Metagenome / Metatranscriptome Family F084615

Basic Information
Family ID	F084615
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	51 residues
Representative Sequence	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIRPRGWSL
Number of Associated Samples	103
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.857 % of family members)
Environment Ontology (ENVO)	Unclassified (33.929 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.286 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1ICChiseqgaiiFebDRAFT_133060782 2JGI1027J12803_1002635141 3Ga0058897_109852413 4Ga0063356_1044759581 5Ga0066395_107101972 6Ga0058860_115683372 7Ga0066673_106560861 8Ga0066690_109841592 9Ga0066688_105660662 10Ga0066684_106756902 11Ga0065712_101049094 12Ga0065707_102146961 13Ga0066388_1076499861 14Ga0070711_1018200462 15Ga0066689_102972341 16Ga0066681_102617821 17Ga0070684_1006150962 18Ga0066698_109457981 19Ga0066699_111928662 20Ga0066708_103363823 21Ga0066691_106181781 22Ga0068861_1026976102 23Ga0066903_1017179083 24Ga0074470_111681811 25Ga0066651_107725122 26Ga0066651_107924812 27Ga0066696_102646391 28Ga0070716_1010133422 29Ga0075422_103489902 30Ga0066665_110617502 31Ga0075428_1023255221 32Ga0075425_1016715132 33Ga0075434_1003797311 34Ga0075436_1013322241 35Ga0075419_105340041 36Ga0075435_1010632492 37Ga0075418_115542712 38Ga0105242_128361831 39Ga0105252_104522321 40Ga0126384_104260242 41Ga0126382_103874411 42Ga0126382_117863272 43Ga0126382_121911301 44Ga0127492_11066901 45Ga0127475_11115722 46Ga0127498_10678572 47Ga0127455_11630451 48Ga0127484_11643681 49Ga0127499_10204231 50Ga0134088_100522601 51Ga0134071_107468912 52Ga0126370_102245461 53Ga0126376_121445131 54Ga0126372_116641491 55Ga0126372_119746391 56Ga0126377_132431892 57Ga0126379_109191753 58Ga0126379_131725522 59Ga0126381_1038551771 60Ga0134127_135809422 61Ga0134122_102727491 62Ga0134121_104408661 63Ga0150983_108246372 64Ga0137458_11372131 65Ga0137327_10092921 66Ga0137362_102516313 67Ga0137376_106847081 68Ga0150985_1221438272 69Ga0137384_104226173 70Ga0137361_108459251 71Ga0134058_10434671 72Ga0134054_12157353 73Ga0134043_10434432 74Ga0134057_12830921 75Ga0134056_11387903 76Ga0134061_12179861 77Ga0134048_11124471 78Ga0134053_10338921 79Ga0134060_11577011 80Ga0157293_100903881 81Ga0126375_101859264 82Ga0126375_105680952 83Ga0157377_116597902 84Ga0157376_118355793 85Ga0137409_113926871 86Ga0134089_101473192 87Ga0134089_101970962 88Ga0132258_136951113 89Ga0132256_1038573022 90Ga0132257_1013263122 91Ga0132257_1029206911 92Ga0132255_1005915771 93Ga0182036_104660171 94Ga0134074_11425212 95Ga0184639_102452672 96Ga0173479_101612962 97Ga0210399_107180722 98Ga0126371_117962371 99Ga0207680_102045583 100Ga0207704_114358772 101Ga0209468_11528582 102Ga0209472_11000783 103Ga0209159_10908241 104Ga0209378_10205521 105Ga0209156_101249201 106Ga0209466_10639112 107Ga0209486_101769391 108Ga0170824_1124507781 109Ga0306921_117096081 110Ga0306921_126816571 111Ga0310912_103846841 112Ga0370545_052633_676_795
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 1ICChiseqgaiiFebDRAFT_133060782 2JGI1027J12803_1002635141 3Ga0058897_109852413 4Ga0063356_1044759581 5Ga0066395_107101972 6Ga0058860_115683372 7Ga0066673_106560861 8Ga0066688_105660662 9Ga0065707_102146961 10Ga0066388_1076499861 11Ga0070711_1018200462 12Ga0068861_1026976102 13Ga0074470_111681811 14Ga0066651_107725122 15Ga0075428_1023255221 16Ga0126384_104260242 17Ga0127499_10204231 18Ga0126370_102245461 19Ga0126372_119746391 20Ga0126379_109191753 21Ga0134121_104408661 22Ga0137458_11372131 23Ga0137327_10092921 24Ga0137362_102516313 25Ga0126375_105680952 26Ga0157376_118355793 27Ga0134089_101970962 28Ga0132255_1005915771 29Ga0306921_126816571
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0134061_12179861 2ICChiseqgaiiFebDRAFT_133060782 3Ga0058897_109852413 4Ga0066690_109841592 5Ga0066688_105660662 6Ga0066684_106756902 7Ga0065707_102146961 8Ga0070711_1018200462 9Ga0066689_102972341 10Ga0070684_1006150962 11Ga0074470_111681811 12Ga0075422_103489902 13Ga0066665_110617502 14Ga0075434_1003797311 15Ga0075436_1013322241 16Ga0075435_1010632492 17Ga0105242_128361831 18Ga0126384_104260242 19Ga0126382_121911301 20Ga0126370_102245461 21Ga0126376_121445131 22Ga0126372_119746391 23Ga0126379_109191753 24Ga0126379_131725522 25Ga0134127_135809422 26Ga0134121_104408661 27Ga0150983_108246372 28Ga0137458_11372131 29Ga0137327_10092921 30Ga0137362_102516313 31Ga0150985_1221438272 32Ga0137384_104226173 33Ga0157293_100903881 34Ga0126375_101859264 35Ga0126375_105680952 36Ga0157377_116597902 37Ga0157376_118355793 38Ga0132256_1038573022 39Ga0132255_1005915771 40Ga0184639_102452672 41Ga0210399_107180722 42Ga0306921_126816571
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.16% β-sheet: 27.63% Coil/Unstructured: 59.21%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03548	LolA	89.29
PF13432	TPR_16	1.79
PF14559	TPR_19	1.79
PF13414	TPR_11	0.89
PF13460	NAD_binding_10	0.89
PF07719	TPR_2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	89.29

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Scaffold	Taxonomy	Length	IMG/M Link
No data available in table

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.46%
Host-Associated	Host-Associated	20.54%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.46%
Human	Host-Associated → Human	0.89%
Plants	Host-Associated → Plants	19.64%
Terrestrial	Environmental → Terrestrial	75.00%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.61%
Sediment	Environmental → Aquatic → Sediment	4.46%
Soil	Environmental → Terrestrial → Soil	75.00%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	17.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.14%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M

Showing 1 to 10 of 103 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_133060782	3300000363	Soil	MEFVCKYAKASGEVVRVVQVGQNAEEVKHRLQEQGFLPISVKARGRSL
JGI1027J12803_1002635141	3300000955	Soil	MEFTVKYAKPTGEVIKGVLVGQNPDEVRHRLQEQGFLPI
Ga0058897_109852413	3300004139	Forest Soil	MEFNCKYAKPTGEILTDVVVGQSMEEVRHHLQEQGFLPINIRPRGWSLSFRSQKRHQAIKT*
Ga0063356_1044759581	3300004463	Arabidopsis Thaliana Rhizosphere	MEFSCKYTKPTGEVVTAVLVGQNIDEVRHRLNDQGLLPIFIRPR
Ga0066395_107101972	3300004633	Tropical Forest Soil	MEFSCKYAKPTGEVVTTVLVGQNMDEVRHRLQEQGFLPLDVHPRGWSVSFR
Ga0058860_115683372	3300004801	Host-Associated	MEFDCKYAKPSGEIVTATLVGQTLEEVRHHLQEQGLLPISVRQKGW
Ga0066673_106560861	3300005175	Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMDIR
Ga0066690_109841592	3300005177	Soil	MEFSCKYTKPTGEVVTAVLVGQNMEEVRHRLNEQGLLPISIRPRGWSISLRPR
Ga0066688_105660662	3300005178	Soil	MEFTCKYAKPSGEVVKAVLAGQTMEEVRHHLQEQGLLPMEIRPRGWSFSIRPRRRRQTIKAD
Ga0066684_106756902	3300005179	Soil	MEFTVKYAKPTGEVVKTVLIGQNMEEVRHRLQEQGMLPISVRP
Ga0065712_101049094	3300005290	Miscanthus Rhizosphere	MEFDCKYAKPSGEIVTATLVGQTLDEVRHHLQEQGLLPISVRQ
Ga0065707_102146961	3300005295	Switchgrass Rhizosphere	MEFTVKYAKPSGEVVTSVVVGQNPDEVRHRLQEQGFLPIAVRSRNWSFSLRRKRRQTIKPEDFILFNQQ
Ga0066388_1076499861	3300005332	Tropical Forest Soil	MEFTVKYAKPTGEVIKAVLVGQNSDEVRHRIQEQGFLPIDVRSRSFEFSLHPRRRQKVKSEDFIL
Ga0070711_1018200462	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEFNCKYAKPTGEVMTAVVVGQNIAEVRHHLQEQGLLPINIRARGWSLSLRSRKRRQTMKAEDFILFNQQ
Ga0066689_102972341	3300005447	Soil	MEFTCKYAKPSGEVVKVVLVGQNTDEVRHRLQEQGFLPISIRTRGWSISFRPR
Ga0066681_102617821	3300005451	Soil	MEFTCKYAKPSGEVVKVVLVGQNTDEVRHRLQEQGFLPISIRTR
Ga0070684_1006150962	3300005535	Corn Rhizosphere	MEFSCRYAKPTGEVVKTVLVGQNMEEVRHHLQEQGLLPIAIRPRGWSISLRR
Ga0066698_109457981	3300005558	Soil	MEFTCKYAKPSGEVVKAVLVGQNKDEVRHHLQEQGLLPMDIRPRGWSLSLRPRKRPQAI
Ga0066699_111928662	3300005561	Soil	MEFTCKYAKPSGEVVKAVFVGQNIDEVRHHLHEQGLLPMEIRPRGWSLSFRPRKRPQ
Ga0066708_103363823	3300005576	Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGVLPMDIRPRGWSLSLRPR
Ga0066691_106181781	3300005586	Soil	MEFTCRYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMAIRPRG
Ga0068861_1026976102	3300005719	Switchgrass Rhizosphere	MEFRVKYAKPTGEVMKAVLVGQSTDEVRHRLQEQGFLPIDVRTRGWTLSLRPRKRQ
Ga0066903_1017179083	3300005764	Tropical Forest Soil	MEFSCKYAKPTGEVVTTVLVGQNLDEVRHRLQEQGFLPLDVH
Ga0074470_111681811	3300005836	Sediment (Intertidal)	MEFDCKYAKPNGEIVTVRQVGQSMEEVRHHLQDQGLLP
Ga0066651_107725122	3300006031	Soil	MEFSCKYTKPTGEVVSAVLVGQNIEEVRHRLNELGLLPISIRPRGWSISLRPRKG
Ga0066651_107924812	3300006031	Soil	MEFTCKYAKPSGEVVKAVLAGQTIEEVRHHLQEQGLLPMEIRPRGWSFSIRPRRRRQ
Ga0066696_102646391	3300006032	Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMDIRPRGWSLSLRPRKR
Ga0070716_1010133422	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEFSCKYTKPTGEVVTAVLVGQNIEEVRHRLNDQGLLPISIRPRGWSISLRP
Ga0075422_103489902	3300006196	Populus Rhizosphere	MEFDCKYAKPSGEVITATLVGQNLEEVRHHLQEQGLLPIS
Ga0066665_110617502	3300006796	Soil	MEFTCKYARPSGEIVKAVLAGQNVEEVRHHLQEQGLLPIQIRPRGWSLSFRPRKRRQTIKTEDFILFN
Ga0075428_1023255221	3300006844	Populus Rhizosphere	MEFTVKYAKPTGEVVKSVLVGQTVEEVRHRLHEQGLLPIQIRSRGWSISL
Ga0075425_1016715132	3300006854	Populus Rhizosphere	MEFTCKYAKPSGEVVRAVLAGQTIDEVRHHLQEQGLLPMEIRPRGWSLSFRPRRRRQTIKADDFILF
Ga0075434_1003797311	3300006871	Populus Rhizosphere	MEFTVKYAKPTGEVIKSVLVGQNPDEVRHRLQEQGFLPIAIRSRGWSLSLRPRKRR
Ga0075436_1013322241	3300006914	Populus Rhizosphere	MEYTVKYAKPTGEVVKSVLVGQSTDEVRHRLQEQGFLPIAIQSREWSFSLRP
Ga0075419_105340041	3300006969	Populus Rhizosphere	MEFDCKYAKPSGEIVTATLVGQTLDEVRHHLQEQGLLPISVRQKGWALN
Ga0075435_1010632492	3300007076	Populus Rhizosphere	MEFTVKYAKPTGEVVKGVLVGQSTDEVRHRLQEQGFLPIKINSRDWSFS
Ga0075418_115542712	3300009100	Populus Rhizosphere	MEFSCKYTKPTGEVVTAVLVGQNIEEVRHRLNEQGLLPISV
Ga0105242_128361831	3300009176	Miscanthus Rhizosphere	MEFRVKYAKPTGEVMKAVLVGQSTEEVRHRLQEQGFLPIDVRTRGWTLSFSTRKRQQSIKTEDFILFNQ
Ga0105252_104522321	3300009678	Soil	MEFDCRYAKPSGEIVQVTQNGQSLEEVRHRLQEQGLLPISVKAK
Ga0126384_104260242	3300010046	Tropical Forest Soil	MEFTCRYTKPTGEVVRTVLVGQNLDEVRHRLQEQGLLPIDIRPRGWSFSPRRRQR
Ga0126382_103874411	3300010047	Tropical Forest Soil	MEFTVKYAKPTGEVIKGVLVGQNPDEVRHRLQEQGFLPIAIHSRG
Ga0126382_117863272	3300010047	Tropical Forest Soil	MEFRVKYAKPTGEVMKAVLVGQSTEEVRHRLQEQGFLPIDVRSRGWTLSLR
Ga0126382_121911301	3300010047	Tropical Forest Soil	MEFTVKYAKPTGEVVKSVLVGQTVEEVRHRLHEQGLLPIQIRSRGWSISFRSRKREHKIKTEDFI
Ga0127492_11066901	3300010087	Grasslands Soil	MEFTCRYAKPSGEVVKAVLVGQNIDEVRHHLQEQGL
Ga0127475_11115722	3300010095	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLL
Ga0127498_10678572	3300010124	Grasslands Soil	MEFNCKYAKPSGEVVKAVLVGQNMDEVQHRLQEQGFLPMAIRPRGGWSIS
Ga0127455_11630451	3300010132	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLL
Ga0127484_11643681	3300010134	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMDIRPRGW
Ga0127499_10204231	3300010141	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGVLPMDIRPRGWSLSLRPRRRPQAIKDEDFIL
Ga0134088_100522601	3300010304	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGVLPMDIRPRGWSLS
Ga0134071_107468912	3300010336	Grasslands Soil	MEFTCKYAKPSGEVVKVVLAGQNTDEVRHRLQEQGLLPISIRTRGWSISL
Ga0126370_102245461	3300010358	Tropical Forest Soil	MEFNCKYAKPTGEIMTAVVVGQNMEEVRHNLQEQGLLPINVRPRGWSF
Ga0126376_121445131	3300010359	Tropical Forest Soil	MEFTCKYAKPNGEVIKAVLVRQSTEEVRHHLQEQGL
Ga0126372_116641491	3300010360	Tropical Forest Soil	MEFSCKYAKPTGEVVTTVLVGQNMDEVRHRLQEQGFLPLDVHPRAWSVSFRRRKRQQTVKPDDFI
Ga0126372_119746391	3300010360	Tropical Forest Soil	MEFTCKYAKPTGEVIKTVLVGQTMQEVRHHLQEQGLLPIDIRPRGWSISFRKRKQQTIKSDDFILYNQQ
Ga0126377_132431892	3300010362	Tropical Forest Soil	MEFTCKYAKPSGEVIRAVLVGQNVDEVRHHLQEQGLLPMDIRPRGWSLSLRPRKRP
Ga0126379_109191753	3300010366	Tropical Forest Soil	MEYSCKYAKPTGEVVTTVLVGQNMDEVRHRLQEQGFLPLDVHPRAWSVSFRRRKRQQTVKPDDFLLFNQ
Ga0126379_131725522	3300010366	Tropical Forest Soil	MEFTVKYAKPTGEVVKSVLVGQNSDEVRHRIQEQGFLPIDIRSRSFEFSLRPRRRQKVKS
Ga0126381_1038551771	3300010376	Tropical Forest Soil	MEFTVKYAKPTGEVIKSVLVGQNTDEVRHRLQEQGFL
Ga0134127_135809422	3300010399	Terrestrial Soil	MEFTVKYAKPTGEVVKSVLVGQNLEEVRHRLQEQGLLPIDIRPKGFSIS
Ga0134122_102727491	3300010400	Terrestrial Soil	MEFRVKYAKPTGEVMKAVLVGQSTEEVRHRLQEQGFLP
Ga0134121_104408661	3300010401	Terrestrial Soil	MEFNVKYAKQSGEVVTATLIGQNMDEVRHRLQEQGFLPITVRSKTFSLRPR
Ga0150983_108246372	3300011120	Forest Soil	MEFTVKYAKPTGEVVKTALVGQNAEEVRHHLQEQGMLP
Ga0137458_11372131	3300011436	Soil	MEFDCRYAKPSGEIVQVTQNGQSLEEVRHRLQEQGLLPISVKPKGWARALG
Ga0137327_10092921	3300012173	Soil	MEFRVKYAKPTGEVVKVVLVGQNTDEVRHRLQEQGFLPIAIRSRRALSLRPQKRQQTIKRDDFILF
Ga0137362_102516313	3300012205	Vadose Zone Soil	MEFNCKYAKPSGEVVKAVLVGQSMDEVQHRLQEQGFLPMAIRPRGWSISLRRRKRQETVKSEDFIMF
Ga0137376_106847081	3300012208	Vadose Zone Soil	MEFTCKYAKPSGEVVKAVLVGQNKDEVRHHLQEQGLLPM
Ga0150985_1221438272	3300012212	Avena Fatua Rhizosphere	MEYSVKYAKPTGEIVKAVLVGQNMEEVRHRLQEQGFLPIDVSTRSWSLPLRPRK
Ga0137384_104226173	3300012357	Vadose Zone Soil	MEFTCRYAKPTGEIVKAVLVGQNMEEVQHRLQEQGLLPIAIRP
Ga0137361_108459251	3300012362	Vadose Zone Soil	MEFTCKYARPSGEIVKAVLAGQNVEEVRHHLQEQGLLPIQIR
Ga0134058_10434671	3300012379	Grasslands Soil	MEFTCKYARPSGEIVKAVLAGQNVEEVRHHLQEQGLLPIQIRP
Ga0134054_12157353	3300012390	Grasslands Soil	MEFTCKYAKPSGEVVKAVLVGQNMDEVRHHLQEQG
Ga0134043_10434432	3300012392	Grasslands Soil	MEFTFKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMDIRPRGWSLSLRPRKRPQAIKDE
Ga0134057_12830921	3300012396	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIRPRGWSLSLRP
Ga0134056_11387903	3300012397	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIRPRGWSLSLRPRKRPQAIKDE
Ga0134061_12179861	3300012399	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIRPRGWSL
Ga0134048_11124471	3300012400	Grasslands Soil	MEFTCKYAKPSGEVVKAVLVGQNKDEVRHHLQEQG
Ga0134053_10338921	3300012406	Grasslands Soil	MEFTCKYAKPSGEVVKAVLVGQNMDEVRHHLQEQGLLPMEIR
Ga0134060_11577011	3300012410	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMDIRPRGWSLSLRPRRRPQAIK
Ga0157293_100903881	3300012898	Soil	MEFDCKYAKPSGEIVTATLVGQTLDEVRHHLQEQGLLPISVRQKGWALNLK
Ga0126375_101859264	3300012948	Tropical Forest Soil	MEFTCKYAKPSGEVVKAVFVGQNMDEVRHHLQEQGLLPMEIRARGWSLSFRPRKRPLAIKKEDFILFNQQF
Ga0126375_105680952	3300012948	Tropical Forest Soil	MEFTVKYAKPSGEVVTATLVGQNTDEVRHRLHEQGFLPIDIRTRGFSFS
Ga0157377_116597902	3300014745	Miscanthus Rhizosphere	VEFDCRYAKPSGEIVQVTQNGQSLEEVRHRLQEQGLLPISVRAKGWSLSLG
Ga0157376_118355793	3300014969	Miscanthus Rhizosphere	MEFIVRYAKPTGEIVKSVHVGQTVDDVRHRLQEQGFLPMSVRPRGWSFSLAPRRRRDE
Ga0137409_113926871	3300015245	Vadose Zone Soil	MEFTCKYAKPSGEVVKAVLAGQTIDEVRHHLQEQGLLPMEIRPRGWSFSIRPRRRRQTIKADDFILTVFTSSPSS*
Ga0134089_101473192	3300015358	Grasslands Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIRPRGWSLSLRPRKR
Ga0134089_101970962	3300015358	Grasslands Soil	MEFTCKYAKPSGEVVKVVLVAQNTDEVRHRLQEQGFLPISIRTRGWSLSLRPRMMRWEYKNPE
Ga0132258_136951113	3300015371	Arabidopsis Rhizosphere	MEFVCKYAKASGEVVTAVQVGQNAEEVKHRLQEQGFLPISVKARGWSLSAATSSRC
Ga0132256_1038573022	3300015372	Arabidopsis Rhizosphere	MEFVCKYAKATGEVVKVVQVGQNADDVRHRLQEQGFLPISVEPRGWSLS
Ga0132257_1013263122	3300015373	Arabidopsis Rhizosphere	MEFTVKYAKPTGEVVKSVLVGQTVEEVRHRLHEQGLLPIQIRSRGWSISFRSRKREHKI
Ga0132257_1029206911	3300015373	Arabidopsis Rhizosphere	MEFTVKYAKPTGEVVKSVLAGQNSDEVRHRIQEQGFLPIDI
Ga0132255_1005915771	3300015374	Arabidopsis Rhizosphere	MEFTVKYAKPSGETVTATLVGQNTEEVRHHLQEQGFLPIDIRSRGWAFSLQPRKRHQTIKPDDFILFNQQFV
Ga0182036_104660171	3300016270	Soil	MEFSCKYAKPTGEIVKTVLVGQNIEEVRHRLQEQGLLPIDVHPRGWSISFRRQKRQQTIKPEDFILFNQQ
Ga0134074_11425212	3300017657	Grasslands Soil	MEFTCKYAKPSGEVVKVVLVGQNTDEVRHRLQEQGFLPISIRTRGWSISFRPRRRETIK
Ga0184639_102452672	3300018082	Groundwater Sediment	MEFSCKYTKPTGEVVKAVLVGQNIDEVRHRLHEQGLLPISVRPRGWS
Ga0173479_101612962	3300019362	Soil	MEFDCKYAKPSGEIVTATLVGQTLDEVRHHLQEQGLLPISV
Ga0210399_107180722	3300020581	Soil	MEFTVKYAKPTGEVIKTVLVGLNVEEVRHHLQEQGMLPITVRSR
Ga0126371_117962371	3300021560	Tropical Forest Soil	MEFTVKYAKPTGEVIKSVLIGQNTDEVRHRLQEQGFLPIAIRSRGWTFSLRPRKRRQTVKPDDFILFNQQ
Ga0207680_102045583	3300025903	Switchgrass Rhizosphere	MEFDCKYAKPSGEIVTATLVGQTLEEVRHHLQEQGLLPISVR
Ga0207704_114358772	3300025938	Miscanthus Rhizosphere	MEFDCKYAKPSGEIVSATLVGQTLDEVRHHLQEQGLLPISVR
Ga0209468_11528582	3300026306	Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIR
Ga0209472_11000783	3300026323	Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGLLPMAIRPRG
Ga0209159_10908241	3300026343	Soil	MEFTCKYAKPSGEVVKVVLVGQNTDEVRHRLQEQGFLPISIRTRGWSISFRPRRRETIKPDDFIHFNQQFI
Ga0209378_10205521	3300026528	Soil	MEFTCKYAKPSGEVIKAVLVGQNIEEVRHHLQEQGVLPMDIRPRGWSLSLRPRRRPQAIKDEDFILFNQ
Ga0209156_101249201	3300026547	Soil	MEFTCKYAKPSGEVIKAVLVGQNIDEVRHHLQEQGLLPMDIRPRGWSLSLRPRKRPQAIKDEDFIL
Ga0209466_10639112	3300027646	Tropical Forest Soil	MEFTVKYAKPTGEVIKSVLVGQNPDEVRHRLQEQGFLPIA
Ga0209486_101769391	3300027886	Agricultural Soil	MEFDCKYAKPSGEIVTATVAGQSLEEVRHHLQEQGLLPISVR
Ga0170824_1124507781	3300031231	Forest Soil	MEFTCRYTKPTGEVVRAVLVGQNMEEVRHRLHEQGLLPIDIRPRGWSF
Ga0306921_117096081	3300031912	Soil	MEFSCKYAKPTGEIVKTVLVGQNIEEVRHRLQEQGLLPI
Ga0306921_126816571	3300031912	Soil	MEFSCKYAKSTGEIVKTVVVGQNIEEVRHRLQEQGLLPIDVRPRGWSISFRRQKRQQSIKPEDFILFN
Ga0310912_103846841	3300031941	Soil	MEFTVKYAKPTGEVVKAVLVGQNSDEVRHRIQEQGFLPIDV
Ga0370545_052633_676_795	3300034643	Soil	MEFSCKYTKPTGEVVTAVLVGQNIEEVRHRLNEQGLLPIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084615

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences