Metagenome / Metatranscriptome Family F085279

Basic Information
Family ID	F085279
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	55 residues
Representative Sequence	QVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Number of Associated Samples	98
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.83 %
% of genes near scaffold ends (potentially truncated)	95.50 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Bacteria (57.658 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.631 % of family members)
Environment Ontology (ENVO)	Unclassified (36.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (28.829 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.52% β-sheet: 16.05% Coil/Unstructured: 65.43%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00072	Response_reg	66.67
PF01627	Hpt	18.92
PF07194	P2	9.01
PF01584	CheW	2.70
PF14332	DUF4388	0.90
PF04509	CheC	0.90
PF01546	Peptidase_M20	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0643	Chemotaxis protein histidine kinase CheA	Signal transduction mechanisms [T]	18.02

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	16.22 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	3.60 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	16.22 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	3.60 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	3.60 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
Veillonellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3.60 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	1.80 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.90 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	1.80 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.90 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
bacterium JGI 053	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3.60 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1.80 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.90 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_118174421	Not Available	536	Open in IMG/M
3300003322\|rootL2_10261657	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1043	Open in IMG/M
3300003997\|Ga0055466_10126708	Not Available	715	Open in IMG/M
3300004022\|Ga0055432_10245408	Not Available	526	Open in IMG/M
3300004153\|Ga0063455_100293690	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300005337\|Ga0070682_100328197	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300005341\|Ga0070691_10907488	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005445\|Ga0070708_100876650	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300005458\|Ga0070681_10056550	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3904	Open in IMG/M
3300005468\|Ga0070707_100151807	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	2256	Open in IMG/M
3300005468\|Ga0070707_101289826	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300005536\|Ga0070697_101770292	Not Available	553	Open in IMG/M
3300005544\|Ga0070686_100494982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	948	Open in IMG/M
3300005546\|Ga0070696_100800627	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300005546\|Ga0070696_101761247	Not Available	535	Open in IMG/M
3300005618\|Ga0068864_100808201	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300005885\|Ga0075284_1039391	Not Available	639	Open in IMG/M
3300005886\|Ga0075286_1029086	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300006852\|Ga0075433_11840865	Not Available	520	Open in IMG/M
3300006880\|Ga0075429_100795701	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300007004\|Ga0079218_12260643	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300009082\|Ga0105099_10673646	Not Available	640	Open in IMG/M
3300009100\|Ga0075418_12171893	Not Available	605	Open in IMG/M
3300009168\|Ga0105104_10130966	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1353	Open in IMG/M
3300009823\|Ga0105078_1068012	Not Available	500	Open in IMG/M
3300010045\|Ga0126311_10235332	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1352	Open in IMG/M
3300010371\|Ga0134125_10894295	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	975	Open in IMG/M
3300010371\|Ga0134125_12366429	Not Available	578	Open in IMG/M
3300010371\|Ga0134125_12504045	Not Available	561	Open in IMG/M
3300011003\|Ga0138514_100019443	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300012045\|Ga0136623_10115785	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300012208\|Ga0137376_10961257	Not Available	732	Open in IMG/M
3300012362\|Ga0137361_10893319	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300012681\|Ga0136613_10459662	Not Available	692	Open in IMG/M
3300012911\|Ga0157301_10054258	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300012930\|Ga0137407_10733429	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300012938\|Ga0162651_100089871	Not Available	518	Open in IMG/M
3300012989\|Ga0164305_11977223	Not Available	531	Open in IMG/M
3300015372\|Ga0132256_101989956	Not Available	687	Open in IMG/M
3300017997\|Ga0184610_1138183	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300018028\|Ga0184608_10001725	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6464	Open in IMG/M
3300018066\|Ga0184617_1165630	Not Available	654	Open in IMG/M
3300018070\|Ga0184631_10179822	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300018079\|Ga0184627_10349792	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300018429\|Ga0190272_10380128	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300018429\|Ga0190272_13180238	Not Available	511	Open in IMG/M
3300018466\|Ga0190268_10092661	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1375	Open in IMG/M
3300018466\|Ga0190268_11536036	Not Available	581	Open in IMG/M
3300018469\|Ga0190270_10929116	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300018920\|Ga0190273_11917291	Not Available	545	Open in IMG/M
3300019865\|Ga0193748_1011879	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300020060\|Ga0193717_1126070	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300021078\|Ga0210381_10061741	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300021184\|Ga0196959_10205664	Not Available	507	Open in IMG/M
3300021418\|Ga0193695_1014290	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1619	Open in IMG/M
3300025318\|Ga0209519_10668022	Not Available	564	Open in IMG/M
3300025324\|Ga0209640_10295681	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1354	Open in IMG/M
3300025324\|Ga0209640_10540929	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300025537\|Ga0210061_1040749	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300025537\|Ga0210061_1067028	Not Available	619	Open in IMG/M
3300025917\|Ga0207660_11133246	Not Available	637	Open in IMG/M
3300025927\|Ga0207687_10774294	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300025944\|Ga0207661_11041031	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300025959\|Ga0210116_1018829	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1277	Open in IMG/M
3300026028\|Ga0208420_1013914	Not Available	688	Open in IMG/M
3300026032\|Ga0208419_1037323	Not Available	558	Open in IMG/M
3300026095\|Ga0207676_10740693	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	955	Open in IMG/M
3300026116\|Ga0207674_10257584	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1692	Open in IMG/M
3300026812\|Ga0207518_100819	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	855	Open in IMG/M
3300027036\|Ga0207467_1018162	Not Available	583	Open in IMG/M
3300027775\|Ga0209177_10367214	Not Available	568	Open in IMG/M
3300027792\|Ga0209287_10274632	Not Available	645	Open in IMG/M
3300027882\|Ga0209590_11041222	Not Available	509	Open in IMG/M
3300027907\|Ga0207428_10227039	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1398	Open in IMG/M
3300027956\|Ga0209820_1231420	Not Available	517	Open in IMG/M
3300028715\|Ga0307313_10077739	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300028716\|Ga0307311_10121131	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300028771\|Ga0307320_10072433	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1289	Open in IMG/M
3300028771\|Ga0307320_10089121	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300028787\|Ga0307323_10132552	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300028793\|Ga0307299_10213750	Not Available	725	Open in IMG/M
3300028807\|Ga0307305_10430990	Not Available	595	Open in IMG/M
3300028819\|Ga0307296_10091228	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300028819\|Ga0307296_10761796	Not Available	528	Open in IMG/M
3300028828\|Ga0307312_10190061	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300028872\|Ga0307314_10140004	Not Available	692	Open in IMG/M
3300028878\|Ga0307278_10175144	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300028884\|Ga0307308_10084030	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	1511	Open in IMG/M
3300030620\|Ga0302046_10882490	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300030620\|Ga0302046_11082389	Not Available	634	Open in IMG/M
3300031093\|Ga0308197_10433956	Not Available	522	Open in IMG/M
3300031094\|Ga0308199_1078249	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300031095\|Ga0308184_1028129	Not Available	642	Open in IMG/M
3300031114\|Ga0308187_10445203	Not Available	521	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1104422	Not Available	693	Open in IMG/M
3300031424\|Ga0308179_1028112	Not Available	654	Open in IMG/M
3300031548\|Ga0307408_100130228	All Organisms → cellular organisms → Bacteria	1961	Open in IMG/M
3300031824\|Ga0307413_11632437	Not Available	573	Open in IMG/M
3300031852\|Ga0307410_10645969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	887	Open in IMG/M
3300031901\|Ga0307406_10037618	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300031903\|Ga0307407_10017736	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	3581	Open in IMG/M
3300031903\|Ga0307407_10076007	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300031903\|Ga0307407_10142351	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1548	Open in IMG/M
3300031943\|Ga0310885_10663298	Not Available	583	Open in IMG/M
3300031995\|Ga0307409_101176114	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300032002\|Ga0307416_100005798	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	7656	Open in IMG/M
3300033412\|Ga0310810_10143406	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium JGI 053	2785	Open in IMG/M
3300033551\|Ga0247830_10416740	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300034681\|Ga0370546_065035	Not Available	588	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.88%
Host-Associated	Host-Associated	17.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.57%
Plants	Host-Associated → Plants	17.12%
Aquatic	Environmental → Aquatic	15.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.51%
Freshwater	Environmental → Aquatic → Freshwater	6.31%
Marine	Environmental → Aquatic → Marine	4.50%
Sediment	Environmental → Aquatic → Sediment	4.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.70%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.80%
Rhizome	Host-Associated → Plants → Rhizome	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.14%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.50%
Sand	Environmental → Terrestrial → Soil → Sand	2.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.70%
Ice	Environmental → Aquatic → Freshwater → Ice	1.80%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.80%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.81%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.80%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.80%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.80%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.90%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	8.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.31%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.60%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.70%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.70%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.90%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.90%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005885	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401	Environmental	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019865	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s1	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025959	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026028	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026032	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026812	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes)	Environmental	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1181744211	3300002568	Soil	GLGVGQVLDFLEVPAGSVVERRDLPGVDPRLVKAVGLNADQHFILLDVDALFAPIIGA*
rootL2_102616572	3300003322	Sugarcane Root And Bulk Soil	VVLEVKGRHYGLGVGQVLDFLEVPAASVVERRELPGVDPRLVKAVGLGANQHFILLDVDALFAPIIGG*
Ga0055466_101267081	3300003997	Natural And Restored Wetlands	CGLDVGGVIDFLEVPAASVAQRADLPGIDPRLVKAVGVQDGRHFILLDIDALVAPIIGS*
Ga0055432_102454081	3300004022	Natural And Restored Wetlands	LEVPEHAVAQRADLPGIDPRLVRAVGVHEGRHFIVLDVDALMAPIIGT*
Ga0063455_1002936903	3300004153	Soil	GVGQVLDFLEVPAGAVVERRELPGVDPRLVKAVGLEADRHFILLDVEAAFAPIIGG*
Ga0070682_1003281973	3300005337	Corn Rhizosphere	ERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ*
Ga0070691_109074882	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VAGRRYGLGVGQVLDFLEVPEESVAERAELPGVDPRLVKAVGLRDDRPFILLDIDRLLETIVGG*
Ga0070708_1008766501	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG*
Ga0070681_100565505	3300005458	Corn Rhizosphere	LAVGQVLDFLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ*
Ga0070707_1001518073	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	EVPEQSIAERADLPGIDPRLVKAVGMRDGQHFILLDVDALVAPIIGS*
Ga0070707_1012898263	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG*
Ga0070697_1017702922	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	FLEVPGHAVAQRSDLPGIDPRLVKAVGVRDGQHFILLDIDALVAPIIGS*
Ga0070686_1004949821	3300005544	Switchgrass Rhizosphere	VVLEVKGKAYGLGVGQVLDFLEVPAASVVERRELPGVDPRLVKAVGLESNRHFILLDVEAVFAPIIGS*
Ga0070696_1008006273	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	FLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGA*
Ga0070696_1017612472	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LDVKGRSYGLGVGQVLDFLEVPAAAVVERRELPGVDPRLVKAVGMDADRHFILLDVEAAFAPIIGG*
Ga0068864_1008082013	3300005618	Switchgrass Rhizosphere	EVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ*
Ga0075284_10393912	3300005885	Rice Paddy Soil	FLEVPAASVAAQADLPGIDPRLVKAVGVHDGRHFILLDIDALVAPIIGS*
Ga0075286_10290863	3300005886	Rice Paddy Soil	LEVPEASVAQQTELPGIDPRLVKAVGVHDGRHFILLDIDALVAPIIGS*
Ga0075433_118408652	3300006852	Populus Rhizosphere	DFLEVPAHMVAERAELPGIDPRLVKAVGVRDGQHFIVLDIDALVAPII*
Ga0075429_1007957013	3300006880	Populus Rhizosphere	GVGQVVDFLEVPERAIAERADLPGIDPRLVKAVGIRDGQHFILLDIETLVAPIIGG*
Ga0079218_122606433	3300007004	Agricultural Soil	LEVPAQSVAERADLPGVDPRLVRAVGLRDDQHFILLDIDRLFEPIVGG*
Ga0105099_106736463	3300009082	Freshwater Sediment	EVPAASVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIGG*
Ga0075418_121718932	3300009100	Populus Rhizosphere	GQVLDFLEVPEESVAERADLPGVDPRLVKAVGLRDDRPFILLDIDRLLETIVGG*
Ga0105104_101309661	3300009168	Freshwater Sediment	VGQVLDFLEVPEQSVAERADLPGVDPRPVKAVGLRDDRPFIVLDIDRLLETIVGG*
Ga0105078_10680121	3300009823	Groundwater Sand	LEVKGRGYGLGVGQVLDFLELPAGSVVERRDLPGVDPRLVKAVGHGGDQHFILLDVDALFAPIIGS*
Ga0126311_102353321	3300010045	Serpentine Soil	KGKAYGLGVGQVLDFLEVPAASVVERQELPGVDPRLVKAVGLESNRHFILLDVEAVFAPIIGG*
Ga0134125_108942952	3300010371	Terrestrial Soil	VVDFLEVPARDVAERTDLPGIDPRLVKAVGVRDGQHFIVLDIDALVAPIIGT*
Ga0134125_123664293	3300010371	Terrestrial Soil	EVPAGSVAAQADLPGIDPRLVKAVGVHDGRHFILVDIDALVAPIIGS*
Ga0134125_125040452	3300010371	Terrestrial Soil	LEVPAGSVVERRELPGVDPRLVKAVGLGAGGQHFILLDVDAVFAPIIGG*
Ga0138514_1000194431	3300011003	Soil	RYGISVGHVIDFLEVPEHAVAERSDLPGIDPRLVKAVVVRDGQHFILLDIDALVAPIIGS
Ga0136623_101157853	3300012045	Polar Desert Sand	YGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGMGADQHFILLDVDALFAPIIGG*
Ga0137376_109612571	3300012208	Vadose Zone Soil	AIVVLEARGRNYGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG*
Ga0137361_108933191	3300012362	Vadose Zone Soil	EQSVAPRSELPGVDPRLVRAVGLQDDRHFILLDVAALFAPIIGS*
Ga0136613_104596623	3300012681	Polar Desert Sand	VLEVKGRSYGLGVSQVLDFLEVPPGSVVARRDLPGLDPRLVQAVGLHGDQHFILLDVDALFAPILGA*
Ga0157283_103066512	3300012907	Soil	AASVVERRELPGVDPRLVKAVGLESNRHFILLDVDAVFAPIIGS*
Ga0157301_100542583	3300012911	Soil	GQVLDFLEVPEQSVAERADLPGVDPRLVKAVGLRDDRPFILLDIDRLLETIVGG*
Ga0137407_107334293	3300012930	Vadose Zone Soil	FLEVPEQSVAPRSELPGVDPRLVRAVGLQDDRHFILLDVAALFAPIIGS*
Ga0162651_1000898711	3300012938	Soil	YGLAVGQVLDFLEVPERSVAARAELPGVDPRLVTAVGVRDDQHFILLDIDALFAPIIGGSAGQ*
Ga0164305_119772231	3300012989	Soil	EIPAHMVAERAELPGIDPRLVKAVGVRDGQHFIVLDIDALVAPII*
Ga0075324_10116993	3300014263	Natural And Restored Wetlands	AQRAELPGVDPRVVRAVGLHDDRPFILLDIDRLLETIVGG*
Ga0132256_1019899562	3300015372	Arabidopsis Rhizosphere	VGQVVDFLELPAHMVAERAELPGIDPRLVKAVGVRDGQHFIVLDIDALVAPII*
Ga0184610_11381831	3300017997	Groundwater Sediment	NYGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGVGADQHFILLDVDALFAPIIGG
Ga0184608_100017251	3300018028	Groundwater Sediment	GRSYGLGVGQVLDFLEVPAGSVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPII
Ga0184617_11656301	3300018066	Groundwater Sediment	RHWGLGVGQVQDFLEVPAAAVVERRDLPGVDPRLVKAVGQGAGQHFILLDVDALFAPIIG
Ga0184631_101798223	3300018070	Groundwater Sediment	LGVGQVLDFLEVPAGSVVDRRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIGG
Ga0184627_103497921	3300018079	Groundwater Sediment	RSYGLGVGQVLDFLEVPAGSVVERRDLPGVDPRLVKAVGLGADQHFIMLDVDALFAPIIG
Ga0190272_103801283	3300018429	Soil	GYGLGVGQVLDFLEVPASSVVERRDLPGVDPRLVKAVGLGAGQHFILLDVDALFAPIIGG
Ga0190272_131802382	3300018429	Soil	VGGRRYGLGVGQVLDFLEVPEQSVAERADLPGVDPRLVLAVGLRGDQHFILLDIDRLFEPIIGA
Ga0190268_100926613	3300018466	Soil	LDFLEVPEQSVAERADLPGVDPRLVLAVGLRGDQHFILLDIDRLLETIVGG
Ga0190268_115360361	3300018466	Soil	FLELPAGSVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFSPIIGV
Ga0190270_109291161	3300018469	Soil	LEVPGHAVAQRSDLPGIDPRLVKAVGVRDGQHFILLDIDALVAPIIGS
Ga0190273_119172912	3300018920	Soil	VGQVLDFLEVPAGSVVERRDLPGVDPRLVKAVGHGADQHFILLDVDALFAPIIGA
Ga0193748_10118791	3300019865	Soil	QVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Ga0193717_11260703	3300020060	Soil	LPAASVVERRDLPGVDPRLVKAVGLRADQHFILLDVDALFAPIIGG
Ga0210381_100617411	3300021078	Groundwater Sediment	AIVVLEARGRNYGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGVGADQHFILLDVDALFAPIIGG
Ga0196959_102056641	3300021184	Soil	FLEIPDHSVAERADLPGVDPRLVKAVALRDDRPFILLDIDRLLETIVGG
Ga0193695_10142903	3300021418	Soil	GVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Ga0209519_106680221	3300025318	Soil	GLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIGG
Ga0209640_102956814	3300025324	Soil	LDFLEVPEQSVAQRADLPGVDPRLVRAVGLRDDRHFILLDIDRLFEPIIGA
Ga0209640_105409293	3300025324	Soil	VVLEVKGRGYGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIGG
Ga0210061_10407491	3300025537	Natural And Restored Wetlands	GVIDFLEVPAASVAQRADLPGIDPRLVKAVGVQDGRHFILLDIDALVAPIIGS
Ga0210061_10670281	3300025537	Natural And Restored Wetlands	RRYGLAVGQVLDFLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0207660_111332461	3300025917	Corn Rhizosphere	AASVVERRELPGVDPRLVKAVGLESNRHFILLDVDAVFAPIIGS
Ga0207687_107742943	3300025927	Miscanthus Rhizosphere	LEVPERSVAARAQLPGVDPRLVKAIGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0207661_110410311	3300025944	Corn Rhizosphere	VLDFLEVPAASVVERRELPGVDPRLVKAVGLESNRHFILLDVEAVFAPIIGS
Ga0210116_10188291	3300025959	Natural And Restored Wetlands	YGLAVGQVLDFLEVPQGSVASRTDLPGVDPRLVKAVGIHEGQHFVLLDIDALFEPMIGG
Ga0208420_10139143	3300026028	Natural And Restored Wetlands	VGQVLDFLEVPEQSVAERADLPGVDPRLVKAVGLRDDRPFILLDIDRLLETIVGG
Ga0208419_10373232	3300026032	Natural And Restored Wetlands	EVPEQSVAERADLPGVDPRLVKAVGLRDDRPFILLDIDRLLETIVGG
Ga0207676_107406931	3300026095	Switchgrass Rhizosphere	FLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0207674_102575841	3300026116	Corn Rhizosphere	GLAVGQVLDFLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0207518_1008191	3300026812	Soil	AYGLGVGQVLDFLEVPAASVVERRELPGVDPRLVKAVGLESNRHFILLDVDAVFAPIIGS
Ga0207467_10181622	3300027036	Soil	VLDFLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0209177_103672141	3300027775	Agricultural Soil	LDFLEVPAAAVVERRELPGVDPRLVKAVGMDADRHFILLDVEAAFAPIIGG
Ga0209287_102746321	3300027792	Freshwater Sediment	PAASVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIGG
Ga0209590_110412222	3300027882	Vadose Zone Soil	LDFLEVPERSIAPRADLPGVDPRLVRAVGLQDDRHFILLDVAALFAPIIGS
Ga0207428_102270391	3300027907	Populus Rhizosphere	GQVLDFLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0209820_12314202	3300027956	Freshwater Sediment	FLEVPEHSVAQRADLPGVDPRLVKAVGLRDDQPFIVLDIDRLLETIVGG
Ga0307313_100777393	3300028715	Soil	LEVPEQSIAPRSELPGVDPRLVRAVGLQDDRHFILLDVAALFAPIIGS
Ga0307311_101211313	3300028716	Soil	VQDFLEVPAAAVVERRDLPGVDPRLVKAVGQGAGQHFILLDVDALFAPIIGS
Ga0307320_100724331	3300028771	Soil	VVLEARGRNYGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Ga0307320_100891211	3300028771	Soil	PGHAVAQRSDLPGIDPRLVKAVGVRDGQHFILLDIDALVAPIIGS
Ga0307323_101325523	3300028787	Soil	DFLEVPEQSIAPRSELPGVDPRLVRAVGLQDDRHFILLDVAALFAPIIGS
Ga0307299_102137501	3300028793	Soil	VLEVKGRTYGLGVGQVLDFLEVPAGSVVERRELPGVDPRLVKAVGLSGDRHFILLDVDALFSPIIGA
Ga0307305_104309901	3300028807	Soil	RGRSYGLGVGQVLDFLEVPAGSVVERRELPGVDPRLVKAVGLGADQHFILLDVEAVFAPIIGSEPSPPR
Ga0307296_100912281	3300028819	Soil	VKGRTYGLGVGQVLDFLEVPAGSVVERRELPGVDPRLVKAVGLSGDRHFILLDVDALFSPIIGA
Ga0307296_107617962	3300028819	Soil	QVLDFLEVPAGSVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIG
Ga0307312_101900613	3300028828	Soil	SYGLGVGQVLDFLEVPAGSVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIG
Ga0307314_101400043	3300028872	Soil	YGLGVGQVLDFLEVPAGSVVERRELPGVDPRLVKAVGLSGDRHFILLDVDALFSPIIGA
Ga0307278_101751441	3300028878	Soil	IVVLEARGRNYGLGVGQVLDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Ga0307308_100840303	3300028884	Soil	DFLEVPAASVVERRDLPGVDPRLVKAVGVGANQHFILLDVDALFAPIIGA
Ga0302046_108824901	3300030620	Soil	YGLGVGQVLDFVEVPATAVVERQELPGVDPRLVKAVGLGAQQHFILLDVDALFAPIIGA
Ga0302046_110823892	3300030620	Soil	VGGRRYGLGVGQVLDFLEVPEQSVAERADLPGVDPRLVLAVGLRDDQHFILLDIDRLFEPIIGA
Ga0308197_104339561	3300031093	Soil	GQVLDFLEVPAGSVVERRDLPGVDPRLVKAVGLGADQHFILLDVDALFAPIIG
Ga0308199_10782491	3300031094	Soil	LEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Ga0308184_10281293	3300031095	Soil	LDFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG
Ga0308187_104452032	3300031114	Soil	RRYGIGVGQVVDFLEVPGHAVAQRSDLPGIDPRLVKAVGVRDGQHFILLDIDALVAPIIG
(restricted) Ga0255312_11044221	3300031248	Sandy Soil	YGIGVGQVVDFLEVPEHAVAERSDLPGIDPRLVKAVGVRDGQHFILLDIDALVAPIIGS
Ga0308179_10281121	3300031424	Soil	FLEVPGHAVAERSDLPGIDPRLVKAVGVRDGQHFILLDIDALVAPIIGS
Ga0307408_1001302281	3300031548	Rhizosphere	KGRSYGLGVSQVLDFLEVPAGSVVERRDLPGLDPRLVKAVGLHADQHFILLDVDALFAPIIGA
Ga0307413_116324372	3300031824	Rhizosphere	VDFLEVPAHAVAERAELPGIDPRLVKAVGIHDDQHFILLDIDALVAPIIGS
Ga0307410_106459691	3300031852	Rhizosphere	LEVPAGSVVERRDLPGLDPRLVKAVGLHADQHFILLDVDALFAPIIGA
Ga0307406_100376184	3300031901	Rhizosphere	SQVLDFLEVPAGSVVERRDLPGLDPRLVKAVGLHADQHFILLDVDALFAPIIGA
Ga0307407_100177365	3300031903	Rhizosphere	VVLDVKGRSYGLGVSQVLDFLEVPAGSVVERRDLPGLDPRLVKAVGLHADQHFILLDVDALFAPIIGA
Ga0307407_100760073	3300031903	Rhizosphere	LGVGQVLDFLELPAGSVVERRDLPGVDPRLVKAVGLESDRHFILLDIEAVFAPIIGG
Ga0307407_101423513	3300031903	Rhizosphere	GLGVSQVLDFLEVPAGSVVERRDLPGLDPRLVKAVGLHADQHFILLDVDALFAPIIGA
Ga0310885_106632982	3300031943	Soil	FLEVPEQSVAERADLPGVDPRLVKAVGLRDDRPFIVLDIDRLLETIVGG
Ga0307409_1011761143	3300031995	Rhizosphere	VLDFLEVPAGSVVERRDLPGVDPRLVKAVGLNADQHFILLDVDALFAPIIGA
Ga0307416_1000057987	3300032002	Rhizosphere	KGRSYGLGVSQVLDFLEVPAGSVVERRDLPGLDPRLVKAVGLHADQHFILLVVDALFAPIIGA
Ga0310810_101434061	3300033412	Soil	YGLAVGQVLDFLEVPERSVAARAQLPGVDPRLVKAVGVRDDQHFILLDIDALFAPIIGGSAGQ
Ga0247830_104167401	3300033551	Soil	GKAYGLGVGQVLDFLEVPAASVVERRELPGVDPRLVKAVGLESNRHFILLDVEAVFAPIIGS
Ga0370546_065035_434_586	3300034681	Soil	DFLEVPAASVVERRDLPGVDPRLVKAVGVSADQHFILLDVDALFAPIIGG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters