Metagenome Family F084779

Overview

Basic Information

• Family ID: F084779
• Family Type: Metagenome
• Number of Sequences: 112
• Average Sequence Length: 47 residues
• Representative Sequence: FGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF
• Number of Associated Samples: 97
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 95.54 %
• % of genes from short scaffolds (< 2000 bps): 87.50 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (83.929 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (7.143 % of family members)
• Environment Ontology (ENVO): Unclassified (38.393 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (49.107 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 54.17%
  β-sheet: 0.00%
  Coil/Unstructured: 45.83%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01717	Meth_synt_2	5.36
PF00571	CBS	3.57
PF00230	MIP	3.57
PF10503	Esterase_PHB	3.57
PF13231	PMT_2	3.57
PF08448	PAS_4	2.68
PF02776	TPP_enzyme_N	2.68
PF05649	Peptidase_M13_N	2.68
PF00254	FKBP_C	2.68
PF13472	Lipase_GDSL_2	1.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	5.36
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	3.57
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	2.68
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.79
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.89
COG1074	3’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.89
COG2225	Malate synthase	Energy production and conversion [C]	0.89
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.89
COG3938	Proline racemase/hydroxyproline epimerase	Amino acid transport and metabolism [E]	0.89
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.93 %
Unclassified	root	N/A	16.07 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.93 %
Unclassified	root	N/A	16.07 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.93 %
Unclassified	root	N/A	16.07 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Unclassified	root	N/A	16.07 %

Level 5

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.79 %
Unclassified	root	N/A	16.07 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	34.82 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	3.57 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Unclassified	root	N/A	16.07 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.89 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.89 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	3.57 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.79 %
Unclassified	root	N/A	16.07 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	3.57 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	3.57 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.89 %
Unclassified	root	N/A	16.07 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Labilitrichaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae	0.89 %
Unclassified	root	N/A	16.07 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	3.57 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Labilithrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix	0.89 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	3.57 %
Unclassified	root	N/A	16.07 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	34.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Labilithrix luteola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix → Labilithrix luteola	0.89 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	3.57 %
Unclassified	root	N/A	16.07 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000891|JGI10214J12806_12337790	All Organisms → cellular organisms → Bacteria → Acidobacteria	527
3300000955|JGI1027J12803_107641822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1454
3300000955|JGI1027J12803_107852645	All Organisms → cellular organisms → Bacteria → Acidobacteria	1200
3300000956|JGI10216J12902_115561995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774
3300004114|Ga0062593_103175367	All Organisms → cellular organisms → Bacteria → Acidobacteria	526
3300004157|Ga0062590_100558802	All Organisms → cellular organisms → Bacteria	993
3300004157|Ga0062590_102164845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	581
3300004463|Ga0063356_100141875	All Organisms → cellular organisms → Bacteria	2717
3300004463|Ga0063356_100372623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1819
3300004463|Ga0063356_102935111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.93%
Host-Associated	Host-Associated	41.07%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.04%
Plants	Host-Associated → Plants	41.07%
Terrestrial	Environmental → Terrestrial	50.89%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Freshwater	Environmental → Aquatic → Freshwater	3.57%
Peat	Environmental → Terrestrial → Peat	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.68%
Roots	Host-Associated → Plants → Roots	1.79%
Sediment	Environmental → Aquatic → Sediment	4.46%
Soil	Environmental → Terrestrial → Soil	48.21%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.93%
Loam	Environmental → Terrestrial → Soil → Loam	9.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.79%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_123377902	3300000891	Soil	FGGAHWSDFGRARLGVVISLEQEYQTANSDLLSRRLLAQTHIEF*
JGI1027J12803_1076418223	3300000955	Soil	IFGGAHWNQWGRGRLGLVVTMEQLYRTSNSQLLERRLLAQTQIEF*
JGI1027J12803_1078526454	3300000955	Soil	SQWGRGRLGVVVTLEQVLRAVNSELLERRLLAQTQIEF*
JGI10216J12902_1155619952	3300000956	Soil	YILGGAHWSQFGRGRVGLVVTWEQLFRVVNSDRLEHRLLAQTHVEF*
Ga0062593_1031753671	3300004114	Soil	RRRYSFGGAHWSQWGRGRLGVVVTLEQTFRSTNSELLDRRLLAQTQVEF*
Ga0062590_1005588021	3300004157	Soil	DSQRRYVFGGAHWSQVGRGRLGVVVTLEQSFQTSNSQLLGRRLLGQTPIKF*
Ga0062590_1021648452	3300004157	Soil	RRYMFGGAHWSQWGRGRLGVVASLEQEFRSVNSELLDRRLLLQTHVEF*
Ga0063356_1001418751	3300004463	Arabidopsis Thaliana Rhizosphere	RWSEVGRGRLGVVITMQQEYRSAGSQLLERRLLAQTHIEF*
Ga0063356_1003726231	3300004463	Arabidopsis Thaliana Rhizosphere	IFGGAHWSQVGRGRLGVVVSLEQTTRNAQLLGRRLLAQTHIEF*
Ga0063356_1029351112	3300004463	Arabidopsis Thaliana Rhizosphere	RRLIFGGAHWSQVGRGRLGVVVSLEQTTRDSQLLGRRLLAQTHVEF*
Ga0062591_1002046893	3300004643	Soil	PDGSNDSDSQRRLLIGGAHWSQISRARLGVVVSLEQTHQTANSQLLSRRLLAQTHIEF*
Ga0062381_100048392	3300004808	Wetland Sediment	MGGAHWSQWGRGRVGVVVTLEQLYRVVNSDRLERRLLAQTHVEF*
Ga0065712_105398501	3300005290	Miscanthus Rhizosphere	RRYMFGGAHWSQWGRGKLGVVISLEQLYRTANSQLEERRLLAQTHIEF*
Ga0065715_108309802	3300005293	Miscanthus Rhizosphere	AHWSQWGRGRLGVVVTLEQTFRSTNSELLDRRLLAQTQVEF*
Ga0065707_110452842	3300005295	Switchgrass Rhizosphere	WSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTLIEF*
Ga0070670_1000118731	3300005331	Switchgrass Rhizosphere	DGSNGTDSQRRYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0066388_1061180672	3300005332	Tropical Forest Soil	GAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0066388_1077494142	3300005332	Tropical Forest Soil	DSQRRLMFGGARWSQVGRGRLGVVISLEQTFRMSDSALLDRRLLAQTHVEF*
Ga0068868_1010825391	3300005338	Miscanthus Rhizosphere	NGTDSQRRYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTLIEF*
Ga0070691_103583192	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LIVGGAHWSRISRARLGVVVSLEQTHQTSNSQLLDRRLLAQTHIEF*
Ga0070691_110080621	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GTDSQRGYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0070669_1006701243	3300005353	Switchgrass Rhizosphere	SQRRYLFGGAHWSQVGRGRLGVVVTLEQSFQPSNDQLLGRRLLVQTQIQF*
Ga0070694_1013620542	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YIFGGAHWTQWARGRLGVVVTLEQTFRTVNRQLLQRRVLAQTHVEF*
Ga0073909_102882221	3300005526	Surface Soil	SKLSTGRLGVVISLEQTFQGEVSQLTGRRLLVQTDIEF*
Ga0070684_1009071142	3300005535	Corn Rhizosphere	FGGAHWSQWGRGRLGVVASLEQEFRSVNSELLDRRLLLQTHVEF*
Ga0068854_1013087902	3300005578	Corn Rhizosphere	GRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0068864_1003179992	3300005618	Switchgrass Rhizosphere	QRRRTVFGGAHWSDFGRARLGVVISLEQEYQTANSDLLSRRLLAQTHIEF*
Ga0068862_1000564741	3300005844	Switchgrass Rhizosphere	GSNDSDSQRRLLIGGAHWSQISRARLGVVVSLEQTHQTANSQLLSRRLLAQTHIEF*
Ga0070715_104452781	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GVTGWAGVGGVDFIQPDTSNEGQAQHRYIFGGAHWRQVGRGRLGIVVTMEQVFQAATSQLTSRRLLAQTHVEF*
Ga0068871_1000956671	3300006358	Miscanthus Rhizosphere	QRGYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0075428_10000653111	3300006844	Populus Rhizosphere	SQVGRGRLGVVVSLEQTTRNAQLLGRRLLAQTHIEF*
Ga0075421_1000288336	3300006845	Populus Rhizosphere	VGRGRLGVVVSLEQTTRNAQLLGRRLLAQTHIEF*
Ga0075430_1000401164	3300006846	Populus Rhizosphere	RRITFGGAHWSELGRGRLGVVISLQQEYRSAGSQLLERRLLAQTHIEF*
Ga0075430_1005869071	3300006846	Populus Rhizosphere	ANDSDSRRRYIFGGAHWSQVGRGRLGVVVTLEQIFRTVNSQLLERRLLAQTHVEF*
Ga0075431_1005443851	3300006847	Populus Rhizosphere	AHWSQVGRGRLGVVVTLEQEYQTANSQLLARRLLAQTHIEF*
Ga0079215_102238281	3300006894	Agricultural Soil	RLLFGGAHWNEFGRSKIGVVISLDQEYQTSNSQLLSRRLLAQTHIEF*
Ga0075419_101663162	3300006969	Populus Rhizosphere	DGDTRRRMVFGGAHWSEVGRGRLGVVISLDQEYQTSNSQLLSRRLLAQTHVEF*
Ga0066710_1048635601	3300009012	Grasslands Soil	DVSNEGAAQHRYVFGGAHWRQVGRGRLGIVVTMEQVFQASTSQLTSRRLLAQTHVEF
Ga0105243_116853541	3300009148	Miscanthus Rhizosphere	MVFGGAHWSDFGRGKLGVVISLDQEYQTANSQLLSRRLLAQTHVEF*
Ga0105100_105522572	3300009166	Freshwater Sediment	YVFGGAHWSQVGRGRLGVVVTLEQIYQTVNSQLLDRRLLAQTHVEF*
Ga0105242_110283952	3300009176	Miscanthus Rhizosphere	FGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0105248_106343221	3300009177	Switchgrass Rhizosphere	NGTDSQRGYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF*
Ga0105248_123405232	3300009177	Switchgrass Rhizosphere	MFGGAHWSQWGRGRLGVVVSLEQEFRTTNSELLDRRLLAQTHVEF*
Ga0126312_109746552	3300010041	Serpentine Soil	DFGRAKLGVVISLDQEYQTANSQLLSRRLLAQTHIEF*
Ga0126384_124017662	3300010046	Tropical Forest Soil	GGAHWSQWGRGKLGVVISLEQLYRTVNSQLEERRLLAQTHIEF*
Ga0126370_111590801	3300010358	Tropical Forest Soil	IFGGAHWRQIGTGRLGIVVTMEQVFQAATSQLTERRLLAQTHVEF*
Ga0126376_131928682	3300010359	Tropical Forest Soil	GGVDFIEPDISNDGLAQHRYIFGGANWRQIGTGRLGIVVTMEQVFQAATSQLTERRLLAQTHVEF*
Ga0126378_110809481	3300010361	Tropical Forest Soil	NDGLAQHRYIFGGAHWRQIGTGRLGIVVTMEQVFQAATSQLTERRLLAQTHVEF*
Ga0126377_129479291	3300010362	Tropical Forest Soil	IFGGAHWRQIGSGRLGIVVTMEQVYQASNSLLVSRRLLGQTHVEF*
Ga0105239_110280511	3300010375	Corn Rhizosphere	SQRRYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTLIEF*
Ga0126383_111734952	3300010398	Tropical Forest Soil	GGAHWRQIGTGRLGIVVTMEQVFQAATSQLTERRLLAQTHVEF*
Ga0126383_119813821	3300010398	Tropical Forest Soil	PDTSNDGLAQHRYVFGGAHWRQIGRGRLGIVVTMEQIFQASTSLLTERRLNVQTHVEF*
Ga0134122_108395653	3300010400	Terrestrial Soil	HWSQWGRGRLGLVVTLEQTFRSTNSELLDRRLLAQTQVEF*
Ga0134123_105091772	3300010403	Terrestrial Soil	AHWSQVGRGRLGVVISLDQSYRVINSQLTERRLLAQTHIEF*
Ga0105246_115302532	3300011119	Miscanthus Rhizosphere	RRYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTLIEF*
Ga0137432_12728881	3300011439	Soil	NAGDQRRRYIVGGAHWSQVGRGRLGVVITLEQEYQTANSQLLSRRLLAQTHIEF*
Ga0137452_10828263	3300011441	Soil	IFGGAHWSEVGRGRLGVVVSLQQESANSQLFSRRLLAQTHIEF*
Ga0137368_104798691	3300012358	Vadose Zone Soil	FGGAHWSQVGRGRLGVVVTLEQMFRTVNSQLLERRLLAQTHVEF*
Ga0150984_1157013701	3300012469	Avena Fatua Rhizosphere	HWSQWGRGRLGVVVTLEQLFRTVNSERLESRLLAQTHVEF*
Ga0150984_1191275681	3300012469	Avena Fatua Rhizosphere	SNGSDTRRRYIFGGAHWSQWGRGRLGVVVTMEQVFQTSNSQLLERRLLAQTHVEF*
Ga0157284_100259131	3300012893	Soil	GAHWSQVGRGRLGVVVTLEQSFQTSNSQLLGRRLLGQTQIKF*
Ga0157286_101722951	3300012908	Soil	RTVFGGAHWSDFGRARLGVVISLEQEYQTANSDLLSRRLLAQTHIEF*
Ga0137395_110221393	3300012917	Vadose Zone Soil	FGGAHWRQVGRGRLGIVVTMEQVFQAVNSELVERRLRVQTHVEF*
Ga0164302_100109375	3300012961	Soil	SERRYVFGGAHWSQWGRGKLGVVVSLEQLYRTANSQLEERRLLAQTHIEF*
Ga0157372_107118931	3300013307	Corn Rhizosphere	TDSQRRYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTLIEF*
Ga0157375_116928052	3300013308	Miscanthus Rhizosphere	YMFGGAHWSQWGRGRLGVVVSLEQEFRTTNSELLDRRLLAQTHVEF*
Ga0075314_11749991	3300014265	Natural And Restored Wetlands	RLIFAGAHWSQVGRGRLGVVITLEQVSQTANSQLLERRLLAQTHVEF*
Ga0163163_110958521	3300014325	Switchgrass Rhizosphere	QRRLIVGGAHWSRISRARLGVVVSLEQTHQTSNSQLLDRRLLAQTHIEF*
Ga0157380_124187572	3300014326	Switchgrass Rhizosphere	RARLGVVVSLEQTHQTANSQLLSRRLLAQTHIEF*
Ga0157377_102604832	3300014745	Miscanthus Rhizosphere	WSDFGRARLGVVISLEQEYQTANSDLLSRRLLAQTHIEF*
Ga0180083_11152541	3300014875	Soil	WSEVGRGRLGVVVSLQQESANSQLFSRRLLAQTHIEF*
Ga0132256_1029523071	3300015372	Arabidopsis Rhizosphere	RYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHVEF*
Ga0132257_1008167651	3300015373	Arabidopsis Rhizosphere	RYIFGGAHWSQWGRGRLGVVVTMEQVFQTSNGQLLERRVLAQTHVEF*
Ga0182032_120250762	3300016357	Soil	FGGANWRQVGRGRLGIVVTLESIFQTSTAQLVSRRLLAQTHVEF
Ga0187821_101569981	3300017936	Freshwater Sediment	VDLITPDTSDESLKQRRYVFGGAHWRQVGRGRLGIVVTLESIFSSIDSQLLARRLLAQTHVEF
Ga0184605_102346521	3300018027	Groundwater Sediment	DSDSRRRYIFGGAHWSQVGRGRLGVVVTLEQLFRAINSQLLERRLLAQTHVEF
Ga0184625_104765051	3300018081	Groundwater Sediment	SDSQRRLIVGGAHWSRISRARLGVVVSLEQTHQTSNSQLLDRRLLAQTHIEF
Ga0190274_105145052	3300018476	Soil	VGGAHWSRISRARLGVVVSLEQTHQTSNSQLLGRRLLAQTHIEF
Ga0190274_128454871	3300018476	Soil	SRISRARLGVVVSLEQTHQTSNSQLLDRRLLAQTHIEF
Ga0247755_11398071	3300023070	Plant Litter	SQRRYVFGGAHWSQVGRGRLGVVVTLEQSFQTSNSQLLGRRLLGQTQIKF
Ga0209640_100625501	3300025324	Soil	DSRSRYIFGGAHWSQVGRGRLGVVVTLEQEFQAVNSQLLERRLLAQTHIEF
Ga0207653_102209991	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	DSQRGYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF
Ga0207685_101685843	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	GVTGWAGVGGVDFIQPDTSNEGQAQHRYIFGGAHWRQVGRGRLGIVVTMEQVFQAATSQLTSRRLLAQTHVEF
Ga0207662_105283951	3300025918	Switchgrass Rhizosphere	YMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF
Ga0207659_102401393	3300025926	Miscanthus Rhizosphere	QRRRLVFGGAHWSDVGRGKLGVVISLDQEYQTANSHLLSRRLLAQTHVEF
Ga0207659_106679851	3300025926	Miscanthus Rhizosphere	TVFGGAHWSDFGRARLGVVISLEQEYQTANSDLLSRRLLAQTHIEF
Ga0207644_104442012	3300025931	Switchgrass Rhizosphere	AHWSRISRARLGVVVSLEQTHQTSNSQLLDRRLLAQTHIEF
Ga0207690_104103344	3300025932	Corn Rhizosphere	GSNDSDSQRRLLIGGAHWSQISRARLGVVVSLEQTHQTANSQLLSRRLLAQTHIEF
Ga0207711_114269282	3300025941	Switchgrass Rhizosphere	SNGTDSQRGYMFGGAHWSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF
Ga0207640_102072001	3300025981	Corn Rhizosphere	WGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF
Ga0207640_108801541	3300025981	Corn Rhizosphere	AHWSDFGRARLGVVISLEQEYQTANSDLLSRRLLAQTHIEF
Ga0207658_102271213	3300025986	Switchgrass Rhizosphere	ISRARLGVVVSLEQTHQTSNSQLLDRRLLAQTHIEF
Ga0207676_120197332	3300026095	Switchgrass Rhizosphere	QWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTLIEF
Ga0209074_102834921	3300027787	Agricultural Soil	NGSNGNDSQRRYIFGGAHWNQWGRGRLGLVVTLEQLYRTVNSQLLQRRLLAQTQIEF
Ga0209797_100039108	3300027831	Wetland Sediment	MGGAHWSQWGRGRVGVVVTLEQLYRVVNSDRLERRLLAQTHVEF
Ga0310886_100276791	3300031562	Soil	WTEAGTGRFGVVVSLVQEYGSASSQLLSRRLQAQTLIEF
Ga0307469_124842592	3300031720	Hardwood Forest Soil	YVFGGAHWRQVGRGRLGIVVTMEQVFQATTSQLTSRRLLAQTHVEF
Ga0307468_1014886082	3300031740	Hardwood Forest Soil	RRYLFGGAHGSQWGRGRLGVVVSLEQLYRTANSQLLERRLLAQTHIEF
Ga0310907_100068661	3300031847	Soil	DNDTRRRYLFGGAHWTEAGTGRFGVVVSLVQEYGSASSQLLSRRLQAQTLIEF
Ga0310907_100360854	3300031847	Soil	GRSKIGVVISLDQEYQTANSQLLSRRLLAQTHIEF
Ga0307412_108549692	3300031911	Rhizosphere	GGAHWSQVGRGRLGIIVSLEQVNGGYGGGGSQLLERRLLGQTHVEF
Ga0307412_114384461	3300031911	Rhizosphere	EGNSRRRLIFGGAHWSEAGRGRLGVVVSLQQESENSQLQSRRLLAQTHIEF
Ga0310885_106136041	3300031943	Soil	QVGRGRLGVVITVEQEYQTANSQLLSRRLLAQTHIEF
Ga0310884_103170821	3300031944	Soil	SQVGRGRLGVVISLDQSYRVINSQLTERRLLAQTHIEF
Ga0326597_1001225617	3300031965	Soil	MGGAHWSQWGRGRVGVVVTYEQLYRVANSDRLESRLLAQTHVEF
Ga0307416_1022931952	3300032002	Rhizosphere	GGAHWSQVGRGRLGIVVSLEQVNGGYGGGGSQLLERRLLGQTHVEF
Ga0307411_111139242	3300032005	Rhizosphere	RGTGQVGAVVTLEQAVRAADSQLVERRLLAQTHIEF
Ga0315910_102013222	3300032144	Soil	HWSQVGRGRLGVVVSLEQISQTVNSQLLERRLLVQTHVEF
Ga0315912_101787944	3300032157	Soil	NDGDAKRRVIFGGAHWSRFSLGRMGIVVTLEQVYQTANSQLLERRLLAQTHVEF
Ga0307471_1016246991	3300032180	Hardwood Forest Soil	AHWSQVGRGKLGIVVTLEQTFQTANSQLLERRLLGQTHIEF
Ga0326723_0314451_1_141	3300034090	Peat Soil	YTFGGAHWSQVGRGRLGVVVTLEQLYRTVNSQLLERRLLAQTHVEF
Ga0364943_0352542_3_125	3300034354	Sediment	GAHWSEVGRGRLGVVVSLQQESANSQLFSRRLLAQTHIEF