Metagenome / Metatranscriptome Family F084884

Overview

Basic Information

• Family ID: F084884
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 112
• Average Sequence Length: 46 residues
• Representative Sequence: VHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLA
• Number of Associated Samples: 74
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 10.38 %
• % of genes near scaffold ends (potentially truncated): 85.71 %
• % of genes from short scaffolds (< 2000 bps): 85.71 %
• Associated GOLD sequencing projects: 73
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (88.393 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat (16.071 % of family members)
• Environment Ontology (ENVO): Unclassified (19.643 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (30.357 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 28.17%
  β-sheet: 0.00%
  Coil/Unstructured: 71.83%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF14106	DUF4279	2.68
PF13470	PIN_3	1.79
PF04471	Mrr_cat	1.79
PF12158	DUF3592	1.79
PF05015	HigB-like_toxin	1.79
PF02371	Transposase_20	1.79
PF03683	UPF0175	1.79
PF13546	DDE_5	0.89
PF09685	DUF4870	0.89
PF00075	RNase_H	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	1.79
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.79
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	1.79
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.89
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.89
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.89
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.89
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.89
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.29 %
Unclassified	root	N/A	10.71 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.39 %
Unclassified	root	N/A	10.71 %
Viruses	superkingdom	All Organisms → Viruses	0.89 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Unclassified	root	N/A	10.71 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	25.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.50 %
Unclassified	root	N/A	10.71 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	23.21 %
Candidatus Hydrogenedentes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes	0.89 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	33.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.79 %
Lentisphaerae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Unclassified	root	N/A	10.71 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.89 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	8.93 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobi	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.79 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Ignavibacteriae	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae	21.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Unclassified	root	N/A	10.71 %
unclassified Candidatus Hydrogenedentes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes	0.89 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	16.07 %
unclassified Lentisphaerota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota	0.89 %

Level 7

Name	Rank	Taxonomy	Distribution
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	4.46 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.71 %
Chloroflexi bacterium HGW-Chloroflexi-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-3	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-5	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1.79 %
Chloroflexi bacterium RBG_13_50_21	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_50_21	0.89 %
Chloroflexi bacterium RBG_19FT_COMBO_47_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_9	0.89 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.89 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.79 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	21.43 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.89 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.89 %
Unclassified	root	N/A	10.71 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	4.46 %

Level 8

Name	Rank	Taxonomy	Distribution
Anaerolineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae	3.57 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2.68 %
Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	1.79 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.71 %
Chloroflexi bacterium HGW-Chloroflexi-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-3	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-5	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1.79 %
Chloroflexi bacterium RBG_13_50_21	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_50_21	0.89 %
Chloroflexi bacterium RBG_19FT_COMBO_47_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_9	0.89 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.89 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.89 %
Eubacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae	0.89 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.89 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Pseudanabaenaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae	0.89 %
Unclassified	root	N/A	10.71 %
unclassified Anaerolineales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales	0.89 %
unclassified Ignavibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria	21.43 %

Level 9

Name	Rank	Taxonomy	Distribution
Acetobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium	0.89 %
Anaerolinea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea	1.79 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2.68 %
Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	1.79 %
Anaerolineales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.71 %
Chloroflexi bacterium HGW-Chloroflexi-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-3	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-5	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1.79 %
Chloroflexi bacterium RBG_13_50_21	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_50_21	0.89 %
Chloroflexi bacterium RBG_19FT_COMBO_47_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_9	0.89 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → environmental samples	0.89 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	21.43 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.89 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Pseudanabaena	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena	0.89 %
Unclassified	root	N/A	10.71 %
unclassified Anaerolineaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae	1.79 %
unclassified Clostridiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae	0.89 %

Level 10

Name	Rank	Taxonomy	Distribution
Acetobacterium bakii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium bakii	0.89 %
Anaerolinea thermolimosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	1.79 %
Anaerolineaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1.79 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2.68 %
Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	1.79 %
Anaerolineales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobium/Pelodictyon group	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.71 %
Chloroflexi bacterium HGW-Chloroflexi-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-3	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-5	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1.79 %
Chloroflexi bacterium RBG_13_50_21	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_50_21	0.89 %
Chloroflexi bacterium RBG_19FT_COMBO_47_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_9	0.89 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.89 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	21.43 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Unclassified	root	N/A	10.71 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	0.89 %
unclassified Pseudanabaena	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena	0.89 %
uncultured Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → environmental samples → uncultured Desulfobacteraceae bacterium	0.89 %

Level 11

Name	Rank	Taxonomy	Distribution
Acetobacterium bakii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium bakii	0.89 %
Anaerolinea thermolimosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	1.79 %
Anaerolineaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1.79 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2.68 %
Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	1.79 %
Anaerolineales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.71 %
Chloroflexi bacterium HGW-Chloroflexi-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-3	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-5	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1.79 %
Chloroflexi bacterium RBG_13_50_21	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_50_21	0.89 %
Chloroflexi bacterium RBG_19FT_COMBO_47_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_9	0.89 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.89 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	21.43 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.89 %
Phycicoccus sp. MQZ13P-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. MQZ13P-5	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Pseudanabaena sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena → Pseudanabaena sp.	0.89 %
Unclassified	root	N/A	10.71 %
uncultured Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → environmental samples → uncultured Desulfobacteraceae bacterium	0.89 %

Level 12

Name	Rank	Taxonomy	Distribution
Acetobacterium bakii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium bakii	0.89 %
Anaerolinea thermolimosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa	1.79 %
Anaerolineaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1.79 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2.68 %
Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium CG_4_9_14_0_8_um_filter_58_9	1.79 %
Anaerolineales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	0.89 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.89 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.89 %
Chlorobium chlorochromatii	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae → Chlorobium/Pelodictyon group → Chlorobium → Chlorobium chlorochromatii	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.71 %
Chloroflexi bacterium HGW-Chloroflexi-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-3	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-5	0.89 %
Chloroflexi bacterium HGW-Chloroflexi-6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium HGW-Chloroflexi-6	1.79 %
Chloroflexi bacterium RBG_13_50_21	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_50_21	0.89 %
Chloroflexi bacterium RBG_19FT_COMBO_47_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_9	0.89 %
Clostridiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	0.89 %
Ignavibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	21.43 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.89 %
Phycicoccus sp. MQZ13P-5	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. MQZ13P-5	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %
Pseudanabaena sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Pseudanabaenaceae → Pseudanabaena → unclassified Pseudanabaena → Pseudanabaena sp.	0.89 %
Unclassified	root	N/A	10.71 %
uncultured Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → environmental samples → uncultured Desulfobacteraceae bacterium	0.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300013126|Ga0172367_10003296	All Organisms → cellular organisms → Bacteria	21112
(restricted) 3300028571|Ga0247844_1333351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	504
(restricted) 3300029268|Ga0247842_10665137	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	513
3300000230|TB_GS10_10DRAFT_10056066	All Organisms → Viruses → Predicted Viral	1761
3300000233|TB_FS06_10DRAFT_1003307	All Organisms → cellular organisms → Bacteria	7461
3300000233|TB_FS06_10DRAFT_1005965	All Organisms → cellular organisms → Bacteria	5217
3300000233|TB_FS06_10DRAFT_1043859	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	1084
3300000236|TB_FS08_3DRAFT_1031398	All Organisms → cellular organisms → Bacteria	847
3300000236|TB_FS08_3DRAFT_1061972	Not Available	515
3300001373|YBMDRAFT_10150236	Not Available	572

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	8.04%
Environmental	Environmental	91.96%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	71.43%
Lab Enrichment	Engineered → Lab Enrichment	0.89%
Terrestrial	Environmental → Terrestrial	20.54%
Wastewater	Engineered → Wastewater	7.14%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	6.25%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.89%
Freshwater	Environmental → Aquatic → Freshwater	53.57%
Marine	Environmental → Aquatic → Marine	7.14%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.79%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	0.89%
Peat	Environmental → Terrestrial → Peat	9.82%
Sediment	Environmental → Aquatic → Sediment	8.93%
Soil	Environmental → Terrestrial → Soil	10.71%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	12.50%
Ice	Environmental → Aquatic → Freshwater → Ice	1.79%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.68%
Lake	Environmental → Aquatic → Freshwater → Lake	23.21%
Loam	Environmental → Terrestrial → Soil → Loam	0.89%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.89%
Pond	Environmental → Aquatic → Freshwater → Pond	0.89%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.71%
Sediment	Environmental → Aquatic → Marine → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.68%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	0.89%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.82%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.79%

Subtype

Habitat	Taxonomy	Distribution
Cave Water	Environmental → Aquatic → Freshwater → Groundwater → Cave Water	5.36%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.89%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	17.86%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	7.14%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	2.68%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	3.57%
Anaerobic Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture	0.89%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.82%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.46%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.89%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.89%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.25%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater	5.36%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.89%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.89%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.89%
Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat	16.07%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.79%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.89%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.68%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.79%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.89%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.68%
Sinkhole	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole	2.68%
Sinkhole Freshwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater	6.25%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.79%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	0.89%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.89%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.89%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.89%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000230	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS10_10	Environmental
3300000233	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS06_10	Environmental
3300000236	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- FS08_3	Environmental
3300001373	YB-Mouth-sed	Environmental
3300002024	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1k-1.5k	Environmental
3300002027	Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1.5k-5k	Environmental
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental
3300004209	Groundwater microbial communities from aquifer - Crystal Geyser CG22_combo_CG10-13_8/21/14_all	Environmental
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental
3300005077	Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
TB_GS10_10DRAFT_100560662	3300000230	Groundwater	VHPTLGILARFQAFFYASAFFQLDGVPPPTPARVTQTVGTLLDVIGIQ
TB_FS06_10DRAFT_100330714	3300000233	Groundwater	MHPTLGSLARFQAFFYASAFFQSDGVPPPDPARVTQTVGRLNT*
TB_FS06_10DRAFT_10059657	3300000233	Groundwater	QSVHPTLGILARFQAFFYALSFSQSDGVPPPAPARVTQTVGTPLA*
TB_FS06_10DRAFT_10438591	3300000233	Groundwater	QSVHPTLGILARFQAFFYASAFFQSDGVPPPAPAQVTQTVGRFRAKHTK*
TB_FS08_3DRAFT_10313981	3300000236	Groundwater	QSVHPTLGILARFQAFFYASAFSQSDGVPPPDPARVTQTIGTTRA*
TB_FS08_3DRAFT_10619722	3300000236	Groundwater	PALGILARFKAFFYASAFFQSDGVPPPAPARVTQTVGTTLAKLKFQ*
YBMDRAFT_101502361	3300001373	Marine Estuarine	QNAQQSVHPTLGILARFQAFFYASAFFQSDGVPPPDPARVTQTVGR*
MIS_10579301	3300002024	Sinkhole Freshwater	RFQAFFYASAFFQSDGVPPPAPARVTQTVGTPLAQQGK*
MIS_11436591	3300002024	Sinkhole Freshwater	SVHPTLGILARFQAFSYASAFSQSDGVPPPDPARVTQTVGTPLA*
MIS_11520271	3300002024	Sinkhole Freshwater	TLGILARFQAFFYASAFSQLDGVPPPNPARVTQTVGTPLA*
MIS_11663291	3300002024	Sinkhole Freshwater	FQAFFYASAFFQSDGVPPPAPARVTQTVSHPLPYQG*
MIS_100945111	3300002027	Sinkhole Freshwater	QQSVHPTLGIRRHFQAFSYASTFFQSDGVPPPAPARVTQTVSRFV*
MIS_101607191	3300002027	Sinkhole Freshwater	QSVHPTLGILARFQAFFYTSAFSQSDGVPPPDPARVTQTVGRWRMQQNLFENL*
MIS_101729251	3300002027	Sinkhole Freshwater	QSVHPTLGIRRHFQAFFYASAFSQSDGVPPPAPARVTQTVGRLVSKG*
Ga0055440_101540462	3300004020	Natural And Restored Wetlands	LGILRKSQAVFYAFSFFQSDGFAVPAPAQVTQTGRHLRVTQIP*
Ga0066649_102328371	3300004209	Groundwater	PTLGILARFQAFFYASAFSQSDGDPPPAPARVTQTVIGA*
Ga0062380_104973602	3300004779	Wetland Sediment	PTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVSPILSVDA*
Ga0071116_10370953	3300005077	Sinkhole	MRRKINFFTTASQQSVHLTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGWLIVIQ
Ga0071116_11198282	3300005077	Sinkhole	VHPTLGILARFQAFFYALSFFQSDGVPPPAPARVTQTVGRWRYEGQKLK*
Ga0071116_12655372	3300005077	Sinkhole	KACQQSVHPTLGSLARFQAFFYASAFFQLDGVPPPAPARVTQTVGRFLAQPK*
Ga0074473_103569542	3300005830	Sediment (Intertidal)	LIAKVAAQHSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVR
Ga0074471_106558695	3300005831	Sediment (Intertidal)	VHPTLGILARFQAFFYASAFFQSDGVPPPTPARVTQTVGRYVRNE*
Ga0074471_106559882	3300005831	Sediment (Intertidal)	VHPTLGILARFQAFFYASAFFQSDGVPPPTPARVTQTVGQFLANNEV*
Ga0075277_10049952	3300005895	Rice Paddy Soil	VHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTV
Ga0075272_10643642	3300005900	Rice Paddy Soil	AQQSVHPTLGSLATFQAVFYAFSFSQSDGFAVPAPARVTQTVGR*
Ga0075280_100050981	3300005904	Rice Paddy Soil	VHPTLGSLRDLQAFFYASAFSQSDGVPPPAPARVTQTVGRWR
Ga0075156_104433771	3300005982	Wastewater Effluent	HPTLGILARFQAFFYASAFFQSDGVPSPAPARVTQTVSRLS*
Ga0105105_102075871	3300009009	Freshwater Sediment	SVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVSPPFEKQVSDKKW*
Ga0105105_102750571	3300009009	Freshwater Sediment	LARFQAFFYTSAFFQSDGVPPPAPARVTQTVGWLVINREK*
Ga0105105_102763411	3300009009	Freshwater Sediment	QSVHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQSVGLLAQI*
Ga0105105_105811463	3300009009	Freshwater Sediment	MLGSLARFQAFFYALSFFQSDGVPPPAPARVTQTVSLPLA*
Ga0105048_113083521	3300009032	Freshwater	LRSKKPTQVTTAQQSVHPTLGILRGLQAFFYASVFFRSDGAPPPAPARVTQTVGQF
Ga0105091_101259091	3300009146	Freshwater Sediment	MFSAAQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTV
Ga0113563_110072303	3300009167	Freshwater Wetlands	ILARFQAFFYASAFSQSDGVPPPAPAQVTQTVGRFTAKHNHDS*
Ga0115028_102789362	3300009179	Wetland	NKTAAQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVSRLSKIEMK*
Ga0123573_121713862	3300009509	Mangrove Sediment	MAAQHRVHPTLGIRSVLQALSNALAFSNADGVPPPAPAQVTQTV
Ga0137331_10413721	3300011391	Soil	VHPTLGSLARFQAFFYASAFSQSDGVPPPDPARVTQTVGWQVKE
Ga0137460_10273913	3300011408	Soil	PTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVGKNLA*
Ga0137448_11488221	3300011427	Soil	SYPKTATQQSVHPTLGILRQSQAFFHASAFSQSDGVPPPDPARVTPTVSHLAEN*
Ga0136636_102467491	3300012044	Polar Desert Sand	LGSLATSQAFFYALSFFRSDGVPPPAPARVTQTVGQFIGE*
Ga0138256_104869931	3300012533	Active Sludge	VHPTLGILAKSQAFFYALSFFQSDGVPPPDPARVTQTVGRLEKEEDYH
Ga0138256_106475822	3300012533	Active Sludge	VHPTLGILARFQAFFYASAFFQSDGIPPPAPARVTQTVSHLPCKNNYE*
Ga0138256_108847301	3300012533	Active Sludge	ILARFQAFFYASAFFQSDGVPPPAPARVTQTVGRLSDRIMK*
Ga0138256_109407551	3300012533	Active Sludge	QSMHLTLGILRQSQAVFYASSFFQLDGFAVPTPARVTQTVGRLTQLD*
Ga0163199_14046831	3300013092	Freshwater	QQSMHPTLGSLARFQAFFYASAFFQSDGVPPPDPARVTQTVGQFLEK*
(restricted) Ga0172367_1000329619	3300013126	Freshwater	MTLHTAEQSAHPTLGILAQFQAFFQSDGVPPPAPARVMQAISQPATIETI*
(restricted) Ga0172373_103174651	3300013131	Freshwater	MSLLLPQKSGWQKRAQQSVHPTLGILARFQAFFYASAFSQSDGVPPPDPARVTQTV
Ga0075315_10018502	3300014258	Natural And Restored Wetlands	QQSVHPTLGSLARFQAFFYASAFFQSDGVPPPAPARVTQTVGRVS*
Ga0075360_11132382	3300014261	Natural And Restored Wetlands	VHPTLGSLARFQAVFYALSFFQLDGFAVPAPARVTQTVG
Ga0182021_112465261	3300014502	Fen	MHPTLGILARFQAFSYASAFFQSDGVPPPAPARVTQTV
Ga0180074_10267631	3300014877	Soil	MKAAQQSVQWICGILPHFQAFFYASAFSQSDGVPPPAPARVTQTVGQIDR*
Ga0180085_10999442	3300015259	Soil	VHLTPGSLRRFQAFFYASAFFQLDGFAVPAPAQVRQTVGRL*
Ga0184615_104776391	3300018059	Groundwater Sediment	EYTPQNAAQQSVHPTLGILARFQAFLYASAFFQLGGVPPPNPARVTQTVGQFQECK
Ga0207193_14203443	3300020048	Freshwater Lake Sediment	PTLGILARFQAFFYALSFSQSDGVPPPAPARVTQTVGTPLAQ
Ga0194120_100427413	3300020198	Freshwater Lake	VHPTLGILARFQAFFYASAFFQSDGVPPPAPAQVTQTVGTPLAQQGKKH
Ga0210379_102782872	3300021081	Groundwater Sediment	TTAAQQSVHPTLGILARFQAFFYASEFFQSDGVPPPTPARVTQTVSRLLHN
Ga0210377_101745003	3300021090	Groundwater Sediment	QQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVSWQIHSL
Ga0210377_103926801	3300021090	Groundwater Sediment	LARFQAFFYASAFSQLDGVPPPAPARVTQTVGQFKTITAIKV
Ga0210377_105140531	3300021090	Groundwater Sediment	LASLVVIGFAQQSVHPTLGILARFQAFFYASAFFQLDGVPPPAPARVTQTVGL
Ga0210365_106761852	3300021351	Estuarine	VHPTLGILARFQAFFYALSFSQSDGGTPSAPARLTHTVSPQPRRLLW
Ga0224495_100500254	3300022208	Sediment	ACQQSVHPTLGILARFQAFFYASAFFQSDSVPPPTPARVTQTVRRVRQIVLL
Ga0209751_108438432	3300025327	Soil	QSVHPTLGILRHFQAFSYTSAFFQSDGVPPPTPARVTQTVGQLEKL
Ga0210129_10356801	3300026026	Natural And Restored Wetlands	VKQKASQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRLSSVHSA
Ga0209285_101400391	3300027726	Freshwater Sediment	LGILARFQAFFYASAFSQLDGFAVPAPARVTQTVRRVMVQ
Ga0209575_100320252	3300027739	Freshwater	MHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQAVGLLS
Ga0209288_100634251	3300027762	Freshwater Sediment	ILARFQAFFYASAFSQSDGVPPPAPARVTQTVGQQTFE
Ga0208980_103205482	3300027887	Wetland	VHPTLGILARFQAFFYASAFSQSDGFAVPAPARVTQTVSPFFANIEIEGKKSYAE
Ga0209536_1003033781	3300027917	Marine Sediment	GILRRFQAFFYASAFSQLDGFAVPAPAQVTQAVRQLIWMRYG
Ga0265593_10620211	3300028178	Saline Water	QSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRLSSME
Ga0268283_11246512	3300028283	Saline Water	QNRLAKTAQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVSRLS
(restricted) Ga0247844_13333511	3300028571	Freshwater	AQQSVHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVRWLSQ
Ga0302159_100662421	3300028646	Fen	PTLGSLARFQAFFHAFSFSQSDGVPPPAPARVTQTVGTPLAK
Ga0272412_11562881	3300028647	Activated Sludge	QQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGKNLR
Ga0268298_101218541	3300028804	Activated Sludge	VKNNAAQQSVHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTV
Ga0268298_103160583	3300028804	Activated Sludge	LGILRKPQAVSHAFSFFWLDGFAVPAPAQVTQTVRRLSSRVL
Ga0310376_10355641	3300028916	Anaerobic Enrichment Culture	AQQSVHPTLGILARFQAFFYTSAFSQSDGVPPPAPARVTQTVSPLFA
(restricted) Ga0247842_106651372	3300029268	Freshwater	VHPTLGILARFQAFFYALSFSQSDGIPPPAPARVTQTVGWLSKNINKGLFDE
Ga0302293_102796582	3300029981	Fen	TPMRININAAEQSVHPTLGILARFQAFFYALSFSQSDGVPPPAPARVTQTVGRLS
Ga0311348_103525173	3300030019	Fen	LFKPAAQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGQSNQ
Ga0311348_106419882	3300030019	Fen	LGILARFQAFFYASAFFQLDGVPPPAPARVTQTVERTPVLIAN
Ga0302285_102789091	3300030685	Fen	LARFQAFFYTSAFFQSDGVPPPAPARVTQTVGQFLAKQ
Ga0311335_108004941	3300030838	Fen	QNCAQQSVHPTLGILCKSQAVFYASAFFQLDGVLPPNPARVTQTVETVE
Ga0302323_1004827463	3300031232	Fen	QSVHPTLGILRHFQAVSYALSFFKSDGVPPSAPARVTQTVGWQFKSNQVPK
Ga0315556_10738461	3300031256	Salt Marsh Sediment	MIKTAQQSVHPTLGILARFQAFFHASAFSQSDGVPPPAPARVTQTVGRTAE
Ga0302321_1000463471	3300031726	Fen	QQSVHPTLGILARFQAFFYASSFFQSDGVPPPAPARVTQTVSPRVYKRITNK
Ga0302321_1024571732	3300031726	Fen	AAQQSVHPTLGILARFQAFFYASAFFQSDGFAVPAPARVTQTVRRFLVN
Ga0302321_1027438681	3300031726	Fen	QQSVHWTLGILPHFQAFFYASAFSQSDGVPPPAPAPVTQTVSPLQQ
Ga0302322_1008189791	3300031902	Fen	HPTLGILARFQAVFYASAFSRSDGVPPPAPARVTQTVGTPLAK
Ga0315268_10000066110	3300032173	Sediment	MMNLSSEAQQSVHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVGR
Ga0316608_10442501	3300033420	Microbial Mat	WQKASQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGLPLMKYL
Ga0316608_10742321	3300033420	Microbial Mat	LGILARFQAFFYALSFSQSDGGTPSNPARVTQTFSPPLA
Ga0316608_10746243	3300033420	Microbial Mat	LGILARFQAFFYALSFFQSDGVPPPAPARVTQTVRQIFGEIDL
Ga0316608_10966973	3300033420	Microbial Mat	PTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLA
Ga0316611_10204071	3300033446	Microbial Mat	PTLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVGTPLAKLVKSKRD
Ga0316611_10623992	3300033446	Microbial Mat	TLGILARFQAFFYALSFSQSDGVPPPAPARVTQTVVPLL
Ga0316611_10631873	3300033446	Microbial Mat	VHPTLGILARFQAFFYASAFFQSDGVPPPAPARVTQAVGHFLAE
Ga0316611_10673143	3300033446	Microbial Mat	LGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLAQPK
Ga0316611_10853731	3300033446	Microbial Mat	LGILARFQAFFYALSFSQSDGVPPPDPARVTQTVGQFLAKHH
Ga0316611_10865861	3300033446	Microbial Mat	GILARFQAFFYASAFFQSDGVPPPAPARVTQTVSP
Ga0316611_11115542	3300033446	Microbial Mat	VHPTLGILARFQAFFYASTFSQSDGVPPPTPARVTQTVRQIFGEIDL
Ga0316621_107757252	3300033488	Soil	KTAQQSVHPTLGIRRHFQAVSYASAFFQSDGVPPPAPARVTPTVGRTNAFA
Ga0316621_113205681	3300033488	Soil	AAQQSVHPTLVILARFQAFFYASAFSQADSVPPPAPAQVTQTVGQPPTQILN
Ga0316612_10918621	3300033494	Microbial Mat	QSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGQLLAK
Ga0316610_10240561	3300033498	Microbial Mat	LGILARFQAFFYALAFFQSDGVPPPAPARVTQTVRPPLAKLVFYNK
Ga0316610_10323571	3300033498	Microbial Mat	VHPTLGILARFQAFFYASAFPQSDGVPPPDPARVTQTV
Ga0316610_10508431	3300033498	Microbial Mat	LARFQAFFYALSFFQLDGVPPPAPARVTQTVRQIFGEIDL
Ga0316610_10749951	3300033498	Microbial Mat	TLGILARFQAFFYASAFFQSDGVPPPAPARVTQTVSP
Ga0316610_10752523	3300033498	Microbial Mat	VHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLA
Ga0316610_11149061	3300033498	Microbial Mat	LARFQAFFYALAFFQSDGVPPPDPARVTQTVSPPLAKGGIK
Ga0316616_1014716781	3300033521	Soil	LGILARFQAFFYASAFFQSDGVPPPAPARVTQTVSRLSKIEMK
Ga0370502_0059669_282_449	3300034156	Untreated Peat Soil	MQNAAQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGWLLAKLGK
Ga0370499_0120787_510_665	3300034194	Untreated Peat Soil	MKEYAAQHSVHPTLGILARFQAFFYASAFFQFDGVPPPAPARVTQTVGQFM