Metagenome Family F085151

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085151
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	79 residues
Representative Sequence	MLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE
Number of Associated Samples	31
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	27
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (55.856 % of family members)
Environment Ontology (ENVO)	Unclassified (55.856 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (90.090 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140. 1Ga0071351_10589691 2Ga0071350_12797652 3Ga0068877_101529582 4Ga0068877_102113722 5Ga0068877_102487422 6Ga0068877_102498843 7Ga0068877_102577193 8Ga0068877_104315002 9Ga0068877_104689481 10Ga0068877_105054791 11Ga0068877_105541982 12Ga0068877_105639981 13Ga0068877_105772342 14Ga0068877_105862513 15Ga0068877_106096872 16Ga0068877_106879091 17Ga0068876_101353812 18Ga0068876_101672321 19Ga0068876_103087962 20Ga0068876_104693712 21Ga0068876_104826181 22Ga0068872_104001091 23Ga0068875_10149091 24Ga0102914_10611733 25Ga0102899_10650992 26Ga0114338_10115484 27Ga0114338_10151421 28Ga0114338_10284344 29Ga0114338_10344206 30Ga0114338_10436643 31Ga0114338_10444683 32Ga0114338_10802231 33Ga0114338_10992781 34Ga0114338_11213841 35Ga0114338_11240671 36Ga0114338_11265222 37Ga0114338_11319881 38Ga0114338_11602501 39Ga0114338_12336281 40Ga0114338_12390241 41Ga0114338_12465681 42Ga0114338_12872321 43Ga0114339_10096009 44Ga0114339_10147646 45Ga0114339_10181063 46Ga0114339_10520592 47Ga0114339_10823801 48Ga0114339_10963851 49Ga0114339_11165432 50Ga0114339_11378371 51Ga0114339_11490412 52Ga0114339_11524661 53Ga0114339_11582851 54Ga0114339_11904701 55Ga0114339_11929301 56Ga0114339_11953452 57Ga0114339_12149461 58Ga0114339_12569511 59Ga0114339_12616991 60Ga0114342_10742112 61Ga0114342_11797291 62Ga0114342_11833191 63Ga0114345_11888651 64Ga0114348_10885982 65Ga0114348_10928601 66Ga0114348_11210241 67Ga0114356_10676012 68Ga0114356_13028462 69Ga0114356_13061401 70Ga0114356_13774151 71Ga0114356_14962832 72Ga0114359_11293602 73Ga0114359_11357801 74Ga0114359_11625902 75Ga0114359_12473821 76Ga0114359_12563941 77Ga0114359_12690111 78Ga0114359_12725231 79Ga0114359_13167031 80Ga0114337_12107931 81Ga0114349_10172487 82Ga0114349_10583762 83Ga0114349_10707101 84Ga0114349_11669551 85Ga0114349_12155601 86Ga0114349_12604941 87Ga0114361_11680242 88Ga0110928_10697081 89Ga0102814_106798061 90Ga0102815_109207131 91Ga0102890_10109951 92Ga0211734_112973841 93Ga0211733_106141311 94Ga0211726_105169831 95Ga0208305_102084891 96Ga0208671_101863341 97Ga0208671_102314551 98Ga0209985_100829472 99Ga0209985_100966751 100Ga0209985_101749802 101Ga0209985_102066251 102Ga0209985_102165661 103Ga0209985_103118791 104Ga0209985_103566441 105Ga0209990_100766112 106Ga0209990_100955911 107Ga0209990_102070581 108Ga0209990_103640611 109Ga0209668_104545131 110Ga0209668_107147271 111Ga0334977_0581208_13_189
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140. 1Ga0071351_10589691 2Ga0071350_12797652 3Ga0068877_101529582 4Ga0068877_102577193 5Ga0068877_105639981 6Ga0068877_106096872 7Ga0068876_104693712 8Ga0102899_10650992 9Ga0114338_12336281 10Ga0114356_13028462 11Ga0114356_14962832 12Ga0110928_10697081
