Metagenome Family F084893

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084893
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	75 residues
Representative Sequence	FQQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Number of Associated Samples	69
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.61 %
% of genes near scaffold ends (potentially truncated)	86.61 %
% of genes from short scaffolds (< 2000 bps)	91.96 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.679 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.607 % of family members)
Environment Ontology (ENVO)	Unclassified (65.179 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.393 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.06% β-sheet: 7.84% Coil/Unstructured: 45.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01135	PCMT	14.29
PF02586	SRAP	8.04
PF00903	Glyoxalase	4.46
PF13676	TIR_2	1.79
PF05239	PRC	1.79
PF10108	DNA_pol_B_exo2	0.89
PF12706	Lactamase_B_2	0.89
PF12681	Glyoxalase_2	0.89
PF00571	CBS	0.89
PF02538	Hydantoinase_B	0.89
PF02274	ADI	0.89
PF11953	DUF3470	0.89
PF07045	DUF1330	0.89
PF12800	Fer4_4	0.89
PF04392	ABC_sub_bind	0.89
PF13493	DUF4118	0.89
PF04116	FA_hydroxylase	0.89
PF03401	TctC	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	14.29
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	14.29
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	14.29
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	14.29
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	8.04
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.79
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	0.89
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	0.89
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.89
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.89
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.89
COG4874	Uncharacterized conserved protein	Function unknown [S]	0.89
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
All Organisms	root	All Organisms	47.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
cellular organisms	root	All Organisms → cellular organisms	47.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.75 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.25 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.79 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.89 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.36 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.89 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.57 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
unclassified Rhodomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium	0.89 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.57 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Rhodomicrobium sp. Az07	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium → Rhodomicrobium sp. Az07	0.89 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.68 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.57 %
Rhizobium etli CNPAF512	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Rhodomicrobium sp. Az07	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium → Rhodomicrobium sp. Az07	0.89 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02J44NO	Not Available	504	Open in IMG/M
2189573002\|GZIGXIF01DN3W8	Not Available	502	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100414008	Not Available	756	Open in IMG/M
3300005435\|Ga0070714_101907171	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005445\|Ga0070708_101153722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	725	Open in IMG/M
