NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F085156

Metagenome / Metatranscriptome Family F085156

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085156
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 48 residues
Representative Sequence MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Number of Associated Samples 101
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 53.15 %
% of genes near scaffold ends (potentially truncated) 71.17 %
% of genes from short scaffolds (< 2000 bps) 90.09 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.153 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater
(27.928 % of family members)
Environment Ontology (ENVO) Unclassified
(45.045 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(75.676 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1JGI12547J11936_10033492
2OpTDRAFT_101412402
3B570J13894_10238881
4B570J29582_10239292
5JGI25908J49247_100341713
6JGI25917J50250_10016666
7JGI25912J50252_101104962
8JGI25913J50563_10006567
9JGI25923J51411_10412581
10Ga0007749_12009831
11Ga0007746_10621952
12Ga0007763_100602832
13Ga0007763_100888082
14Ga0070374_103827691
15Ga0070374_105169532
16Ga0102873_11924583
17Ga0102828_10502941
18Ga0102863_11131771
19Ga0102856_10134902
20Ga0102852_10774182
21Ga0102907_10399483
22Ga0102893_12132642
23Ga0108970_107863962
24Ga0114354_12666481
25Ga0114336_12014292
26Ga0102831_12595652
27Ga0114976_103685833
28Ga0114971_103341302
29Ga0114972_100708382
30Ga0137675_10204081
31Ga0157138_10563082
32Ga0157531_11646951
33Ga0138276_10362012
34Ga0138291_11303572
35Ga0138287_12301531
36Ga0138290_10676092
37Ga0164294_111593921
38Ga0157558_1233081
39Ga0157551_11449932
40Ga0157536_10343751
41Ga0177922_102087242
42Ga0177922_111969702
43Ga0187842_11555491
44Ga0187842_12205972
45Ga0187844_103062612
46Ga0187843_102479272
47Ga0211732_15417861
48Ga0208590_10048132
49Ga0208226_10340952
50Ga0208601_10465061
51Ga0208857_10508492
52Ga0208718_10190892
53Ga0214162_10143402
54Ga0214162_10609522
55Ga0210306_12195492
56Ga0210309_10843671
57Ga0210301_13170741
58Ga0210307_12686592
59Ga0210297_10300822
60Ga0228702_10920961
61Ga0244777_101702321
62Ga0244777_105264951
63Ga0244777_108291082
64Ga0244776_100314351
65Ga0255173_10809722
66Ga0256318_10734711
67Ga0255222_10162693
68Ga0255225_10548312
69Ga0255232_10263132
70Ga0256306_10671471
71Ga0256306_10989982
72Ga0256302_11033121
73Ga0255268_10754741
74Ga0255230_10195711
75Ga0256304_11074791
76Ga0255248_10245182
77Ga0255245_10090852
78Ga0255241_10185282
79Ga0256313_10410092
80Ga0255074_10371613
81Ga0255067_10058872
82Ga0255082_10057422
83Ga0255105_10016831
84Ga0255114_10198822
85Ga0255111_10078341
86Ga0255081_10307892
87Ga0208023_10582802
88Ga0208802_10188592
89Ga0208807_10529902
90Ga0208022_11138171
91Ga0255085_10710501
92Ga0255075_10527751
93Ga0255123_10177364
94Ga0255117_10027905
95Ga0208975_11948931
96Ga0247833_12353561
97Ga0209597_13626553
98Ga0209596_10590122
99Ga0209444_102054841
100Ga0209768_102937961
101Ga0209400_10376912
102Ga0247834_10945412
103Ga0255261_10112861
104Ga0255226_10100681
105Ga0255226_10323161
106Ga0256301_10185731
107Ga0256301_10350282
108Ga0315908_107848991
109Ga0335031_0509914_38_223
110Ga0335036_0646322_1_150
111Ga0335058_0634733_450_593
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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5101520253035404550MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNVSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
46.8%53.2%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Freshwater And Sediment
Freshwater Lake
Freshwater Lentic
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Freshwater
Freshwater
Freshwater
Pond Fresh Water
Freshwater
Estuarine
Freshwater And Marine
Estuary
8.1%11.7%9.0%9.0%6.3%27.9%18.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12547J11936_100334923300000736Freshwater And SedimentMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
OpTDRAFT_1014124023300000928Freshwater And MarineMMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
B570J13894_102388813300001275FreshwaterGAGVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
B570J29582_102392923300002351FreshwaterGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25908J49247_1003417133300003277Freshwater LakeMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25917J50250_100166663300003395Freshwater LakeMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25912J50252_1011049623300003412Freshwater LakeMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDN
JGI25913J50563_100065673300003431Freshwater LakeMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25923J51411_104125813300003493Freshwater LakeMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0007749_120098313300004762Freshwater LakeEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0007746_106219523300004763Freshwater LakeMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV*
Ga0007763_1006028323300004796Freshwater LakeMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDN
Ga0007763_1008880823300004796Freshwater LakeMIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0070374_1038276913300005517Freshwater LakeMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0070374_1051695323300005517Freshwater LakeMIGLAGEEALKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0102873_119245833300007545EstuarineVGADGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0102828_105029413300007559EstuarineRGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV*
Ga0102863_111317713300007622EstuarineMMGLAGEEELKEDRSARRSAGRPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0102856_101349023300007636EstuarineMMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISNV*
Ga0102852_107741823300007718EstuarineMMGLAGEDELKEDRSARRSADGPLGGKLGIAGCDAGVDESFQDNIEISNV*
Ga0102907_103994833300007962EstuarineMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDE
Ga0102893_121326423300008052EstuarineFAVKEDRSARRSTDGPLGGKLGIAGCNAGADESFQDNIEISNE*
Ga0108970_1078639623300008055EstuaryMMGLAGEAELKEDRSARRSAGGPLGGKLGITGCNAGVDESFQDNIEISNV*
Ga0114354_126664813300008119Freshwater, PlanktonMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDVSFQDNIEISNE*
Ga0114336_120142923300008261Freshwater, PlanktonMMGLAGEAELKEDRSARRSADGPLGGKLGIAGCSAGVDESFQDNIEISNV*
Ga0102831_125956523300008996EstuarineLKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0114976_1036858333300009184Freshwater LakeMKGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0114971_1033413023300009185Freshwater LakeMDALMMGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNE*
Ga0114972_1007083823300009187Freshwater LakeMMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEITNV*
Ga0137675_102040813300010966Pond Fresh WaterAEAPAENEDRSAKRSADGPLGGKLGIAGCNAGLEESSQDNIEISNE*
Ga0157138_105630823300012352FreshwaterPAENEDRSAKRSADGPLGGKLGIAGCNAGLEESSQDNIEISNE*
Ga0157531_116469513300012727FreshwaterAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0138276_103620123300012768Freshwater LakeMMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0138291_113035723300012770Freshwater LakeMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNADVDESFQDNIEISNV*
Ga0138287_123015313300012772Freshwater LakeMMGLEVLMLAAALKEDRSAKRSADGPLGGKLGIAG
Ga0138290_106760923300012773Freshwater LakeMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0164294_1115939213300013006FreshwaterMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0157558_12330813300013063FreshwaterVGVLNEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0157551_114499323300013076FreshwaterMMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0157536_103437513300013079FreshwaterGAGVAALMMGLTVEAELKEDRSARRSAGGPLGGKLGITGCNAGVDESFQDNIEISNV*
Ga0177922_1020872423300013372FreshwaterMIGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV*
Ga0177922_1119697023300013372FreshwaterMIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE
Ga0187842_115554913300018790FreshwaterMMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0187842_122059723300018790FreshwaterMMGLAVEAELKEDRSARRSADGPLGGQLGIAGCNAGVDESFQDNIEIS
Ga0187844_1030626123300018868FreshwaterMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDVSFQDNIEISNE
Ga0187843_1024792723300019093FreshwaterMIGLAGEEELKEYRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0211732_154178613300020141FreshwaterAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208590_100481323300020501FreshwaterMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208226_103409523300020523FreshwaterELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208601_104650613300020532FreshwaterVGADGAGVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0208857_105084923300020542FreshwaterGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208718_101908923300020565FreshwaterMMGLEGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0214162_101434023300021108FreshwaterMMGLAVEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0214162_106095223300021108FreshwaterMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDE
Ga0210306_121954923300021312EstuarineMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV
Ga0210309_108436713300021317EstuarineELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0210301_131707413300021325EstuarineMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDES
Ga0210307_126865923300021336EstuarineMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESF
Ga0210297_103008223300021845EstuarineLTVEAPALNEDRSTKRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0228702_109209613300022748FreshwaterAVACMGLACATEAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV
Ga0244777_1017023213300024343EstuarinePALNEDRSTKRSADGPLGGKLGIAGCNAGLDESSQDNIEISNE
Ga0244777_1052649513300024343EstuarineGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV
Ga0244777_1082910823300024343EstuarineMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQYNIEISN
Ga0244776_1003143513300024348EstuarineAGVAAGMMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISNV
Ga0255173_108097223300024358FreshwaterATEAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV
Ga0256318_107347113300024485FreshwaterMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNVLIMKA
Ga0255222_101626933300024487FreshwaterDGAGVAALMMGLTVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV
Ga0255225_105483123300024537FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQD
Ga0255232_102631323300024558FreshwaterMMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDN
Ga0256306_106714713300024560FreshwaterVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV
Ga0256306_109899823300024560FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQ
Ga0256302_110331213300024571FreshwaterMIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQ
Ga0255268_107547413300024572FreshwaterAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV
Ga0255230_101957113300024849FreshwaterMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0256304_110747913300024856FreshwaterGVAALMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255248_102451823300025742FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0255245_100908523300025744FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE
Ga0255241_101852823300025746FreshwaterDGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0256313_104100923300025757FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDE
Ga0255074_103716133300027121FreshwaterGAGVAALMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255067_100588723300027129FreshwaterLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255082_100574223300027139FreshwaterMMGLTVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV
Ga0255105_100168313300027143FreshwaterVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255114_101988223300027145FreshwaterGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255111_100783413300027154FreshwaterAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV
Ga0255081_103078923300027155FreshwaterGADGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208023_105828023300027206EstuarineMMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISDM
Ga0208802_101885923300027210EstuarineMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE
Ga0208807_105299023300027239EstuarineLMKGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208022_111381713300027418EstuarineKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255085_107105013300027538FreshwaterMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255075_105277513300027578FreshwaterMIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255123_101773643300027589FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNVLI
Ga0255117_100279053300027600FreshwaterAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208975_119489313300027659Freshwater LenticMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIE
(restricted) Ga0247833_123535613300027730FreshwaterAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0209597_136265533300027746Freshwater LakeGMAALMMGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV
Ga0209596_105901223300027754Freshwater LakeLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0209444_1020548413300027756Freshwater LakeMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0209768_1029379613300027772Freshwater LakeMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEI
Ga0209400_103769123300027963Freshwater LakeMMGLTVEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
(restricted) Ga0247834_109454123300027977FreshwaterLGGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255261_101128613300028097FreshwaterGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV
Ga0255226_101006813300028255FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVD
Ga0255226_103231613300028255FreshwaterMMGLAGEAELKEDRSARRSAGGPLGGKLGITGCNAGVDE
Ga0256301_101857313300029697FreshwaterMIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0256301_103502823300029697FreshwaterMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0315908_1078489913300031786FreshwaterLKEDRSARRSAGGPLGGKLGIAGCNACVDVSFQDNIEISNE
Ga0335031_0509914_38_2233300034104FreshwaterVGADGAGVAALMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0335036_0646322_1_1503300034106FreshwaterTVNEDRSAKRSADGPLGGKLGIAGCNAGLDDSSQDNIEISNEWIMKACD
Ga0335058_0634733_450_5933300034121FreshwaterLVDVFAVKEDRSARRSADGPLGGKLGIAGCNAGADESFQDNIEISNE


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