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 1Ga0114337_12107931 2Ga0071351_10589691 3Ga0068877_101529582 4Ga0068877_102113722 5Ga0068877_102487422 6Ga0068877_104689481 7Ga0068877_105862513 8Ga0068877_106096872 9Ga0068876_103087962 10Ga0068876_104693712 11Ga0114338_12872321 12Ga0114339_11929301 13Ga0114348_10885982 14Ga0114356_13028462 15Ga0208671_101863341 16Ga0209985_100966751 17Ga0209668_104545131 18Ga0209668_107147271
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.08% β-sheet: 0.00% Coil/Unstructured: 47.92%
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF07727	RVT_2	6.31
PF03639	Glyco_hydro_81	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG5498	Endoglucanase Acf2	Carbohydrate transport and metabolism [G]	0.90

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	92.79%
Marine	Environmental → Aquatic → Marine	7.21%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.21%
Lake	Environmental → Aquatic → Freshwater → Lake	59.46%
Lentic	Environmental → Aquatic → Freshwater → Lentic	32.43%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.21%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	59.46%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	30.63%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.21%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	28.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.80%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	55.86%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton	0.90%
Water Bodies	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies	0.90%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005044	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048	Environmental	Open in IMG/M
3300005069	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300006018	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaG	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007706	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3	Environmental	Open in IMG/M
3300008105	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR	Environmental	Open in IMG/M
3300008106	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR	Environmental	Open in IMG/M

Showing 1 to 10 of 31 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0071351_10589691	3300005044	Freshwater, Plankton	TKTLSSKITRSKHFLMLIEFIREQVMEGLIKLRKIPTESNVADLLTKLIVSRAFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0071350_12797652	3300005069	Freshwater	MLIEFIREQVMEGLIELRKIPTESNVVDLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0068877_101529582	3300005525	Freshwater Lake	MSIDLLAIVFEDNQPVIDLTKILSGKVTQSKHFLILIEFIREQVLEGLIELRKISTESNVADVLTKLIIGKAFTFAMHLLGKMGTKIDVNMNCEQLSYEQE*
Ga0068877_102113722	3300005525	Freshwater Lake	MLIEFIREQVMEGLINLRKIPTESNIADLLTKLIVSKTFTIKAMHLLGEMGMSLNVNKSCDELNFKKE*
Ga0068877_102487422	3300005525	Freshwater Lake	MLIEFIREQVMEGLIELRKIPTESNVAYLLTKLIVGKTFTIKAMHLLGEMGMSPDANESCNELNFEKE*
Ga0068877_102498843	3300005525	Freshwater Lake	MLIEFIREQVMEGLIELQKIPTETNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESC
Ga0068877_102577193	3300005525	Freshwater Lake	MHAEIRALYTLVLDIVFVVHLCEEVERPIDLPAIVFEDNQPVIDLTKTLSSKVTQSKHFLMLIEFIREQVEGLIELRKIPTKSNVADVLTKLTLGKAFTIKAMHLLGEMGITIDVNESCEELYYEQE*
Ga0068877_104315002	3300005525	Freshwater Lake	DNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVSDLLTKLIVGKTFTTKAIHLLGEMGMSLNVNKSYNELNFEQE*
Ga0068877_104689481	3300005525	Freshwater Lake	MLIEFIRKQVMERLIELRKVPTESNVADLLTKLIVGKTFTIKAMHLLGEMVMSLDVNESCDELNFEKE*
Ga0068877_105054791	3300005525	Freshwater Lake	MLIEFIREQVIEGLIELRKIPTESNVADLLTKLIVGKTFAIKAMHLLGEMGMSPDVNESCNELNFEKE*