3300005764\|Ga0066903_103282691	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300005764\|Ga0066903_104069541	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005764\|Ga0066903_105075749	Not Available	698	Open in IMG/M
3300005764\|Ga0066903_106033357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	634	Open in IMG/M
3300009792\|Ga0126374_11398335	Not Available	570	Open in IMG/M
3300010366\|Ga0126379_11572908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	763	Open in IMG/M
3300010376\|Ga0126381_102335760	Not Available	768	Open in IMG/M
3300010376\|Ga0126381_102616420	Not Available	722	Open in IMG/M
3300010398\|Ga0126383_10933563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300012955\|Ga0164298_11353645	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012960\|Ga0164301_11743561	Not Available	522	Open in IMG/M
3300012960\|Ga0164301_11861418	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012971\|Ga0126369_11546069	Not Available	753	Open in IMG/M
3300012987\|Ga0164307_10699046	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300012988\|Ga0164306_10898302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300015371\|Ga0132258_11178390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1937	Open in IMG/M
3300015372\|Ga0132256_101598710	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300015374\|Ga0132255_102488668	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300015374\|Ga0132255_105636648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300016270\|Ga0182036_10766839	Not Available	784	Open in IMG/M
3300016270\|Ga0182036_11067292	Not Available	668	Open in IMG/M
3300016294\|Ga0182041_10407608	Not Available	1158	Open in IMG/M
3300016294\|Ga0182041_10771911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	857	Open in IMG/M
3300016294\|Ga0182041_11485698	Not Available	624	Open in IMG/M
3300016294\|Ga0182041_12111404	Not Available	526	Open in IMG/M
3300016319\|Ga0182033_10228242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → unclassified Rhodomicrobium → Rhodomicrobium sp. Az07	1499	Open in IMG/M
3300016341\|Ga0182035_10690692	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300016341\|Ga0182035_11342963	Not Available	641	Open in IMG/M
3300016341\|Ga0182035_12088083	Not Available	515	Open in IMG/M
3300016357\|Ga0182032_10327463	Not Available	1219	Open in IMG/M
3300016357\|Ga0182032_11101597	Not Available	681	Open in IMG/M
3300016371\|Ga0182034_11173055	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300016371\|Ga0182034_12069698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300016404\|Ga0182037_10407741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	1121	Open in IMG/M
3300016404\|Ga0182037_10802937	Not Available	811	Open in IMG/M
3300016422\|Ga0182039_10608079	Not Available	956	Open in IMG/M
3300016422\|Ga0182039_11250511	Not Available	672	Open in IMG/M
3300016422\|Ga0182039_11260571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	669	Open in IMG/M
3300016445\|Ga0182038_12037014	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300021404\|Ga0210389_10839189	Not Available	717	Open in IMG/M
3300022734\|Ga0224571_106609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	776	Open in IMG/M
3300024225\|Ga0224572_1106469	Not Available	519	Open in IMG/M
3300024271\|Ga0224564_1017430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1280	Open in IMG/M
3300025916\|Ga0207663_10669838	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300025929\|Ga0207664_11738946	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300026820\|Ga0207603_107094	Not Available	511	Open in IMG/M
3300027064\|Ga0208724_1003326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1435	Open in IMG/M
