Metagenome / Metatranscriptome Family F084689

Basic Information
Family ID	F084689
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	44 residues
Representative Sequence	MSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ
Number of Associated Samples	86
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.86 %
% of genes near scaffold ends (potentially truncated)	42.86 %
% of genes from short scaffolds (< 2000 bps)	79.46 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (80.357 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.286 % of family members)
Environment Ontology (ENVO)	Unclassified (46.429 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.107 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13407	Peripla_BP_4	3.57
PF00589	Phage_integrase	1.79
PF13671	AAA_33	1.79
PF00313	CSD	1.79
PF07883	Cupin_2	1.79
PF13505	OMP_b-brl	1.79
PF00817	IMS	0.89
PF11695	DUF3291	0.89
PF01425	Amidase	0.89
PF06803	DUF1232	0.89
PF01068	DNA_ligase_A_M	0.89
PF16518	GrlR	0.89
PF02738	MoCoBD_1	0.89
PF13683	rve_3	0.89
PF13304	AAA_21	0.89
PF04909	Amidohydro_2	0.89
PF01609	DDE_Tnp_1	0.89
PF12327	FtsZ_C	0.89
PF13545	HTH_Crp_2	0.89
PF01042	Ribonuc_L-PSP	0.89
PF12071	DUF3551	0.89
PF13561	adh_short_C2	0.89
PF13458	Peripla_BP_6	0.89
PF00497	SBP_bac_3	0.89
PF12847	Methyltransf_18	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.89
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.89
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.89
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.89
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.89
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.89
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.89
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.89
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.89
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.36 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.36 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.36 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.11 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	69.64 %
Unclassified	root	N/A	19.64 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	52.68 %
Unclassified	root	N/A	19.64 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.79 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	49.11 %
Unclassified	root	N/A	19.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.79 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1.79 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	41.96 %
Unclassified	root	N/A	19.64 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.79 %
Muriiphilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.64 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.57 %
Muriiphilus fusiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	1.79 %
Bradyrhizobium cytisi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cytisi	1.79 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Bradyrhizobium barranii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii	0.89 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.89 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.89 %
Bradyrhizobium algeriense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense	0.89 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.89 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.64 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1.79 %
Bradyrhizobium sp. dw_411	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	1.79 %
Muriiphilus fusiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	1.79 %
Bradyrhizobium cytisi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cytisi	1.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Bradyrhizobium barranii subsp. barranii	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	0.89 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	0.89 %