Ga0068877_105541982	3300005525	Freshwater Lake	MLIEFIREQVMKGLIVLQKIPTESNVADLLTKLIVSKTFTIKAMHLLGEMGMSPNVNESYDELNFEQE*
Ga0068877_105639981	3300005525	Freshwater Lake	LTLDIIYIVHLCKEVGRPIDLPAVVFEDNQPVIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLNELRKIPTESNLADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYNELNLQQE*
Ga0068877_105772342	3300005525	Freshwater Lake	MEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQEKQYH*
Ga0068877_105862513	3300005525	Freshwater Lake	MFIEYIKEQVMEELIEVRKIPTESNIADMLTKLIVGKAFAIKAMHLLGEMGMSVDVNESCDELYYEKE*
Ga0068877_106096872	3300005525	Freshwater Lake	MHLCKEVGRPIDLPAIVFEDNQPVIDLTKMLSSKVTRSKHFLMLIEFIREQVMQGLIELQNIPTESDCRQKITIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0068877_106879091	3300005525	Freshwater Lake	MLIEFIREQVMEGLIKLRKIITESNVPDLLTKLIVGKTFTIKAMHLLGEMGMSLNLNESYDKLNFEQE*
Ga0068876_101353812	3300005527	Freshwater Lake	MLIEFIREQVMEGLIELKIPTESNIADLLAKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE
Ga0068876_101672321	3300005527	Freshwater Lake	MLIEFIREQVMEGLIELRKIPTESNVADMLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEKE*
Ga0068876_103087962	3300005527	Freshwater Lake	MLIEFIREQVMEGLIELQKIPTESNVADLLTKLIVSKTFTIKAMHLLGEMGMTPDVNGGCDELNFEKE*
Ga0068876_104693712	3300005527	Freshwater Lake	MEGLIELRKIPTESNVADMLTKLIVGKAFTIKAMHLLGEMGVSVDENESCDDLYYEKEKQYHQP*
Ga0068876_104826181	3300005527	Freshwater Lake	LIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNKSYDELNFEQE*
Ga0068872_104001091	3300005528	Freshwater Lake	LSSKITRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0068875_10149091	3300006018	Freshwater Lake	YIVHLCKEAGHPIDLLAIVFEYNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQVLEGLIELQKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNMNESPDELNF*
Ga0102914_10611733	3300007561	Estuarine	MLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0102899_10650992	3300007706	Estuarine	EGLIELRKIPTESNVADLLTKLIVGKAFTTKAMHLLGEMGMLLNMNESSDELNFQQE*
Ga0114338_10115484	3300008105	Freshwater, Plankton	MLTLDIIYIVHLCKEVGRPIDLPAIVFEDNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQVMEGLIELRKILTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSPDVNESCNELNFEKE*
Ga0114338_10151421	3300008105	Freshwater, Plankton	EVERPIDLPAIVFEDNQPVIDLTKTLSSKVTQSKHFLMLIEFIREQVEGLIELRKIPTKSNVADVLTKLTLGKAFTIKAMHLLGEMGITIDVNESCEELYYEQE*
Ga0114338_10284344	3300008105	Freshwater, Plankton	MLIEIIREQLMEGLIELRKIPTESNVADLLTKLIVGKTFNIKAMHLLGEMGMSLNVNESCDELNFENE*
Ga0114338_10344206	3300008105	Freshwater, Plankton	MLIEFIREQVMEGLIELQKIPTESNVADMLTKLIVGKTFTIKAMHLLGEMRMSVNVNESYDELNFEQV*
Ga0114338_10436643	3300008105	Freshwater, Plankton	MLIEFIRQQVMEGLIELQKIPTESNVADLLAKLIVGKTFTIKAMHLLGEMGMSPDVNESCNELNFEKE*
Ga0114338_10444683	3300008105	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTKSNIADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNE*
Ga0114338_10802231	3300008105	Freshwater, Plankton	EVGRPIDLPAIVFEDNQPVIDLTKTLSSKVTRSKHFLTLIEFIREQVMEGLIELRKIPTKSNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESHDELNFEQE*
Ga0114338_10992781	3300008105	Freshwater, Plankton	QPVIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLIELWKIPTESNVADLLTKLIVSRAFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0114338_11213841	3300008105	Freshwater, Plankton	DNQPVIDLTKTLSSKVTRSKHFLMLIEFVREQVTEGLIELRKIPPKSNVADLLTKLIVGKTFTIKAMNLLGEMGMSLNVNESYDELNFEQE*
Ga0114338_11240671	3300008105	Freshwater, Plankton	MHLCEEVGRPIDLPAIVFEDNQPVIDLTKMLSSKVTRSKHFLMLIEFIREQVMQGLIELQNIPTESDCRQKITIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114338_11265222	3300008105	Freshwater, Plankton	GLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114338_11319881	3300008105	Freshwater, Plankton	ITRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGRAFTTKAMHLLGEMGMSLNMNESSGELNFQQE*
Ga0114338_11602501	3300008105	Freshwater, Plankton	FLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKIFTTKAMHLLGEMGMSLNVKESYDELNFEQE*
Ga0114338_12336281	3300008105	Freshwater, Plankton	DLPAIVFEDNQPVIDLTKMLSSKVTRSKHFLMLIEFIGEQVMEGLIELRKIPTESNVADLLTKLIVGKAFTIKAMHLLGEMGMSHNVNESYDELNFGQE*
Ga0114338_12390241	3300008105	Freshwater, Plankton	DLTKMLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTETNVADLLTKLIVGKTFTIKAMHLLGEMGMTLNANESYDELNFEQE*
Ga0114338_12465681	3300008105	Freshwater, Plankton	MLIEFIREQVMEGLIELQKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMLPDVNKSCNELNFEKE*
Ga0114338_12872321	3300008105	Freshwater, Plankton	RPIDLPAVVFEDNQPVIDLTKTLSSKITQSKHFLMLIEFIREQVMEGLIELPKIPTESNVADLLTKLIVRKAFTTKAMDLLGEMGMSLYMNKSSDELNFQQE*
Ga0114339_10096009	3300008106	Freshwater, Plankton	HFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEKE*
Ga0114339_10147646	3300008106	Freshwater, Plankton	MLRATLSMHAEIRALYTLVLDIVFVVHLCEEVERPIDLPAIVFEDNQPVIDLTKTLSSKVTQSKHFLMLIEFIREQVEGLIELRKIPTKSNVADVLTKLTLGKAFTIKAMHLLGEMGITIDVNESCEELYYEQE*
Ga0114339_10181063	3300008106	Freshwater, Plankton	MLIEFIRQQVMEGLIELQKIPTESNVADLLAKLIVGKTFTIKTMHLLGEMGMSPDLNESCNELNFEKE*
Ga0114339_10520592	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTKSNIADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114339_10823801	3300008106	Freshwater, Plankton	MLIEFVREQVMEGLIQLQKIPPESNVADLLTKLIVGKTFTIKAMNLLGEMGMSLNVNESYDELNFEQE*
Ga0114339_10963851	3300008106	Freshwater, Plankton	TLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNIADLLTKLNVGKTFTIKAMHLLGEMGMSLNVNEGYDELNFEQE*
Ga0114339_11165432	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELQKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESCDELNFEKE*
Ga0114339_11378371	3300008106	Freshwater, Plankton	FEDNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDKLNFEQE*
Ga0114339_11490412	3300008106	Freshwater, Plankton	MLIEFIRELVMEGLIELQKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSPDVNESCNELNFEKE*
Ga0114339_11524661	3300008106	Freshwater, Plankton	PVIDLTKTLSSKVTRSKHFLMLIEFVREQVMEGLIELRKIPPESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNKSYDELNFEQE*
Ga0114339_11582851	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTESNVADMLTKLIVGKTFTIKAMHLLGEMGMSLNVNKSCDELNFEKE*
Ga0114339_11904701	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELHKIPTESNVADLLTKLIVSKTFTIKAMHLLDEMGMSLNVNESHDELNFEQE*
Ga0114339_11929301	3300008106	Freshwater, Plankton	FLMLIEFIRDQVVEGLIELQKIPTESNVADVLTKLIVGKAFTIKAMHLLGEMGITIDVNESCEELYYEQE*
Ga0114339_11953452	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTESNAADLLTKLIVGKTFTIKATHLLGEMGMSLNVNESYDEPQL*
Ga0114339_12149461	3300008106	Freshwater, Plankton	TLSSKVTESKHFLMLIEFIREQVMEGLIELQKIPTESHVADLLTKLIVGKTFTIKAMHLLGEIGMSLNVNKSYDELNFEKE*
Ga0114339_12569511	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELWKIPTESNVADLLTKLIVSRAFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0114339_12616991	3300008106	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESNDELNFEQE*
Ga0114342_10742112	3300008109	Freshwater, Plankton	EQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114342_11797291	3300008109	Freshwater, Plankton	MLIEFIREQVMEGLINLRKIPTESNIADLLTKLIVSKTFTIKAMHLLGEMGMSLNVNESCDELNFEKE*
Ga0114342_11833191	3300008109	Freshwater, Plankton	MLIEFIREQVMEGLIELQKIPTESNIADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESCDELNFEKE*
Ga0114345_11888651	3300008112	Freshwater, Plankton	VIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKAFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0114348_10885982	3300008115	Freshwater, Plankton	MLIEFLREQVLEELIKLRKIPTESNVADVLTKLIISKAFTIKAMHLLGEMGITIDMNESYEELYYEQE*
Ga0114348_10928601	3300008115	Freshwater, Plankton	MLIEFIREQVMEGLIELQKIPTESNIADLLTKLIVGKTFTIKAMHLLGETGISLNVNKSCDELNFKKE*
Ga0114348_11210241	3300008115	Freshwater, Plankton	QVMEGLIELRKIPTESNVADLLTKLIVGKTFTNKAMHLLGEMGMSLNVNESCDELNFEKE
Ga0114356_10676012	3300008121	Freshwater, Plankton	MLIEFIREQVMEGLIELQKIPTESNIADLLTKLIVGKTFTIKAMHLLGEMGMSLDVNESCDELNFEKE*
Ga0114356_13028462	3300008121	Freshwater, Plankton	CPINLPDIIVEDNQPIIDLTKTLHDKVTRSKHFLMLIEFIREQVLEGLIELKQIPTEMNVADMLTKIIVSKDITTKALHLLGEMGIELDQNSEIDLTYEWE*
Ga0114356_13061401	3300008121	Freshwater, Plankton	EQVIEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSPDVNKSCNELNFEKE*
Ga0114356_13774151	3300008121	Freshwater, Plankton	LSSKVTRSKHFFMLIEFIREQVMEGLIELRKIPTESNIADLLTKLIVGKTFTIKAMHLLGEMGMSPDVNESCNELNCEKE*
Ga0114356_14962832	3300008121	Freshwater, Plankton	MLIEFLREQVLEELIELRKIPTESNVADVLTKLIISKAFTIKAMHLLGEMGITIDMNGSSQELYYEQE*
Ga0114359_11293602	3300008122	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLDVNESCDKLNFEKE*
Ga0114359_11357801	3300008122	Freshwater, Plankton	VIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLIKLRKISTESNVADLLTKLIVGKTFTTKAIHLLGEMGMSLNVNESYDELNFEQE*
Ga0114359_11625902	3300008122	Freshwater, Plankton	MLIEFIREQVMQGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114359_12473821	3300008122	Freshwater, Plankton	LMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114359_12563941	3300008122	Freshwater, Plankton	FEDNQPVIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGRAFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0114359_12690111	3300008122	Freshwater, Plankton	HFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114359_12725231	3300008122	Freshwater, Plankton	HFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVSKTFTIKAMHLLGEMGMSLNVNESCDKLNFEKE*
Ga0114359_13167031	3300008122	Freshwater, Plankton	PAIVFEDNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVSKTFTIKAMHLLGEMGMSLNVNESHDKLNFEQE*
Ga0114337_12107931	3300008262	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0114349_10172487	3300008263	Freshwater, Plankton	MLIEFIREQVMEGLIELRKIPTESNIADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNKSYDELNFEQE*
Ga0114349_10583762	3300008263	Freshwater, Plankton	LCKEVGSPIDLPAIVFEDNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVAYLLTKLIVGKTFTIKAMHLLGEMGMSPDANESCNELNFEKE*
Ga0114349_10707101	3300008263	Freshwater, Plankton	STYAEIRALYTLTLDIIYIMHLCEEVGRPIDLPAIVFEDNQPVIDLTKTLSSKVTRSKHFIMLIEFIREQVMQGLIELQNIPTESDCRQKITIKAMHLLGEMGMSLNVNESYDELDFEQE
Ga0114349_11669551	3300008263	Freshwater, Plankton	PVIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKAFTTKAMHLLGEMGMSLNMNESSDELNFQQE*
Ga0114349_12155601	3300008263	Freshwater, Plankton	PVIDLTKTLSSKITRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNMNESSDELNF*
Ga0114349_12604941	3300008263	Freshwater, Plankton	SKHFLMLIEFIREQVMEGLIELQKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSPDVNESCNELNFEKE*
Ga0114361_11680242	3300008265	Freshwater, Plankton	MLIEFIREQVMEGLIELLKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQA*
Ga0110928_10697081	3300008510	Water Bodies	QPVIDLTKTLHGKVTRSKHFLMLIEFIREQVLEGLIEFRKIAIEANVADMLTKLIVGKAFTMKAMHLLGEMGLELEPEFEHSLTYE*
Ga0102814_106798061	3300009079	Estuarine	HLCEEVGRPIDLPAIVLEDNQPVIDLTKMLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADWLTKLIVGKTFTIKAMHLLGEMGMSLNVNESCDELNFEKE*
Ga0102815_109207131	3300009080	Estuarine	MLIEFVREQVMEGLIKLRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEIGMSLNVNESYDEINFEQE*
Ga0102890_10109951	3300010309	Estuarine	MLIEFIQEQVMEGLIELRKIPTESNVADLLTKLIVGKAFTTKAMHLLGEMGMSLNVNESYDELNFEQE*
Ga0211734_112973841	3300020159	Freshwater	GLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESSDELNFQQE
Ga0211733_106141311	3300020160	Freshwater	KVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEKE
Ga0211726_105169831	3300020161	Freshwater	QPVIDLTKTLSSKVTRSKHFLMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQE
Ga0208305_102084891	3300027753	Estuarine	DLTKTLSSKITRSKHFLMLIEFIREQVVEGLIELHKIPTESNTADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESFNELNYEKD
Ga0208671_101863341	3300027757	Estuarine	DLTKTLNGKVTRSKHFLMLIEFIREQVLEGLIELKKIATEANVADMLTKLIVGKTFTMKAMHLLGEMGLELEPEFEHSLTYE
Ga0208671_102314551	3300027757	Estuarine	KTLSSKVTRSKHFLMLIEFIREQVVEGLIELHKIPTESNTADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESFNELNYEKD
Ga0209985_100829472	3300027806	Freshwater Lake	MHAEIRALYTLVLDIVFVVHLCEEVERPIDLPAIVFEDNQPVIDLTKTLSSKVTQSKHFLMLIEFIREQVEGLIELRKIPTKSNVADVLTKLTLGKAFTIKAMHLLGEMGITIDVNESCEELYYEQE
Ga0209985_100966751	3300027806	Freshwater Lake	AIVFEDNQPVIDLTKTLSSKVTRSKHFLMLIEFIREQAMEGLIELXKIPTKSNIADLLTKLIVGKTFTIKAMHLLGEMGMSLDVNESCDKLNFEKE
Ga0209985_101749802	3300027806	Freshwater Lake	VTRSKHFLMLIEFIKEQVMEGLIELQKTPTESNVADLLTKLVVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEKE
Ga0209985_102066251	3300027806	Freshwater Lake	MLIEFIREQVIEGLIELRKIPTESNVADLLTKLIVGKTFAIKAMHLLGEMGMSPDVNESCNELNFEKE
Ga0209985_102165661	3300027806	Freshwater Lake	IVFEDNQPVIDWTKTLSSKVTKSKHFLMLIEFIREQVMEGLIEVRKIPTESNVADLQTKLIVGKTFTIKAMHLLGEMGMSPDVNESCDELNFEKE
Ga0209985_103118791	3300027806	Freshwater Lake	MLIEFIREQVMEGLIELRKIPTESNVAYLLTKLIVGKTFTIKAMHLLGEMGMSPDANESCNELNFEKE
Ga0209985_103566441	3300027806	Freshwater Lake	IYIVHLCEEVGRPIDLPAIVFEDNQPVIDLTKTLSSKVTRSKHFLMLIEFVREQVVEGLIELRKIPPESNIADLLTKLIVGKTFTIKAMNLLGEMGMSLNVNESYDELNFEQE
Ga0209990_100766112	3300027816	Freshwater Lake	MLIEFIREQVMEGLINLRKIPTESNIADLLTKLIVSKIFTIKAMHLLGEMGMSLNVNKSCDELNFKKE
Ga0209990_100955911	3300027816	Freshwater Lake	LYTLTLNIIYIVHLCKEVGRPIDLPAIVLEDNQPVIDLTKTLSSKVTRSKNFLMLIEFVREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVAAT
Ga0209990_102070581	3300027816	Freshwater Lake	MEGLIELRKIPTESNVAYLLTKLIVGKTFTIKAMHLLGEMGMSPDANESCNELNFEK
Ga0209990_103640611	3300027816	Freshwater Lake	LMLIEFIREQVMEGLIELRKIPTESNVADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESYDELNFEQE
Ga0209668_104545131	3300027899	Freshwater Lake Sediment	QPVIDLTKTLSSKITRSKHFLMLIEFIREQVVEGLIELHKIPTESNTADLLTKLIVGKTFTIKAMHLLGEMGMSLNVNESFNELNYEKD
Ga0209668_107147271	3300027899	Freshwater Lake Sediment	PVIDLAKTLSGKVTRSKHFLMLIEFIREQVLEGLIELRKIASEANVADMLTKLLVGKSFTIKAMHLLGEMGLQLKPEFEQNLTYE
Ga0334977_0581208_13_189	3300033978	Freshwater	MEGLIELRKIPTESNVADLLTKLIVGKTFTTKAMHLLGEMGMSLNVNESYDELNFEQE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085151

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences