Ga0063356_1000205967
14Ga0063356_1002496483
15Ga0062595_1012004592
16Ga0062591_1012451771
17Ga0062383_102840843
18Ga0062381_101383813
19Ga0062594_1004982691
20Ga0070660_1003982792
21Ga0070684_1005472592
22Ga0068853_1011097072
23Ga0068859_1021779481
24Ga0066905_1008118562
25Ga0075287_10132521
26Ga0075291_10242492
27Ga0075421_1000768015
28Ga0075421_1004671383
29Ga0075429_1019455101
30Ga0079218_102296493
31Ga0066710_1024319761
32Ga0075418_123665592
33Ga0114129_104412823
34Ga0105092_102547151
35Ga0105070_11306301
36Ga0105239_132626582
37Ga0134122_116988242
38Ga0127502_109246592
39Ga0136618_104158592
40Ga0137374_105662571
41Ga0150985_1048065092
42Ga0150985_1212105112
43Ga0136615_100307613
44Ga0136613_103475611
45Ga0157308_102449421
46Ga0137404_116825582
47Ga0164298_100526284
48Ga0075312_10313392
49Ga0075327_11850261
50Ga0075342_10897681
51Ga0173480_110587401
52Ga0173478_107754581
53Ga0132256_1020889432
54Ga0183260_102969694
55Ga0136617_100241358
56Ga0184610_13118151
57Ga0184615_1000078412
58Ga0184637_100530054
59Ga0184609_101872572
60Ga0184609_102085901
61Ga0190265_100301774
62Ga0190265_102811831
63Ga0190265_104128432
64Ga0190272_119015331
65Ga0190268_107423072
66Ga0190268_112457551
67Ga0190264_105637171
68Ga0187893_100994941
69Ga0196977_10092943
70Ga0210378_100186875
71Ga0247786_11106922
72Ga0210087_10056513
73Ga0207690_100272554
74Ga0207706_112311752
75Ga0207679_108060391
76Ga0210116_10084732
77Ga0210102_100015917
78Ga0208777_10116271
79Ga0207676_125889412
80Ga0207698_127457961
81Ga0209966_11353232
82Ga0209819_101739361
83Ga0209464_101196741
84Ga0209382_100652273
85Ga0247820_113670292
86Ga0307299_102953052
87Ga0247824_110913291
88Ga0299907_101000204
89Ga0299907_113276331
90Ga0268386_100936783
91Ga0268386_101851523
92Ga0302046_100809662
93Ga0302046_101069821
94Ga0308197_101718021
95Ga0308199_10782922
96Ga0299913_101799434
97Ga0310887_107700062
98Ga0307408_1001115356
99Ga0307408_1009869702
100Ga0310813_100619433
101Ga0307405_105827672
102Ga0307413_102431632
103Ga0214473_102103743
104Ga0307416_1000602584
105Ga0315910_100197243
106Ga0307471_1032276662
107Ga0214471_112774062
108Ga0247829_113843722
109Ga0247829_115461662
110Ga0364926_059205_211_516
111Ga0364942_0002111_4313_4618
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.32%    β-sheet: 9.45%    Coil/Unstructured: 73.23%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090SGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGRSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
99.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Groundwater Sediment
Wetland Sediment
Soil
Polar Desert Sand
Freshwater
Natural And Restored Wetlands
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Soil
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Soil
Soil
Natural And Restored Wetlands
Rice Paddy Soil
Soil
Tropical Forest Soil
Corn Rhizosphere
Groundwater Sand
Soil
Microbial Mat On Rocks
Sediment
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Populus Rhizosphere
Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
4.5%6.3%4.5%19.8%4.5%5.4%4.5%3.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10079755423300000956SoilVAPSGRKRGKPVEPRGREARLRSEFGYLYPGIDAGSWTPVESLINQVVTLLYGDPSKSGVITGSRLLREDHFEFRGASPRPQGWPDGLSRMSDASAAPKDTR*
JGI10216J12902_10576302123300000956SoilVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPAKSGVITGERLLREDHFEFRGQSSRPTGWPSSLSRMSDAAAKPPGKE*
JGI10216J12902_11042248523300000956SoilVASSGRKRGKPMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAKSGVITGGRLLREDHFEFRGASPRPKGWPDGLSRMSDASAAPKDSR*
C688J18823_1012659833300001686SoilVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEPGSWTPVESLINQVVTLLYGDSSKSGVITGSRLLREDHFEFRGSSPRPKGWPEELSRMSDASAAPKDGH*
C688J35102_11865181613300002568SoilVASSGRKRGKPVEPRGREARLRSEFGYLYPGIDAGTWTPVESLINQVVTLLYGDPSQSGVITGSRLLREDHFEFRGASPRPQGWPDGLSRMSDASAAPKDAR*
soilL1_1009331853300003267Sugarcane Root And Bulk SoilVAGSGRKRGKAIEPRGREARLRAEFGYLYPGIAAGEWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGRSPRPEGWPDGLSRMSDASAAPKDGG*
soilH2_1017116623300003324Sugarcane Root And Bulk SoilVAGSGRKRGKAIEPRGREARLRAEFGYLYPGIAAGEWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGRSPRPEGWPDGLSRMSDASAAPKDGG
Ga0055471_1000561133300003987Natural And Restored WetlandsVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0055468_1012947823300003993Natural And Restored WetlandsVNARQSGPARSAQARGREARLRADFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPANSGRITGARLLRDDHFEFRGASPRPEGWPERLTRMSDASAPPDPS*
Ga0055489_1000062023300004145Natural And Restored WetlandsMTTPRGRQARLRAEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPSQSGVITGERLLREDHFEFRGESTRPTGWPSALSRMSDAAAKPRADGR*
Ga0055489_1000174643300004145Natural And Restored WetlandsMAPRGREARLRSEFGYLYPGIEPGSWVSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPEGWPSDLSRMSDASAEPKDGK*
Ga0066599_10035133513300004282FreshwaterLRADFAYLYPGIDETAWMPVEALINRVVTMLYGDPGSSGRITGARLLREDHFEFRGASPRPEGWPSGLSRMSDAAAPPDR*
Ga0063356_10002059673300004463Arabidopsis Thaliana RhizosphereMTTPRGRQARLRPEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPARSGVITGERLLREDHFEFRGESHRPSGWPSTMSRMSDAAAKPRAEDR*
Ga0063356_10024964833300004463Arabidopsis Thaliana RhizosphereVAGSARKRGKSIEPRGREARLKSEFGYLYPGIEAGEWVPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGRSPRPAGWPKGLSRMSDASAAPKDGR*
Ga0062595_10120045923300004479SoilVASSGRKRGKPMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR*
Ga0062591_10124517713300004643SoilEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0062383_1028408433300004778Wetland SedimentTAEMTTPRGRQAKLRAEHAYLYPGIDADVWTPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSHRPTGWPSTMSRMSDAATKPRADDR*
Ga0062381_1013838133300004808Wetland SedimentMTTPRGRQAKLRAEHAYLYPGIDADVWTPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSHRPTGWPSTMSRMSDAATKPRADD
Ga0062594_10049826913300005093SoilMLVHPDDVRLCDRQEISDAGGAPVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPAKSGVITGERLLRDDHFEFRGQSSRPSGWPSSLSRMSDAAAKPPGKE*
Ga0070660_10039827923300005339Corn RhizosphereVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0070684_10054725923300005535Corn RhizosphereVASSGRKRGKPMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASA
Ga0068853_10110970723300005539Corn RhizosphereVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGQ*
Ga0068859_10217794813300005617Switchgrass RhizosphereGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0066905_10081185623300005713Tropical Forest SoilVASSGRKRGKAMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGW
Ga0075287_101325213300005873Rice Paddy SoilVAGSARKRGKAIEPRGREARLRSEFGYLYPGIEAGAWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGSSPRPQGWPDSLSRMSDASAAPKDER*
Ga0075291_102424923300005884Rice Paddy SoilGKAIEPRGREARLRTEFGYLYPGIEAGAWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGSSPRPQGWPDSLSRMSDASAAPKDER*
Ga0075421_10007680153300006845Populus RhizosphereVSARQSAHAKPVQVRGREARLRADFAYLYPGLDSSDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG*
Ga0075421_10046713833300006845Populus RhizosphereVSARQSGPGRSPEARGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPQGWPERLTRMSDASTPPDPS*
Ga0075429_10194551013300006880Populus RhizosphereLRADFAYLYPGLDSSDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG*
Ga0079218_1022964933300007004Agricultural SoilVSARQSGPAKPAQARGREARLKTDFAYLYPGLESADWTPVEVLINRVVTLLYGDPANSGRITGARLLRDDHFEFRGASPRPEGWPARLTRMSDASAPPDPS*
Ga0066710_10243197613300009012Grasslands SoilMKSKASEVRGREARLRADFDYLYPGVQANTWVPVERLIHDVVTLLYGDGSKSGVITGERLLREDHFEFRGLSPRPLGLPPNRSRVSDSGAFPASDKKSPD
Ga0075418_1236655923300009100Populus RhizosphereVNARQSGAGRPAPARGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGARLLRDDHFEFRGASARPEGWPERLTRMSDASAEPDPS*
Ga0114129_1044128233300009147Populus RhizosphereMSSGPKEARGRQARLRSDFDYLYPGIQANTWLPVERLVQDVITLLYGDAGKSGGITGERLLREDHFEFRGSSPRPKGLPPHRSRLNDSSAVRRSDKKS*
Ga0105092_1025471513300009157Freshwater SedimentVTPPRGRQARLKAEHAYLYPGIEASSWMPVETLIHRVVTLLYGDPAKSGVITGERLLREDHFEFRGQSSRPTGWPTSLSRMSDAAAKPPGKDGSGKSA*
Ga0105070_113063013300009815Groundwater SandVSARQPAHANKPAPTRGREARLKADFAYLYPGLDATDWTPVETLINRIVTLLYGDPANSGRITGARLLREDHFEFRGVSPRPEGWPAGLTRMSDAASPPDRS*
Ga0105239_1326265823300010375Corn RhizosphereVEPRGREARLRSEFGYLYPGIEPGSWTPVESLINQVVTLLYGDASKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRM
Ga0134122_1169882423300010400Terrestrial SoilMSSGPKEARGRQARLRPDFDYLYPGIPVNTWFPVERLIQDVVTLLYGDAGKSGGIKGERLLREDHFEFRGSSRRPKGLPPNRSRLNDSSAVRRSDKKS*
Ga0127502_1092465923300011333SoilVSARQSSQGSAAESRGREARLKSDFAYLYPGLDAGVWTPVEVLINRVVTLLYGDPGNSGRITGARLLREDHFEFRGASPRPDGWPTGLSRMSDAAAPPDRG*
Ga0136618_1041585923300012188Polar Desert SandMTQRRGREARLKADHGYLYPGIPADTWTPVEVLINRVVTLLYGDRSKSGVITGERLLREDHFDFRGASSRPRGLPADLSRLSDAAADPD*
Ga0137374_1056625713300012204Vadose Zone SoilMETRGREARLRQEFDYLYPGIPDSTWMPVEVLLHRVATLLYGDPSKSGVITGERLLRQDHFEFRGASPRPEGLPPDLSRMSDSGLEPKG*
Ga0150985_10480650923300012212Avena Fatua RhizosphereVEPRGREARLRSEFGYLYPGIDAGTWTPVESLINQVVTLLYGDPSQSGVITGGRLLREDHFEFRGASPRPQGWPDGLSRMSDASAAPKDAR*
Ga0150985_12121051123300012212Avena Fatua RhizosphereLSIRTTFRLCDRQEISDAGGAPVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSSRLTGWPSSLSRMSDAAAKSPGKE*
Ga0136615_1003076133300012678Polar Desert SandVTSPRGRQARLRAEHAYLYPGLEPAVWMPVETLIHRVVTLLYGDPAKSGVITGERLLRGDHFEFRGQSSRPTGWPSALSRMSDAAAKPRGSDESDSQG*
Ga0136613_1034756113300012681Polar Desert SandMTQRRGREARLKADHGYLYPGIPADTWTPVEVLINRVVTLLYGDRSKSGVITGERLLREDHFEFRGASYRPRGLPADLSRLSDAAADPD*
Ga0157308_1024494213300012910SoilKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR*
Ga0137404_1168255823300012929Vadose Zone SoilVNDPRGREARLRPEYDYLYPDIEPGAWHPVEVLINQVVTMLYGDRTRSGVITGERLLRDDHFEFRGESPRPAGLPPDLSRMS
Ga0164298_1005262843300012955SoilMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR*
Ga0075312_103133923300014254Natural And Restored WetlandsVSARQSGPGRSPETRGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPEGWPERLTRMSDASTPPEPS*
Ga0075327_118502613300014272Natural And Restored WetlandsLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPEGWPERLTRMSDASTPPEPS*
Ga0075342_108976813300014320Natural And Restored WetlandsMAPRGREARLRSEFGYLYPGIEPGSWVSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPPPDGWPPDLSRMSDASADQQ
Ga0173480_1105874013300015200SoilVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDA
Ga0173478_1077545813300015201SoilVSARKSGPGQSPETRGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS*
Ga0132256_10208894323300015372Arabidopsis RhizosphereMLVHPDDVRLRDRQEISDAGGAPVTPPRGRQARLKAEHAYLYPGIEASTWMPVETLIHRVVTLLYGDPAKSGVITGERLLRDDHFEFRGQSSRPSGWPSSLSRMSDAAAKPPGKE*
Ga0183260_1029696943300017787Polar Desert SandMTQRRGREARLKADHGYLYPGIPADNWTPVEVMINRMVTLLYGDRSKSGVITGERLLREDHFDFRGASSRPRGLPADLSRLSDAAADPD
Ga0136617_1002413583300017789Polar Desert SandMTQRRGREARLKADHGYLYPGIPADTWTPVEVLINRVVTLLYGDRSKSGVITGERLLREDHFDFRGASSRPRGLPADLSRLSDAAADPD
Ga0184610_131181513300017997Groundwater SedimentVSARQSAHAKPAQLRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAGPPDKG
Ga0184615_10000784123300018059Groundwater SedimentVSTRQTAPAKPARTRGREARLRTDFAYLYPGIDSGAWTPVEILINRVVTLLYGDAANSGRITGARLLREDHFEFRGASPRPEGWPSGLTRMSDAAAPPDRG
Ga0184637_1005300543300018063Groundwater SedimentVSARQSAHAKPAQLRGREARLKADFEYLYPGLDSTGWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASARPEGWPAGLTRMSDAAAPPDKG
Ga0184609_1018725723300018076Groundwater SedimentVSARQSAQAKPAQMRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAASPPDRG
Ga0184609_1020859013300018076Groundwater SedimentPGSVVTTAANSWSHRLSIWRRSRVSARQSAQAKPTQARGREAKLRTDFAYLYPGIDSSAWTPVEILINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPARLTRMSDAAAPPDRG
Ga0190265_1003017743300018422SoilVSARQSGPAKPAQARGREARLRTDFGYLYPGIDSGAWMPVESLINRVVTLLYGDPGNSGRITGARLLRQDHFEFRGASPRPEGWPVGLTRMSDAAAPPDRR
Ga0190265_1028118313300018422SoilVSARQSGPAKPAQARGREARLKTEFAYLYPGLESTAWTPVEALINQVVTLLYGDPANAGRITGARLLREDHFEFRGASPRPEGWPEGLTRMSDAAAPPDRS
Ga0190265_1041284323300018422SoilVSARQSGPAKPAQTRGREARLKSDFAYLYPGLETTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPERS
Ga0190272_1190153313300018429SoilVSARQSAQAKPAPARGREAKLKTDFAYLYPGIDSSAWTPVEDLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAASPPDRG
Ga0190268_1074230723300018466SoilMTTPRGRQARLRPEHAYLYPGLDAEVWTPVETLIHRVVTMLYGDPSKSGVITGERLLREDHFEFRGESHRPSGWPSTMSRMSDAAAKPRADER
Ga0190268_1124575513300018466SoilPPRGRQAKLRAEHAYLYPGIEANVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGQSHRPTGWPSTMSRMSDAAAKPRADER
Ga0190264_1056371713300019377SoilVSARQSGPAKPAQTRGREARLKSDFAYLYPGLETTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRM
Ga0187893_1009949413300019487Microbial Mat On RocksVNPRQPAQAKPAQTRGREARVRADFAYLYPGIESAAWTPVEVLINRVVTLLYGDAAKAGRITGGRLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPDQG
Ga0196977_100929433300020146SoilMTPPRGRQARLRAEHAYLYPGLEAGVWTPVETLIHRVVTMLYGDPSKSGVITGERLLREDHFEFRGESHRPAGWPSTMSRMSDAAAKPRADDR
Ga0210378_1001868753300021073Groundwater SedimentVSARQSAHAKPAQPRGREARLRADFAYLYPGLDASAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDKS
Ga0247786_111069223300022883SoilVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0210087_100565133300025559Natural And Restored WetlandsVSARQSGPGRSPETRGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASPRPEGWPERLTRMSDASTPPEPS
Ga0207690_1002725543300025932Corn RhizosphereVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0207706_1123117523300025933Corn RhizosphereKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0207679_1080603913300025945Corn RhizosphereSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0210116_100847323300025959Natural And Restored WetlandsMTTPRGRQARLRAEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPSQSGVITGERLLREDHFEFRGESTRPTGWPSALSRMSDAAAKPRADGR
Ga0210102_1000159173300025971Natural And Restored WetlandsMAPRGREARLRSEFGYLYPGIEPGSWVSVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPEGWPSDLSRMSDASAEPKDGK
Ga0208777_101162713300025996Rice Paddy SoilVAGSARKRGKAIEPRGREARLRSEFGYLYPGIEAGAWVPVESLINQVVTLLYGDPDKSGVITGSRLLREDHFEFRGSSPRPQGWPDSLSRMSDASAAPKDER
Ga0207676_1258894123300026095Switchgrass RhizosphereVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPK
Ga0207698_1274579613300026142Corn RhizosphereVASSGRKRGKPMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLRGDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR
Ga0209966_113532323300027695Arabidopsis Thaliana RhizosphereVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDG
Ga0209819_1017393613300027722Freshwater SedimentPPRGRQARLKAEHAYLYPGIEASSWMPVETLIHRVVTLLYGDPAKSGVITGERLLREDHFEFRGQSSRPTGWPTSLSRMSDAAAKPPGKDGSGKSA
Ga0209464_1011967413300027778Wetland SedimentMTTPRGRQAKLRAEHAYLYPGIDADVWTPVETLIHRVVTLLYGDPSKSGVITGERLLREDHFEFRGQSHRPTGWPSTSTRRSFWICSAAALPMRTGPSPR
Ga0209382_1006522733300027909Populus RhizosphereVSARQSAHAKPVQVRGREARLRADFAYLYPGLDSSDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG
Ga0247820_1136702923300028597SoilARQSGPGRSPETRGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS
Ga0307299_1029530523300028793SoilMEPRGREARLRSEFDYLYPGVPDSTWMPVEALLHRVATLLYGDPSKSGVITGERLLREDHFEFRGASARPEGLPPDLSRMSDSGLEPKG
Ga0247824_1109132913300028809SoilIWRRSRVSARKSGPGQSPETRGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS
Ga0299907_1010002043300030006SoilVSARQTGPAKPAQARGREARLKTDFAYLYPGLESTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPDQG
Ga0299907_1132763313300030006SoilVSARQSAQAKPAQARGREARLRTDFAYLYPGIDASAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPDGWPAGLTRMSDAAAPPDRG
Ga0268386_1009367833300030619SoilVSARQAGPAKPAQARGREARLRPDFAYLYPGIDSGWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPSGLTRMSDAAAPPDRG
Ga0268386_1018515233300030619SoilMTTPRGRQARLREEHAYLYPGIDAATWTPVETLIHRVVTMLYGDPSRSGVITGERLLREDHFEFRGESSRPSGWPSALSRMSDAAAKPRAEDR
Ga0302046_1008096623300030620SoilVSGRQSAHAKPARGREARLRADFAYLYPGLDSTDWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAAPPERG
Ga0302046_1010698213300030620SoilVSARQSAPAKPAQLRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAGPPDKG
Ga0308197_1017180213300031093SoilSLGERTTVMEPRGREARLRSEFDYLYPGVPDNTWMPVEALLHRVATLLYGDPSKSGVITGERLLREDHFEFRGASARPEGLPPDLSRMSDSGLEPKG
Ga0308199_107829223300031094SoilTVMEPRGREARLRSEFDYLYPGVPDSTWMPVEALLHRVATLLYGDPSKSGVITGERLLREDHFEFRGASARPEGLPPDLSRMSDSGLEPKG
Ga0299913_1017994343300031229SoilVSARQTGPAKPAQVRGREARLKTDFAYLYPGLETTAWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSPRPEGWPAGLTRMSDAAAPPDRT
Ga0310887_1077000623300031547SoilVASSGRKRGKAMEPRGREARLRSEFGYLYPGIDAGTWTPVEALINQVVTLLYGDPAQSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAAPKDSR
Ga0307408_10011153563300031548RhizosphereMTTPRGRQARLRAEHAYLYPGIEPDVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGDSHRPTGWPSSMSRMSDAAAKPRAEDR
Ga0307408_10098697023300031548RhizosphereVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGTWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSRMSDASAAPKDGR
Ga0310813_1006194333300031716SoilVASSGRKRGKPMESRGREARLKSEFGYLYPGIDAGAWTPVEALINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGASPRPKGWPDGLSRMSDASAEPKDSR
Ga0307405_1058276723300031731RhizosphereVSARQSGPAKSAQARGREARLKTDFAYLYPGLESADWTPVEVLINRVVTLLYGDPANAGRITGARLLREDHFEFRGSSERPEGWPEGLTRMSDAAAPPDRS
Ga0307413_1024316323300031824RhizosphereMTTPRGRQARLLAEHAYLYPGIEPDVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGDSHRPTGWPSSMSRMSDAAAKPRAEDR
Ga0214473_1021037433300031949SoilMTSPRGRQARLRTDHAYLYPGIEAGVWTPVETLIHRVVTLLYGDPSKSGVITGDRLLREDHFEFRGESSRPLGWPSALSRMSDAAAKPTTEDR
Ga0307416_10006025843300032002RhizosphereMTTPRGRQARLRAEHAYLYPGIEADVWTPVETLIHRVVTMLYGDPAKSGVITGERLLREDHFEFRGDSHRPTGWPSSMSRMSDAAAKPRAEDR
Ga0315910_1001972433300032144SoilVNARQSGAGRPAPARGREARLRTEFGYLYPGLEAGVWTPVEVLINRVVTLLYGDPSNSGRITGARLLRDDHFEFRGASARPEGWPERLTRMSDASAEPDPS
Ga0307471_10322766623300032180Hardwood Forest SoilMSSGPKEARGRQARLRPDFDYLYPGIPVNTWFPVERLIQDVVTLLYGDAGKSGGITGERLLREDHFEFRGSSPRPKGLPPNRS
Ga0214471_1127740623300033417SoilTAANSWSNRLSIWRRSRVSARQSAHAKPAQLRGREARLKADFEYLYPGLDSTAWTPVETLINRVVTLLYGDPANSGRITGARLLREDHFEFRGASARPEGWPAGLTRMSDAAAPPDKG
Ga0247829_1138437223300033550SoilVSARKSGPGQSPETRGREARLRTEFGYLYPGLEAGAWTPVEVLINRVVTLLYGDPSNSGRITGSRLLREDHFEFRGASARPEGWPEGLTRMSDASTPPEPS
Ga0247829_1154616623300033550SoilVASSGRKRGKAVEPRGREARLRSEFGYLYPGIEAGSWTPVESLINQVVTLLYGDPAKSGVITGSRLLREDHFEFRGSSPRPKGWPEALSR
Ga0364926_059205_211_5163300033812SedimentVSARQSAQAKPAQTRGREARLKTDFAYLYPGIESGAWTPVERLISRVVTLLYGDPVKSGRITGARLLREDHFEFRGASPRPEGWPAGLTRMSDAAAPPDRS
Ga0364942_0002111_4313_46183300034165SedimentVSTRQTGPAKPARTRGREARLRTDFAYLYPGIDSGAWTPVEILINRVVTLLYGDAANSGRITGARLLREDHFEFRGASPRPEGWPSGLTRMSDAAAPPDRG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.