Bradyrhizobium sp. WSM471	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM471	0.89 %
Rhodopseudomonas palustris BisB18	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisB18	0.89 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.89 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.89 %
Bradyrhizobium algeriense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense	0.89 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10736913	Not Available	567	Open in IMG/M
3300003505\|JGIcombinedJ51221_10327835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	623	Open in IMG/M
3300005336\|Ga0070680_100322786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1311	Open in IMG/M
3300005471\|Ga0070698_100921367	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300005937\|Ga0081455_10020046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6311	Open in IMG/M
3300005952\|Ga0080026_10055681	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300006028\|Ga0070717_10153077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1996	Open in IMG/M
3300006050\|Ga0075028_100054117	All Organisms → cellular organisms → Bacteria → Proteobacteria	1940	Open in IMG/M
3300006172\|Ga0075018_10046392	All Organisms → cellular organisms → Bacteria → Proteobacteria	1793	Open in IMG/M
3300006172\|Ga0075018_10301193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300006175\|Ga0070712_101438876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	602	Open in IMG/M
3300006358\|Ga0068871_100043838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3595	Open in IMG/M
3300006893\|Ga0073928_10279511	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300007255\|Ga0099791_10433779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	634	Open in IMG/M
3300007255\|Ga0099791_10584447	Not Available	545	Open in IMG/M
3300007258\|Ga0099793_10115102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1253	Open in IMG/M
3300007265\|Ga0099794_10085449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1561	Open in IMG/M
3300007265\|Ga0099794_10242351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300007265\|Ga0099794_10637192	Not Available	566	Open in IMG/M
3300007265\|Ga0099794_10813697	Not Available	500	Open in IMG/M
3300009088\|Ga0099830_10547746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	946	Open in IMG/M
3300009088\|Ga0099830_10897134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	733	Open in IMG/M
3300009143\|Ga0099792_10701121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	655	Open in IMG/M
3300010043\|Ga0126380_11212043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	651	Open in IMG/M
3300010159\|Ga0099796_10227276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	767	Open in IMG/M
3300010159\|Ga0099796_10316251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	665	Open in IMG/M
3300010360\|Ga0126372_11036093	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300010360\|Ga0126372_11674750	Not Available	677	Open in IMG/M
3300010396\|Ga0134126_10552331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	1322	Open in IMG/M
3300011269\|Ga0137392_10160265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	1821	Open in IMG/M
3300011269\|Ga0137392_10919081	Not Available	720	Open in IMG/M
3300011270\|Ga0137391_10261272	All Organisms → cellular organisms → Bacteria → Proteobacteria	1499	Open in IMG/M
3300011271\|Ga0137393_10321470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1319	Open in IMG/M
3300012096\|Ga0137389_10587331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	957	Open in IMG/M
3300012096\|Ga0137389_10869632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris → Rhodopseudomonas palustris BisB18	774	Open in IMG/M
3300012096\|Ga0137389_10889644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	764	Open in IMG/M
3300012203\|Ga0137399_10047898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3084	Open in IMG/M
3300012203\|Ga0137399_11162588	Not Available	650	Open in IMG/M
3300012211\|Ga0137377_10050994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	3823	Open in IMG/M
3300012363\|Ga0137390_10100080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2866	Open in IMG/M
3300012683\|Ga0137398_10027052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3199	Open in IMG/M
3300012683\|Ga0137398_10292869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium algeriense	1093	Open in IMG/M
3300012685\|Ga0137397_10215295	Not Available	1430	Open in IMG/M
3300012685\|Ga0137397_10440244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300012929\|Ga0137404_10155364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1906	Open in IMG/M
3300012929\|Ga0137404_10854888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300012944\|Ga0137410_10253694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1379	Open in IMG/M
3300015053\|Ga0137405_1001880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1089	Open in IMG/M
3300015054\|Ga0137420_1439015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6670	Open in IMG/M
3300015241\|Ga0137418_10083032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2903	Open in IMG/M
3300018028\|Ga0184608_10077401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	1358	Open in IMG/M
3300018051\|Ga0184620_10251995	Not Available	592	Open in IMG/M
3300018053\|Ga0184626_10400783	Not Available	548	Open in IMG/M
3300018066\|Ga0184617_1115306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	764	Open in IMG/M
3300018078\|Ga0184612_10214062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	999	Open in IMG/M
3300018429\|Ga0190272_11063337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	780	Open in IMG/M
3300019789\|Ga0137408_1293147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1620	Open in IMG/M
3300019789\|Ga0137408_1370759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5592	Open in IMG/M
3300019789\|Ga0137408_1415643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7268	Open in IMG/M
3300019789\|Ga0137408_1481688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3170	Open in IMG/M
3300019874\|Ga0193744_1001201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4733	Open in IMG/M
3300019874\|Ga0193744_1013683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1495	Open in IMG/M
3300019881\|Ga0193707_1159967	Not Available	619	Open in IMG/M
3300019881\|Ga0193707_1163790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	607	Open in IMG/M
3300019881\|Ga0193707_1181295	Not Available	556	Open in IMG/M
3300019882\|Ga0193713_1008174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3212	Open in IMG/M
3300019883\|Ga0193725_1005886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3538	Open in IMG/M
3300019886\|Ga0193727_1006484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4706	Open in IMG/M
3300019886\|Ga0193727_1008002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4182	Open in IMG/M
3300019886\|Ga0193727_1180161	Not Available	544	Open in IMG/M
3300020002\|Ga0193730_1075240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	958	Open in IMG/M
3300020004\|Ga0193755_1030653	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300020004\|Ga0193755_1205095	Not Available	559	Open in IMG/M
3300020006\|Ga0193735_1103947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	789	Open in IMG/M
3300020012\|Ga0193732_1022744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1086	Open in IMG/M
3300020170\|Ga0179594_10150557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	860	Open in IMG/M
3300020199\|Ga0179592_10001059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11184	Open in IMG/M
3300020579\|Ga0210407_10038364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3565	Open in IMG/M
3300021168\|Ga0210406_10442313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1036	Open in IMG/M
3300021403\|Ga0210397_10412122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1012	Open in IMG/M
3300021433\|Ga0210391_10743274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	768	Open in IMG/M
3300021968\|Ga0193698_1051680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	527	Open in IMG/M
3300024330\|Ga0137417_1155708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	991	Open in IMG/M
3300025915\|Ga0207693_10094778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2339	Open in IMG/M
3300025915\|Ga0207693_11058252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300025917\|Ga0207660_10037978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. dw_411	3359	Open in IMG/M
3300025928\|Ga0207700_10019253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4607	Open in IMG/M
3300026217\|Ga0209871_1016814	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300026291\|Ga0209890_10008718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4184	Open in IMG/M
3300026345\|Ga0257148_1003974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1010	Open in IMG/M
3300026489\|Ga0257160_1017479	All Organisms → cellular organisms → Bacteria → Proteobacteria	1103	Open in IMG/M
3300026551\|Ga0209648_10165052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1732	Open in IMG/M
3300027388\|Ga0208995_1039120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cytisi	834	Open in IMG/M
3300027546\|Ga0208984_1097361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cytisi	636	Open in IMG/M
3300027633\|Ga0208988_1037923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1239	Open in IMG/M
3300027663\|Ga0208990_1079253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	936	Open in IMG/M
3300027738\|Ga0208989_10210177	Not Available	642	Open in IMG/M
3300027875\|Ga0209283_10463019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	820	Open in IMG/M
3300027882\|Ga0209590_10356788	Not Available	942	Open in IMG/M
3300027903\|Ga0209488_10205154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1484	Open in IMG/M
3300027903\|Ga0209488_10573589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM471	821	Open in IMG/M
3300028819\|Ga0307296_10791781	Not Available	517	Open in IMG/M
3300028828\|Ga0307312_10036997	All Organisms → cellular organisms → Bacteria → Proteobacteria	2870	Open in IMG/M
3300028885\|Ga0307304_10460957	Not Available	579	Open in IMG/M
3300028906\|Ga0308309_10587089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	967	Open in IMG/M
3300030943\|Ga0311366_11408203	Not Available	598	Open in IMG/M
3300031128\|Ga0170823_15924250	Not Available	592	Open in IMG/M
3300031421\|Ga0308194_10368879	Not Available	516	Open in IMG/M
3300031446\|Ga0170820_11378812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	986	Open in IMG/M
3300031879\|Ga0306919_10771909	Not Available	739	Open in IMG/M
3300032180\|Ga0307471_100724167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1160	Open in IMG/M
3300033544\|Ga0316215_1004294	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.32%
Host-Associated	Host-Associated	2.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.29%
Aquatic	Environmental → Aquatic	8.04%
Plants	Host-Associated → Plants	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.39%
Sediment	Environmental → Aquatic → Sediment	7.14%
Roots	Host-Associated → Plants → Roots	1.79%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Peat	Environmental → Terrestrial → Peat	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.43%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	61.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.79%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021968	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c1	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033544	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084689

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_107369132	3300001593	Forest Soil	EPEGDEMIATSHGRRSWKDSPTAKAIAATISLLLIADLIAVLAFALLSMQ*
JGIcombinedJ51221_103278351	3300003505	Forest Soil	MTAASHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ*
Ga0070680_1003227861	3300005336	Corn Rhizosphere	MINTSRGGGSWKDSPRAKIIAGTISLLLIAGLIAMFAAIV*
Ga0070698_1009213673	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTATSHGRRSWKDSPKAKMIAATISLLSIAGLIAMLAVAILFAQ*
Ga0081455_100200468	3300005937	Tabebuia Heterophylla Rhizosphere	MTLATQHGRSRRSWKDSPKAKTIAAVITLLLIVCLVVLLANAFLSMS*
Ga0080026_100556813	3300005952	Permafrost Soil	SWKDSPKAKRIAVTIALLLIAGLIAMLAVAFLFTQ*
Ga0070717_101530772	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTATNHGRRSWKDSPKAKRIAATISLLLIAGLIAVLAIAFLFTQ*
Ga0075028_1000541175	3300006050	Watersheds	MIATSHERQSWKDNPKAKKIAATISLLLIAGLIAVLAFALLSMQ*
Ga0075018_100463923	3300006172	Watersheds	MIATSHERQSWKDNPKAKKIAATISLLLIAGLIAVLAFALLSMQRSSPSACSD*
Ga0075018_103011932	3300006172	Watersheds	MIATRYSRRSWKDNPKAKTIAATISLLLIAGLIAVLAFAFLSMQ*
Ga0070712_1014388762	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTATSRRSWKDNPKAKAIAATISLLLIAGLIAVLAFALLTLR*
Ga0068871_1000438383	3300006358	Miscanthus Rhizosphere	MINTSRGGGSWKDSPRAKIIAGTISLLLIAGLIAMLAAIV*
Ga0073928_102795111	3300006893	Iron-Sulfur Acid Spring	EMTAASHGRRSWKDGPKAKRIAATISLLLIAGLIAMLAVAFLFTQ*
Ga0099791_104337791	3300007255	Vadose Zone Soil	MVATSHGRRSWKDNPKAKTIAATVSLLLITGLIAVLAFALLSMQ*
Ga0099791_105844472	3300007255	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALIAVLVLAFCSMR*
Ga0099793_101151021	3300007258	Vadose Zone Soil	MTTTSHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ*
Ga0099794_100854496	3300007265	Vadose Zone Soil	MSATSHGRRSCKDSPAAKAIAATISSLLIAGFIAVLAFALLFMQ*
Ga0099794_102423511	3300007265	Vadose Zone Soil	MIATSHGRRSWKDNSKAKTLAATVSSLLIIGMIAVLAFA
Ga0099794_106371922	3300007265	Vadose Zone Soil	MIATSHGRRSWKDNSKAKTIAATVSSLLITGWIAVLAFALLSNAVK
Ga0099794_108136971	3300007265	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAAMVSLLLITGLIAVLVLAFCCRR*
Ga0099830_105477461	3300009088	Vadose Zone Soil	ATSHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ*
Ga0099830_108971341	3300009088	Vadose Zone Soil	SEEMTATSHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ*
Ga0099792_107011212	3300009143	Vadose Zone Soil	ATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSVQ*
Ga0126380_112120431	3300010043	Tropical Forest Soil	MNATSHGRHSWKDNPKAKAIAATISLLLIASLIALLAFAFLSAQ*
Ga0099796_102272761	3300010159	Vadose Zone Soil	TSQGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ*
Ga0099796_103162512	3300010159	Vadose Zone Soil	KGEEMSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSVQ*
Ga0126372_110360932	3300010360	Tropical Forest Soil	EEMTVTSRPCHGRRSWKDSPRAKTIARTISLLLGVGLIIVLVFAFHDAG*
Ga0126372_116747502	3300010360	Tropical Forest Soil	MTATSHGRHSWKDSPKAKAVAATISLLLIASLIAMLTFAFLFAQ*
Ga0134126_105523313	3300010396	Terrestrial Soil	MINTSRGGGSWKDSPRAKIIAGTISLLLIAGLIAM
Ga0137392_101602653	3300011269	Vadose Zone Soil	MIATSHGRRSWKDSPKAKRIAVTIVLLLIAGLIAMLAVAFLFTQ*
Ga0137392_109190811	3300011269	Vadose Zone Soil	AEGEEMIATSHGRRSWKDSPKAKAIAATVSLLLLAGLIAVLAFELLSMR*
Ga0137391_102612722	3300011270	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAGLIAVLAFALLSMQ*
Ga0137393_103214702	3300011271	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALIAVLVLALLKAKGK*
Ga0137389_105873311	3300012096	Vadose Zone Soil	RRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ*
Ga0137389_108696321	3300012096	Vadose Zone Soil	LATSHRRRSWKDSPTAKAIAATVSSLLIAALIAVLAFALLSIK*
Ga0137389_108896442	3300012096	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALIAVLVLALLKANGK*
Ga0137399_100478987	3300012203	Vadose Zone Soil	MIATSHGRRLWKDNPKAKTIAATVSSLLIAALIAVLVLAFCSMR*
Ga0137399_111625881	3300012203	Vadose Zone Soil	MIATSHGRRSWKDSPKAKRIAVTIALLLIAGLIAMLAVAFLFTQ*
Ga0137377_100509942	3300012211	Vadose Zone Soil	MIATSHGRRSWKDNPTAKTIAATVSSLLIAGLIAVLAFALLSMQ*
Ga0137390_101000801	3300012363	Vadose Zone Soil	MSATSHGRRSWKDSPTAKAMAATISLLFIAVLAFALLSMQ*
Ga0137398_100270525	3300012683	Vadose Zone Soil	MRATSQGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ*
Ga0137398_102928691	3300012683	Vadose Zone Soil	MSATSHGRRSCKDSPAAKAIAATISSLLIAGFIAVLAFALLF
Ga0137397_102152952	3300012685	Vadose Zone Soil	MSATSHRRSWKDNPKAKTIAATVSSLLIAGLIAVLAFALLSKQ*
Ga0137397_104402441	3300012685	Vadose Zone Soil	RSWKDNPKAKTIAATVSSLLIAALIAVLVLALLKAEGK*
Ga0137404_101553641	3300012929	Vadose Zone Soil	MLATSHGRRSWKDSPTAKAIAATISLLLIAGSIAVLAFSLLSMQ*
Ga0137404_108548883	3300012929	Vadose Zone Soil	MTTRNRSRQSWKDSPKAKTIAATISLLLIAGLIAGLAFALLSM
Ga0137410_102536943	3300012944	Vadose Zone Soil	GRRSWKDNPKAKTIAATVSSLLIAALIAVLVLALLKAEGK*
Ga0137405_10018801	3300015053	Vadose Zone Soil	SPQVMGADRSWKDNPKAKTIAATVSSLLIAALIAVLVLAFCSMR*
Ga0137420_14390156	3300015054	Vadose Zone Soil	MAADRAKDSPAAKAIAATISSLLIAGFIAVLAFALLFMQ*
Ga0137418_100830325	3300015241	Vadose Zone Soil	MSATSHGRQSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ*
Ga0184608_100774014	3300018028	Groundwater Sediment	LLPVGLLKGEEMSATSHGRRSWKDNPKAKAIAATISSLLIAALIAVLAFALLSMQ
Ga0184620_102519952	3300018051	Groundwater Sediment	MIATSHGRRSWKDNSKAKTIAATVSSLVIAALIAVLVLALLKANGK
Ga0184626_104007832	3300018053	Groundwater Sediment	MSATSHRRRSWKDNPKAKKIAATISLLLIAGLIAVLAFALLSKQ
Ga0184617_11153063	3300018066	Groundwater Sediment	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALIAVLVLALLKAKGK
Ga0184612_102140622	3300018078	Groundwater Sediment	MIATSHGRRSWKDNPKAKTIAATISLLLIAGLIALLAFALLSI
Ga0190272_110633371	3300018429	Soil	EMSATSHRRRSWKDDPKAKTIAATISLLLIAGLIAVLAFALLSMQ
Ga0137408_12931475	3300019789	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALIAVLV
Ga0137408_13707596	3300019789	Vadose Zone Soil	MRATSQGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ
Ga0137408_14156438	3300019789	Vadose Zone Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALIAVLVLAFCSMR
Ga0137408_14816887	3300019789	Vadose Zone Soil	MIATSHGRRLWKDNPKAKTIAATVSSLLIAALIAVLVLAF
Ga0193744_10012012	3300019874	Soil	MSATSHGRRSWKDNPKAKAIAATISSLLIAALIAVLAFALLSMQ
Ga0193744_10136833	3300019874	Soil	RRSWKDNPKAKTIAATVSSLVIAALIAVLVLALLKANGK
Ga0193707_11599672	3300019881	Soil	MSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVL
Ga0193707_11637901	3300019881	Soil	MIATSRGRRSWKDNPKAKTIAATVSSLLIAALIAVLVLALLKAKGK
Ga0193707_11812951	3300019881	Soil	MIATSHGRRSWKDNPKAKTIAATVSSLVIAALIAVLVLALLKANGK
Ga0193713_10081746	3300019882	Soil	MSATSHGRRSWKDNPKAKTIAATVSSLLIGGLIAVLAFALLSMQ
Ga0193725_10058868	3300019883	Soil	MSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALPSMQ
Ga0193727_10064842	3300019886	Soil	MSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLAFALLSMQ
Ga0193727_100800210	3300019886	Soil	MSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLVLAFALQ
Ga0193727_11801611	3300019886	Soil	GEGKEMSATSHRHRSWKDCPTAKAIAATVSSLLIAALIAVLVLAFYCRR
Ga0193730_10752403	3300020002	Soil	RRSWKDSLTAKAIAATISLLLIAGLIAVLAFALLSIR
Ga0193755_10306532	3300020004	Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIGGLIAVLAFALLSMQ
Ga0193755_12050953	3300020004	Soil	HGRRSWKDSPKAKRIAVTIALLLIGGLIALLAVAFLFTQ
Ga0193735_11039472	3300020006	Soil	MIATSHGRRSWKDSPKAKRIAVTIALLLIGGLIALLAVAFLFTQ
Ga0193732_10227442	3300020012	Soil	MIATSRGRRSWKDNPKAKTIAATVSSLVIAALIAVLVLALLKANGK
Ga0179594_101505572	3300020170	Vadose Zone Soil	MSATSHGRRSCKDSPAAKAIAATISSLLIAGFIAVLAFALLFMQ
Ga0179592_1000105911	3300020199	Vadose Zone Soil	MVATSHGRRSWKDNSQSETIAATVSLLLITGLIAVLAFALLSMQ
Ga0210407_100383643	3300020579	Soil	MIATSHSRRSWKDSPKAKMIAATASLLLIAGLIAILAFEFLSLR
Ga0210406_104423131	3300021168	Soil	MTATGHGRRYWKDNPKAKRIAAMISLLLIAALIAMLAVAFLFGQ
Ga0210397_104121222	3300021403	Soil	MTATSRRSWKDNPKAKAIAAAISLLLIAGLIAVLVFALLTLR
Ga0210391_107432741	3300021433	Soil	VESEEMTAASHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ
Ga0193698_10516801	3300021968	Soil	MIATSHGRRSWKDNPKAKTIAATVSSLVIAALIAVLVLALLKA
Ga0137417_11557081	3300024330	Vadose Zone Soil	MVATSHGRRSWKDNPKAKTIAATVSLLLITGLIAVLAFALLSMQ
Ga0207693_100947786	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTATSHGRRSWKDSPKAKTIAATISLLLIAGLIVVLTF
Ga0207693_110582522	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTATSRRSWKDNPKAKAIAATISLLLIAGLIAVLAFALLTLR
Ga0207660_100379784	3300025917	Corn Rhizosphere	MINTSRGGGSWKDSPRAKIIAGTISLLLIAGLIAMFAAIV
Ga0207700_100192536	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTATSHGRRSWKDSPKAKMIAATISLLSIAGLIAMLALAILFAQ
Ga0209871_10168142	3300026217	Permafrost Soil	SHRRRSWKDSPKAKRIAVTIALLLIAGLIAMLAVAFLFTQ
Ga0209890_100087189	3300026291	Soil	MIATSHRRRSWKDSPKAKRIAVTIALLLIAGLIAMLAVAFLFTQ
Ga0257148_10039742	3300026345	Soil	MIATSHGRRSWKDNPKAKTIAATVSLLLITGLIAVLAFALLSMQ
Ga0257160_10174793	3300026489	Soil	MIATSHGRRSWKDSPKAKRIAVTIALLLIAGLIAMLAVAFLFTQ
Ga0209648_101650521	3300026551	Grasslands Soil	ESEEMTATSHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ
Ga0208995_10391201	3300027388	Forest Soil	ARIESEEMTATSHGRRSWKDSPKAKRIAAPISLLLIAGLIAMLAVAFLFTQ
Ga0208984_10973611	3300027546	Forest Soil	HGRRSWKDSPKAKRIAAPISLLLIAGLIAMLAVAFLFTQ
Ga0208988_10379233	3300027633	Forest Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAGLIAVLAFALLSMQ
Ga0208990_10792531	3300027663	Forest Soil	MIATSHGRRSWKDNPKAKTIAATVSSLLIAALFAVLVLAFCSMR
Ga0208989_102101772	3300027738	Forest Soil	MIATSHGRRSWKDSPNAKGIAVTIALLLIAGLIAMLAVAFLFTQ
Ga0209283_104630192	3300027875	Vadose Zone Soil	MTATSHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ
Ga0209590_103567884	3300027882	Vadose Zone Soil	MSATSHGRRSWKDSPTAKAMAATISLLFIAVLAFALLS
Ga0209488_102051543	3300027903	Vadose Zone Soil	EMTATSHGRRSWKDSPKAKRIAAPISLLLIAGLIAMLAVAFLFTQ
Ga0209488_105735892	3300027903	Vadose Zone Soil	MSATSHGRRSWKDSPTAKAIAATISLLLIAGLIAVLA
Ga0307296_107917811	3300028819	Soil	MSATSHRRRSWKDSPTAKAIAATISLLLIAGMIAVLAFALLSNAVKLI
Ga0307312_100369974	3300028828	Soil	MIATSHGRRSWKDNSKAKTIAATVSSLLITGLIAVLAFALPSNAVKLP
Ga0307304_104609571	3300028885	Soil	RSWKDSPTAKAIAATISLPLIAGLIAVLAFALLSMH
Ga0308309_105870891	3300028906	Soil	MTAASHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAV
Ga0311366_114082031	3300030943	Fen	MIATSHGRRSWKDSPKAKRIAAIISLLLIAGLIAMLAIAFLSGNVA
Ga0170823_159242502	3300031128	Forest Soil	RAEGEEMTAASHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ
Ga0308194_103688791	3300031421	Soil	MIATSHGRRSWKDNPNAKAIAATISLLLIAGLIAVLAFALLSNAVKLI
Ga0170820_113788122	3300031446	Forest Soil	GSEEMTAASHGRRSWKDSPKAKRIAATISLLLIAGLIAMLAVAFLFTQ
Ga0306919_107719092	3300031879	Soil	GRRSWKDSPKAKRIVRTISTLLIVGLVVALALAFLSMS
Ga0307471_1007241671	3300032180	Hardwood Forest Soil	ARVESEEMTATNHGRRSWKDSPKAKRIAATISLLLIAGLIATLAVAFLFTQ
Ga0316215_10042941	3300033544	Roots	VRSEEMTAASHGRRSWKDSPKAKRIAATISLLSIAGLIAMLAVAFLFTQ

Hidden Markov Model


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