3300027698\|Ga0209446_1054298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1015	Open in IMG/M
3300027703\|Ga0207862_1014341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	2340	Open in IMG/M
3300027703\|Ga0207862_1213852	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300031231\|Ga0170824_102157068	Not Available	572	Open in IMG/M
3300031561\|Ga0318528_10557833	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300031572\|Ga0318515_10382649	Not Available	754	Open in IMG/M
3300031573\|Ga0310915_10397363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300031573\|Ga0310915_10966370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300031682\|Ga0318560_10742307	Not Available	530	Open in IMG/M
3300031724\|Ga0318500_10138921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1136	Open in IMG/M
3300031744\|Ga0306918_10642183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300031744\|Ga0306918_11187548	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300031744\|Ga0306918_11547685	Not Available	506	Open in IMG/M
3300031768\|Ga0318509_10514839	Not Available	668	Open in IMG/M
3300031771\|Ga0318546_10654604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	739	Open in IMG/M
3300031781\|Ga0318547_11061182	Not Available	507	Open in IMG/M
3300031796\|Ga0318576_10307328	Not Available	749	Open in IMG/M
3300031833\|Ga0310917_10753941	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300031890\|Ga0306925_11985962	Not Available	549	Open in IMG/M
3300031893\|Ga0318536_10232753	Not Available	937	Open in IMG/M
3300031910\|Ga0306923_10918958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	957	Open in IMG/M
3300031910\|Ga0306923_11255951	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300031910\|Ga0306923_11979256	Not Available	592	Open in IMG/M
3300031912\|Ga0306921_12449226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300031941\|Ga0310912_10009339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6122	Open in IMG/M
3300031941\|Ga0310912_11015443	Not Available	636	Open in IMG/M
3300031941\|Ga0310912_11100127	Not Available	607	Open in IMG/M
3300031942\|Ga0310916_10493075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1043	Open in IMG/M
3300031942\|Ga0310916_11154742	Not Available	642	Open in IMG/M
3300031946\|Ga0310910_10399277	Not Available	1089	Open in IMG/M
3300031946\|Ga0310910_11283310	Not Available	566	Open in IMG/M
3300031947\|Ga0310909_10016577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5206	Open in IMG/M
3300031947\|Ga0310909_10976391	Not Available	693	Open in IMG/M
3300031954\|Ga0306926_10658821	Not Available	1273	Open in IMG/M
3300031954\|Ga0306926_11346648	Not Available	831	Open in IMG/M
3300031954\|Ga0306926_12722527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300032001\|Ga0306922_10874891	Not Available	935	Open in IMG/M
3300032001\|Ga0306922_11301165	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300032001\|Ga0306922_12253350	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300032035\|Ga0310911_10462879	Not Available	735	Open in IMG/M
3300032042\|Ga0318545_10250645	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300032042\|Ga0318545_10253332	Not Available	632	Open in IMG/M
3300032059\|Ga0318533_11317586	Not Available	528	Open in IMG/M
3300032059\|Ga0318533_11409852	Not Available	509	Open in IMG/M
3300032076\|Ga0306924_11780729	Not Available	643	Open in IMG/M
3300032076\|Ga0306924_12061900	Not Available	586	Open in IMG/M
3300032076\|Ga0306924_12222175	Not Available	559	Open in IMG/M
3300032091\|Ga0318577_10130152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1192	Open in IMG/M
3300032094\|Ga0318540_10614086	Not Available	524	Open in IMG/M
3300032261\|Ga0306920_100802548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1381	Open in IMG/M
3300032261\|Ga0306920_101914881	Not Available	833	Open in IMG/M
3300032261\|Ga0306920_103018642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300033289\|Ga0310914_10146290	Not Available	2081	Open in IMG/M
3300033289\|Ga0310914_11055432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300033289\|Ga0310914_11402104	Not Available	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.64%
Host-Associated	Host-Associated	5.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.75%
Plants	Host-Associated → Plants	5.36%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.68%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.93%
Loam	Environmental → Terrestrial → Soil → Loam	9.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022734	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3	Host-Associated	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026820	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-A (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_11782750	2170459003	Grass Soil	ALWQSFEECLSDHLRSYWRGEIDRDEKFCFEAAHVNAMIAVVEVEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS
FE1_07028940	2189573002	Grass Soil	VPFRPPVGAIGGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS
INPhiseqgaiiFebDRAFT_1004140081	3300000364	Soil	HFESLPISLALWEPFEQCLSKHLSELTEGQIDRGEKFWFEAAHVNSMIAVVEAEAVTAAPDLRNWLLSLAAFARRAADRHVGIVFVIS*
Ga0070714_1019071712	3300005435	Agricultural Soil	AHFESLPIPLALWQPFEQCLSEHLSELTEGQIDREENFWFEAVHVNAMIAVVEAEAVTATPDLRNWLLSSAFARRAADRRVGVVFVVS*
Ga0070708_1011537222	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PLALWQSFEECLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRHVGVIFVIS*
Ga0066903_1032826911	3300005764	Tropical Forest Soil	EQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLLSLAAFARRAVDRHVGIVFVIS*
Ga0066903_1040695412	3300005764	Tropical Forest Soil	VPLELWEPFEQSLSEHLSDLTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLVAFARRAVDRHVGVVFVIS*
Ga0066903_1050757492	3300005764	Tropical Forest Soil	LWEPFQQCLSKHLSELTEGQIDREETFRFDAAHVNAMIAVVEAEAVTAAPDLSNWLISLAAFARRAADRHVGVAFVIS*
Ga0066903_1060333572	3300005764	Tropical Forest Soil	PFEQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPNLRDWLLSLATFARRAVDRHVGIVFVIS*
Ga0126374_113983351	3300009792	Tropical Forest Soil	ALWEPFEQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAIDRHVGVVFVIS*
Ga0126379_115729081	3300010366	Tropical Forest Soil	LGQRLLDHLAELYDGEIEREETFSFEPAHLNAVIAVIEAEVVTAAPALRDWLSALAAFARRAADGHVPLVFVME*
Ga0126381_1005285841	3300010376	Tropical Forest Soil	QIDREEKFWFEAAHVNAMIAVLEAEAVTAAPDLRDWLVSLATFARRAADRHVGVVFVVS*
Ga0126381_1023357601	3300010376	Tropical Forest Soil	HLSELTEGQIDREEKFRFEAAHVNAMIAVVEAEAVSAAPELRNWLISLAAFARRAVDRHVGVVFVIS*
Ga0126381_1026164202	3300010376	Tropical Forest Soil	QAHFESLPVPLALWGPFERCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLLTLAAFARRAVDRHVGIVFVIS*
Ga0126383_109335632	3300010398	Tropical Forest Soil	LTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRHVGVVFVIS*
Ga0164298_113536451	3300012955	Soil	PFEQCLSEHLSELTEGQIDREENFWFEAVHVNAMIAVVEAEAVTATPDLRNWLLSSAFARRAADRRVGVVFVVS*
Ga0164301_117435611	3300012960	Soil	AHFESLPVPLALWQSFEECLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS*
Ga0164301_118614181	3300012960	Soil	LWQSFEECLSDHLSELSEGQIDRDETFRFEAAHVNAMIAVVEAEVATAAPELCDWLISLVAFARRAADRHVGVVFVIS*
Ga0126369_115460692	3300012971	Tropical Forest Soil	FEECLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRHVGLVFVIS*
Ga0126369_136329461	3300012971	Tropical Forest Soil	QIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLVAFARRAVDRHVGVVFVIS*
Ga0164307_106990461	3300012987	Soil	HLSELTDGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRTWLLSLAALARRAVDRRVGVGFVIS*
Ga0164306_108983022	3300012988	Soil	SELSEGQIDRDEKFWFEAAHVNAMIAVVEAETVAAAPELRDWLISLVAFARRAADRQVGVVFVIS*
Ga0132258_111783903	3300015371	Arabidopsis Rhizosphere	PFERCLSKHLSELKEGQIDRDEKFWFEAAHVNAMIAVIEAEAVTAAPDLRNWLLSLAAFARRAIDRHVGTVFVIS*
Ga0132256_1015987102	3300015372	Arabidopsis Rhizosphere	WQPFEQCLCEHLSELTEGQIDREESFWFEAAHVNAMVAVVEAEAITATPDLRNWLLSLAAFARRAADRHVGVVFVVS*
Ga0132255_1024886681	3300015374	Arabidopsis Rhizosphere	EHLSELTEGQIDREESFWFEAAHVNAMVAVVEAEAITATPDLRNWLLSLAAFARRAVDRRVGVAFVIS*
Ga0132255_1056366481	3300015374	Arabidopsis Rhizosphere	GQIDREEKFRFEAAHVNAMIAVIEAEAVTAAPDLRNWLLSLAAFARRAIDRHVGTVFVIS
Ga0182036_107668392	3300016270	Soil	LPVPLALWGPFERCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLLSLAAFARRAVDRHVGIVFVIS
Ga0182036_110672922	3300016270	Soil	PLALSAPFQQCLSKHLSELTEGQIDREEMSWFDAAHVNAMIAVVEAEAVIAAPDVRNWLTSLAAFARRAVDRHVGIVFVIS
Ga0182041_104076081	3300016294	Soil	LSEHLSELTEGQIDREEKFRFEAAHVNAMIAVVEAEAVSAAPELRNWLISLAAFARRAVDRHVGVVFVIS
Ga0182041_107719112	3300016294	Soil	TEGQIDREEKFGFDAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAAVRHVGVVFVIS
Ga0182041_114856981	3300016294	Soil	GQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Ga0182041_121114041	3300016294	Soil	ALWEPFERCLSKHLSELTEGQIDREETFWFEAAHVNAMIAVVEAEAVAAAPDLRDWLTALAAFARRTADRHMQRLICAQYGFREPGLW
Ga0182033_102282421	3300016319	Soil	LTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLTLLAAFARCAADRHVSVVFVIS
Ga0182035_106906922	3300016341	Soil	RHFESLPVPLAVWEPFEQSLSAHLSELTEGQIDREEKFWFEAAHVNAMIAVLEAEAVTAAPDLRDWLVSLATFARRAADRHVGVVFVVS
Ga0182035_113429632	3300016341	Soil	TEGQIDREEKFRFEAAHVNAMIAVVEAEAVSAAPELRNWLISLAAFARRAVDRHVGVVFVIS
Ga0182035_120880831	3300016341	Soil	DQCLSKHLSELTDGEIDREEKFWFEAAHVDAMIAVVEAEAVTATPDLRNWLLLLAAFARRAVDRRVGVGFVIS
Ga0182032_103274631	3300016357	Soil	CLSKHLSELTEGEIDREETFWFEAAHVSAMIAVVEAEAVTAAPELRGWLTSLAAFARRAVDRHVGVVFVIS
Ga0182032_111015971	3300016357	Soil	SLSVPLALWEPFEQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLTSLAAFARRAVDRHVGIVFAIS
Ga0182034_111730552	3300016371	Soil	GMLVTGKHLSELTEGQIDRDDARVNAMIAVLEAEAVTAAPDLRDWLVSLATFARRAADRHVGVVFVVS
Ga0182034_120696981	3300016371	Soil	PLALWEPFQQCLSKHLSELTEGQIDREEKFCFEAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAALARRAADRHVGVGFVIS
Ga0182037_104077411	3300016404	Soil	HFETLPVPLALWEPFEQSLSEHLSDLTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRHVGVVFVIS
Ga0182037_108029372	3300016404	Soil	PFQQCLSKHLSELTEGQIDREETFRFDVAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVIFVIC
Ga0182039_106080791	3300016422	Soil	PFERCLSKHLSELTEGQIDREEKFWFDAAHVNAMIAVVEAEAVTAAPDLRHWLLSLAAFARRAIDRHVGVAFVIS
Ga0182039_112505111	3300016422	Soil	LWEPFQQCLSKHLSELTEGEIDREEKFWFDAAHVNAMMIAVVEASPDLRDCFLSLAAFARRTVDRHEGLVFVIS
Ga0182039_112605711	3300016422	Soil	ALWEPFQQCLSKHLSELTEGQIDREETCSFEAAHVNPMIAVVEAEAVAAAPKLRDWLTALAAFARRAVDRHVGVIFVIS
Ga0182038_120370141	3300016445	Soil	FQQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPELRDWLMSLAAFARRAADRHVGVVFVIS
Ga0210389_108391892	3300021404	Soil	RLWEPFEQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLLSLTAFARRAVDRYVGIVFVIS
Ga0210402_109408792	3300021478	Soil	IDRDEKFRFEAAHVNAMIAVVEAEVATAAPELCDWLISLVAFARRAADRHVGVVFVIS
Ga0224571_1066092	3300022734	Rhizosphere	PGALWQSFEECLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS
Ga0224572_11064691	3300024225	Rhizosphere	GALWQSFEECLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS
Ga0224564_10174303	3300024271	Soil	GALWQSFEECLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLAAFARRAADRQVGVVFVIS
Ga0207663_106698382	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	WEPFEQSLSAHLSELTEGQIDREEKFWFEAAHVNAMIAVLEAEAVTAAPDLRDWLVSLATFARRAADRHVGVVFLVS
Ga0207664_117389462	3300025929	Agricultural Soil	LWQPFEQCLSEHLSELTEGQIDREENFWFEAVHVNAMIAVVEAEAVTATPDLRNWLLSSAFARRAADRRVGVVFVVS
Ga0207603_1070941	3300026820	Soil	LALWEPFQQCLSKHLSELTEGQIDREEKFWFEAAHVNTMIAVVEAEEVTAAPDLRNWLISLAAFARRALDRRVGVVFVIS
Ga0208724_10033263	3300027064	Forest Soil	CLSDHLSELSEGQIDRDEKFWFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS
Ga0209446_10542982	3300027698	Bog Forest Soil	SLPVPLALWQSFEECLSDHLSELSEGQIDHDEKFRFEAAHVNAMIAVVEAEAVAAAPELRDWLISLVAFARRAADRQVGVVFVIS
Ga0207862_10143411	3300027703	Tropical Forest Soil	IALWEPFQQCLSKHLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTPALDLRDWLMSLAALARRAADRHVGVVFVIS
Ga0207862_12138521	3300027703	Tropical Forest Soil	KHLSELTEGQIDREEKFWFQAAHVNAMIAVVEAEAVTAAPDLRTWLISLAAFARRAIDRHVGVVFVIS
Ga0170824_1021570682	3300031231	Forest Soil	SELSEGQIDRDEKFWFEAVHVNSMIAVVEAEAVAAAPELRDWLISLVAFARRAADRHVGVVFVIS
Ga0318528_105578332	3300031561	Soil	LSELTEGQIDREEKFWFEAAHVNAMIAVLEAEAVTAAPDLRDWLVSLATFARRAADRHVGVVFVVS
Ga0318515_103826491	3300031572	Soil	YLSKHLSELTEGEIDRDETFWFETANVNAMIAVVEAEAVTAAPDLRDWLTLLAAFARCAADRHVSVVFVIS
Ga0310915_103973631	3300031573	Soil	ALWEPFEQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLTSLAAFARRAVDRHVGIVFAIS
Ga0310915_109663702	3300031573	Soil	VPLAEWEPFQQRLSKHLSELTEGQIDREETFWFEAAHVNAMIAVVEAEAVAAAPDLRDRRAADRHVGIVFAIS
Ga0318560_107423071	3300031682	Soil	LTEGQIGREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLLSLAAFARRAVDRHVGIVFVIS
Ga0318500_101389211	3300031724	Soil	PFQQCLSEHLSELTEGQIDRDETFRFEAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVLS
Ga0306918_106421831	3300031744	Soil	NHLSELTEGQIDREETFRFDATHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVIFVIC
Ga0306918_111875481	3300031744	Soil	LALWEPFQQCLSKHLSELTEGQIDRDEKFWFEAGHVNAMIAVVEAEAVTAAPDLCYWLISLAAFARRAADRHVGVVFVIS
Ga0306918_115476851	3300031744	Soil	PLAQWHSFDQCLSKHLSELTDGEIDREEKFWFEAAHVDAMIAVVEAEAVTATPDLRNWLLLLAAFARRAVDRRVGVGFVIS
Ga0318509_105148391	3300031768	Soil	LPIPLALWEPFQQCLSKHLSELTEGQIDREETFRFDVAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVIFVIC
Ga0318546_106546042	3300031771	Soil	ESLSVPLALWGPFEQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLLSLAAFARRAVDRHVGIVFVIS
Ga0318547_110611821	3300031781	Soil	SLPVPLTLWEPFQQCLSEHLSELTEGQIDRDETFRFEAAHVNAMIAVVEAEAVTAAPELRDWLMSLAAFARRAADRHVGVVFVIS
Ga0318576_103073281	3300031796	Soil	QYLSKHLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLISLVALARRAADRHVGVVFVLS
Ga0310917_107539412	3300031833	Soil	IDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRHVGIGFAIS
Ga0306925_119859621	3300031890	Soil	LSELTEGQIDREETFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRRVGIVFAIS
Ga0318536_102327531	3300031893	Soil	KHLSELTEGQIDREEQFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLTLLAAFARCAADRHVSVVFVIS
Ga0306923_109189583	3300031910	Soil	PVPLALWQPFEKCLCEYLSELTEGQFDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAALARRAVDRHVGVVFDIS
Ga0306923_112559512	3300031910	Soil	LPVPLAVWEPFEQSLSAHLSELTEGQIDREEKFWFEAAHVNAMIAVLEAEAVTAAPDLRDWLVSLATFARRAADRHVGVVFVVS
Ga0306923_119792561	3300031910	Soil	LWEPFQQCLSKHLSELTEGQIDREETFRFDVAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVIFVIC
Ga0306921_124492262	3300031912	Soil	MAWCRRTMTGAQFASLPVPLALWEPFQQYLSKHLSELTEGEIDRDETFSFEAAHVNAMIAVVDAEAVTVPPDLCDWLMSLAALARRAADRHVGVVFVIS
Ga0310912_100093395	3300031941	Soil	LPVPLALWEPFQQCLSKHLSELTEGQIDREEQFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLTLLAAFARCAADRHVSVVFVIS
Ga0310912_110154431	3300031941	Soil	PFEQCLSKHLSELTEGQIDREETFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRHVGIGFAIS
Ga0310912_111001272	3300031941	Soil	FQQCLSKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Ga0310916_104930751	3300031942	Soil	VPLALWEPFEQRLSRHLSELTEGQIDREEKFWFDAAHVNAMIAVVEAEAVTAAPDLREWLTSLAAFARRAFDRHVGVVFVIS
Ga0310916_111547421	3300031942	Soil	SVPLALWEPFQQCLSKHLSELTEGQIDREEKFGFDAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Ga0310910_103992773	3300031946	Soil	PLALWEQFEQCLSKHLSELTEGQIDREEKFRFDAAHVNAMIAVVEAEAVTAASDLRDWLMSLVAFARRAVDRHVSVVFVIS
Ga0310910_112833101	3300031946	Soil	HLSELTDGEIDREEKFWFEAAHVDAMIAVVEAEAVTATPDLRNWLLLLAAFARRAVDRRVGVGFVIS
Ga0310909_1001657711	3300031947	Soil	GAFESLPVPLALWEPFQQCLSKHLSELTEGQIDREEQFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLTLLAAFARCAADRHVSVVFVIS
Ga0310909_109763913	3300031947	Soil	AHFESLPVPLALWEPFEQCLSEHLSELTEGQIDREEKFRFEAAHVNAMIAVVEAEAVSAAPELRNWLISLAAFARRAVDRHVGVVFVIS
Ga0306926_106588212	3300031954	Soil	SLSKHLSELTEGQIDREETFWFDAAHVNTMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Ga0306926_113466482	3300031954	Soil	LSELTEGQIDREEKFWFDAAHVNAMIAVVEAEAVTAAPDLRHWLLSLAAFARRAIDRHVGVAFVICSTR
Ga0306926_122268992	3300031954	Soil	DREETFWFEAAHVNAMIAVVEAEAVTAAPELRDWLMSLAAFARRAADRHVGVAFVIS
Ga0306926_127225271	3300031954	Soil	EPFQQCLSKHLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTAVSELRDWLISLAAFARRAADRHVGVVFVIS
Ga0306922_108748912	3300032001	Soil	MELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTATPELRDWLISLAAFARRAADRHVGVVFVIS
Ga0306922_113011652	3300032001	Soil	VWEPFEQSLSAHLSELTEGQIDREEKFWFEAAHVNAMIAVLEAEAVTAAPDLCDWLVSLATFARRAADRHVGVVFVVS
Ga0306922_122533502	3300032001	Soil	SLPVPLELWEPFQQCLSKHLSELTEGQIDREETFRFDAAHINAMIAVVEAEAVTAAPNLCYWLISLAAFARRAADRRVGVVFVIS
Ga0318507_102284131	3300032025	Soil	DREEKFWFEAAHVNAMIAVVEAEAVAAAAPELRDWLMSLAAFARRAADRHVGVIFVIC
Ga0310911_104628791	3300032035	Soil	MARCRRQAHFESLPVPLALWEPFQQSLSKHLSELTEGQIDREETFWFDAAHVNTMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Ga0318545_102506451	3300032042	Soil	MTRRVLRGLPVPLALWEPFQQCLSKHLSELTEGQIDREEQFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVIS
Ga0318545_102533321	3300032042	Soil	EGQIDREEKFWFEAAHVNAMIAVVEAQTVTAAPELRDWLMSLADFARRAADRHVGVVFVI
Ga0318533_113175862	3300032059	Soil	LSEHLSDLTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRHVGVVFVIS
Ga0318533_114098521	3300032059	Soil	LSEHLSELTEGQIDRDETFRFEAAHVNAMIAVVEAEAVTAAPELRDWLMSLAAFARRAADRHVGVVFVIS
Ga0306924_117807292	3300032076	Soil	VQGGSEWEPFEQCLCKHLSELTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAARDLRNWLISLAAFARRAADRHVGVVFVIS
Ga0306924_120619002	3300032076	Soil	QCLCEHLSELTEGQIDREDRFWFEAAHVNAMIAVVEAEAISAGPELRTWLNSLAAFARRAVDRHVGVFFDIS
Ga0306924_122221751	3300032076	Soil	SKRLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTAAPELHDWLMSLAAFARRAADRHVGVVFVLS
Ga0318577_101301521	3300032091	Soil	YLSKHLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTAAPDLRDWLMSLAAFARRAADRHVGVVFVLS
Ga0318540_106140861	3300032094	Soil	NQAHFESLPVPLALWEPFQQCLSEHLSELTEGQIDRDETFRFEAAHVNAMIAVVEAEAVTAAPELRDWLMSLAAFARRAADRHVGVVFVIS
Ga0306920_1008025481	3300032261	Soil	QCLSKHLSELTEGQIDREEKFWFEAEHVNAMIAVVEAEAVTAAPDLRNWLLSLAAFARRAVDRHVGIVFVIS
Ga0306920_1019148812	3300032261	Soil	LSELTEGQIDREEKFWFDAAHVNAMIAVVEAEAVTAAPDLRHWLLSLAAFARRAIDRHVGVAFVIS
Ga0306920_1030186422	3300032261	Soil	LSALTEGQIDREETFSFEAAHVNAMIAVVEAEAVATAPDLRDWLMALAAFARRAADRHVSVVFVIS
Ga0310914_101462905	3300033289	Soil	MVPSDDDQTRFESLPVPLALWDPFQQRLSKHLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEVVAAAPDLRDWLISLATFARRAADRHVG
Ga0310914_110554322	3300033289	Soil	QRLSKRLSELTEGQIDREEMFWFDAAHVNAMIAVVEAEAVTAAPELHDWLMSLAAFARRAADRHVGVVFVLS
Ga0310914_114021041	3300033289	Soil	LWEPFEQSLSEHLSDLTEGQIDREEKFWFEAAHVNAMIAVVEAEAVTAAPDLRNWLISLAAFARRAVDRHVGVVFVIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084893

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences