Basic Information | |
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Family ID | F085156 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 48 residues |
Representative Sequence | MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 53.15 % |
% of genes near scaffold ends (potentially truncated) | 71.17 % |
% of genes from short scaffolds (< 2000 bps) | 90.09 % |
Associated GOLD sequencing projects | 99 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (53.153 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater (27.928 % of family members) |
Environment Ontology (ENVO) | Unclassified (45.045 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (75.676 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Freshwater And Sediment Freshwater Lake Freshwater Lentic Freshwater Freshwater, Plankton Freshwater Lake Freshwater Freshwater Freshwater Freshwater Pond Fresh Water Freshwater Estuarine Freshwater And Marine Estuary |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12547J11936_10033492 | 3300000736 | Freshwater And Sediment | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
OpTDRAFT_101412402 | 3300000928 | Freshwater And Marine | MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
B570J13894_10238881 | 3300001275 | Freshwater | GAGVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
B570J29582_10239292 | 3300002351 | Freshwater | GEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
JGI25908J49247_100341713 | 3300003277 | Freshwater Lake | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
JGI25917J50250_10016666 | 3300003395 | Freshwater Lake | MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
JGI25912J50252_101104962 | 3300003412 | Freshwater Lake | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDN |
JGI25913J50563_10006567 | 3300003431 | Freshwater Lake | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
JGI25923J51411_10412581 | 3300003493 | Freshwater Lake | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISN |
Ga0007749_12009831 | 3300004762 | Freshwater Lake | EAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0007746_10621952 | 3300004763 | Freshwater Lake | MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV* |
Ga0007763_100602832 | 3300004796 | Freshwater Lake | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDN |
Ga0007763_100888082 | 3300004796 | Freshwater Lake | MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0070374_103827691 | 3300005517 | Freshwater Lake | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEIS |
Ga0070374_105169532 | 3300005517 | Freshwater Lake | MIGLAGEEALKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS |
Ga0102873_11924583 | 3300007545 | Estuarine | VGADGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0102828_10502941 | 3300007559 | Estuarine | RGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV* |
Ga0102863_11131771 | 3300007622 | Estuarine | MMGLAGEEELKEDRSARRSAGRPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0102856_10134902 | 3300007636 | Estuarine | MMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISNV* |
Ga0102852_10774182 | 3300007718 | Estuarine | MMGLAGEDELKEDRSARRSADGPLGGKLGIAGCDAGVDESFQDNIEISNV* |
Ga0102907_10399483 | 3300007962 | Estuarine | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDE |
Ga0102893_12132642 | 3300008052 | Estuarine | FAVKEDRSARRSTDGPLGGKLGIAGCNAGADESFQDNIEISNE* |
Ga0108970_107863962 | 3300008055 | Estuary | MMGLAGEAELKEDRSARRSAGGPLGGKLGITGCNAGVDESFQDNIEISNV* |
Ga0114354_12666481 | 3300008119 | Freshwater, Plankton | MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDVSFQDNIEISNE* |
Ga0114336_12014292 | 3300008261 | Freshwater, Plankton | MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCSAGVDESFQDNIEISNV* |
Ga0102831_12595652 | 3300008996 | Estuarine | LKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0114976_103685833 | 3300009184 | Freshwater Lake | MKGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0114971_103341302 | 3300009185 | Freshwater Lake | MDALMMGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNE* |
Ga0114972_100708382 | 3300009187 | Freshwater Lake | MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEITNV* |
Ga0137675_10204081 | 3300010966 | Pond Fresh Water | AEAPAENEDRSAKRSADGPLGGKLGIAGCNAGLEESSQDNIEISNE* |
Ga0157138_10563082 | 3300012352 | Freshwater | PAENEDRSAKRSADGPLGGKLGIAGCNAGLEESSQDNIEISNE* |
Ga0157531_11646951 | 3300012727 | Freshwater | AVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0138276_10362012 | 3300012768 | Freshwater Lake | MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI |
Ga0138291_11303572 | 3300012770 | Freshwater Lake | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNADVDESFQDNIEISNV* |
Ga0138287_12301531 | 3300012772 | Freshwater Lake | MMGLEVLMLAAALKEDRSAKRSADGPLGGKLGIAG |
Ga0138290_10676092 | 3300012773 | Freshwater Lake | MGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0164294_111593921 | 3300013006 | Freshwater | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI |
Ga0157558_1233081 | 3300013063 | Freshwater | VGVLNEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0157551_11449932 | 3300013076 | Freshwater | MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV* |
Ga0157536_10343751 | 3300013079 | Freshwater | GAGVAALMMGLTVEAELKEDRSARRSAGGPLGGKLGITGCNAGVDESFQDNIEISNV* |
Ga0177922_102087242 | 3300013372 | Freshwater | MIGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV* |
Ga0177922_111969702 | 3300013372 | Freshwater | MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE |
Ga0187842_11555491 | 3300018790 | Freshwater | MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0187842_12205972 | 3300018790 | Freshwater | MMGLAVEAELKEDRSARRSADGPLGGQLGIAGCNAGVDESFQDNIEIS |
Ga0187844_103062612 | 3300018868 | Freshwater | MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDVSFQDNIEISNE |
Ga0187843_102479272 | 3300019093 | Freshwater | MIGLAGEEELKEYRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0211732_15417861 | 3300020141 | Freshwater | AAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208590_10048132 | 3300020501 | Freshwater | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208226_10340952 | 3300020523 | Freshwater | ELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208601_10465061 | 3300020532 | Freshwater | VGADGAGVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISN |
Ga0208857_10508492 | 3300020542 | Freshwater | GLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208718_10190892 | 3300020565 | Freshwater | MMGLEGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0214162_10143402 | 3300021108 | Freshwater | MMGLAVEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0214162_10609522 | 3300021108 | Freshwater | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDE |
Ga0210306_12195492 | 3300021312 | Estuarine | MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV |
Ga0210309_10843671 | 3300021317 | Estuarine | ELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0210301_13170741 | 3300021325 | Estuarine | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDES |
Ga0210307_12686592 | 3300021336 | Estuarine | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESF |
Ga0210297_10300822 | 3300021845 | Estuarine | LTVEAPALNEDRSTKRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0228702_10920961 | 3300022748 | Freshwater | AVACMGLACATEAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV |
Ga0244777_101702321 | 3300024343 | Estuarine | PALNEDRSTKRSADGPLGGKLGIAGCNAGLDESSQDNIEISNE |
Ga0244777_105264951 | 3300024343 | Estuarine | GLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV |
Ga0244777_108291082 | 3300024343 | Estuarine | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQYNIEISN |
Ga0244776_100314351 | 3300024348 | Estuarine | AGVAAGMMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISNV |
Ga0255173_10809722 | 3300024358 | Freshwater | ATEAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV |
Ga0256318_10734711 | 3300024485 | Freshwater | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNVLIMKA |
Ga0255222_10162693 | 3300024487 | Freshwater | DGAGVAALMMGLTVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV |
Ga0255225_10548312 | 3300024537 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQD |
Ga0255232_10263132 | 3300024558 | Freshwater | MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDN |
Ga0256306_10671471 | 3300024560 | Freshwater | VEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV |
Ga0256306_10989982 | 3300024560 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQ |
Ga0256302_11033121 | 3300024571 | Freshwater | MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQ |
Ga0255268_10754741 | 3300024572 | Freshwater | AEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV |
Ga0255230_10195711 | 3300024849 | Freshwater | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS |
Ga0256304_11074791 | 3300024856 | Freshwater | GVAALMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255248_10245182 | 3300025742 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS |
Ga0255245_10090852 | 3300025744 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE |
Ga0255241_10185282 | 3300025746 | Freshwater | DGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0256313_10410092 | 3300025757 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDE |
Ga0255074_10371613 | 3300027121 | Freshwater | GAGVAALMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255067_10058872 | 3300027129 | Freshwater | LAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255082_10057422 | 3300027139 | Freshwater | MMGLTVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV |
Ga0255105_10016831 | 3300027143 | Freshwater | VAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255114_10198822 | 3300027145 | Freshwater | GEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255111_10078341 | 3300027154 | Freshwater | AGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV |
Ga0255081_10307892 | 3300027155 | Freshwater | GADGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208023_10582802 | 3300027206 | Estuarine | MMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISDM |
Ga0208802_10188592 | 3300027210 | Estuarine | MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE |
Ga0208807_10529902 | 3300027239 | Estuarine | LMKGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208022_11138171 | 3300027418 | Estuarine | KEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255085_10710501 | 3300027538 | Freshwater | MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255075_10527751 | 3300027578 | Freshwater | MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255123_10177364 | 3300027589 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNVLI |
Ga0255117_10027905 | 3300027600 | Freshwater | AAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0208975_11948931 | 3300027659 | Freshwater Lentic | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIE |
(restricted) Ga0247833_12353561 | 3300027730 | Freshwater | AVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0209597_13626553 | 3300027746 | Freshwater Lake | GMAALMMGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV |
Ga0209596_10590122 | 3300027754 | Freshwater Lake | LTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0209444_102054841 | 3300027756 | Freshwater Lake | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISN |
Ga0209768_102937961 | 3300027772 | Freshwater Lake | MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEI |
Ga0209400_10376912 | 3300027963 | Freshwater Lake | MMGLTVEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV |
(restricted) Ga0247834_10945412 | 3300027977 | Freshwater | LGGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV |
Ga0255261_10112861 | 3300028097 | Freshwater | GLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV |
Ga0255226_10100681 | 3300028255 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVD |
Ga0255226_10323161 | 3300028255 | Freshwater | MMGLAGEAELKEDRSARRSAGGPLGGKLGITGCNAGVDE |
Ga0256301_10185731 | 3300029697 | Freshwater | MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI |
Ga0256301_10350282 | 3300029697 | Freshwater | MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI |
Ga0315908_107848991 | 3300031786 | Freshwater | LKEDRSARRSAGGPLGGKLGIAGCNACVDVSFQDNIEISNE |
Ga0335031_0509914_38_223 | 3300034104 | Freshwater | VGADGAGVAALMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISN |
Ga0335036_0646322_1_150 | 3300034106 | Freshwater | TVNEDRSAKRSADGPLGGKLGIAGCNAGLDDSSQDNIEISNEWIMKACD |
Ga0335058_0634733_450_593 | 3300034121 | Freshwater | LVDVFAVKEDRSARRSADGPLGGKLGIAGCNAGADESFQDNIEISNE |
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