Metagenome / Metatranscriptome Family F084612

Basic Information
Family ID	F084612
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	82 residues
Representative Sequence	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRCLSATSDAVGG
Number of Associated Samples	86
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.21 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	90.18 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (67.857 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (62.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.321 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1JGI10216J12902_1078523961 2Ga0062594_1013935282 3Ga0065715_104146872 4Ga0070658_100911792 5Ga0070670_1001737143 6Ga0070677_100343212 7Ga0068868_1005433711 8Ga0068868_1022814161 9Ga0070689_1004858791 10Ga0070668_1016665911 11Ga0070669_1008749971 12Ga0070675_1000623534 13Ga0070675_1002118281 14Ga0070671_1007462482 15Ga0070663_1014622832 16Ga0070678_1007685122 17Ga0070678_1011756662 18Ga0068867_1017065051 19Ga0068853_1007300041 20Ga0070672_1002194702 21Ga0070672_1013027282 22Ga0070672_1016425771 23Ga0070693_1004726912 24Ga0068856_1002980932 25Ga0068852_1005265012 26Ga0068864_1011697492 27Ga0068861_1016649391 28Ga0068860_1023635391 29Ga0070716_1010537682 30Ga0068871_1004095872 31Ga0068871_1009002642 32Ga0074048_123142301 33Ga0105243_115231371 34Ga0105242_109991032 35Ga0105248_113170272 36Ga0134066_104180551 37Ga0157292_100115511 38Ga0157282_100817381 39Ga0157290_104495641 40Ga0157306_101051361 41Ga0157298_100488112 42Ga0157374_110035501 43Ga0157380_105097961 44Ga0157379_110522312 45Ga0157376_123293031 46Ga0132258_103934506 47Ga0184611_12698281 48Ga0066662_102825042 49Ga0190270_131165962 50Ga0190274_105000361 51Ga0190274_116204232 52Ga0190274_137588441 53Ga0190271_100091106 54Ga0190273_106854892 55Ga0173479_105319712 56Ga0247779_10657692 57Ga0247776_103574631 58Ga0207697_100398352 59Ga0209584_100420443 60Ga0207682_100108565 61Ga0207682_100853323 62Ga0207680_101861851 63Ga0207645_102412473 64Ga0207643_105665692 65Ga0207643_107003831 66Ga0207649_112298611 67Ga0207681_104580811 68Ga0207681_108189702 69Ga0207681_113768362 70Ga0207650_102064043 71Ga0207650_118291151 72Ga0207701_100735715 73Ga0207701_101686631 74Ga0207701_115899372 75Ga0207644_104047642 76Ga0207686_114525502 77Ga0207709_109806401 78Ga0207704_102579292 79Ga0207691_105782601 80Ga0207691_106066051 81Ga0207691_112348131 82Ga0207711_100928793 83Ga0207679_109481152 84Ga0207679_109651182 85Ga0207712_104648222 86Ga0207668_113500172 87Ga0207677_119170642 88Ga0207702_104261583 89Ga0207676_109136112 90Ga0207674_119140231 91Ga0207675_1007834962 92Ga0207675_1011284501 93Ga0207683_102224243 94Ga0207683_102771782 95Ga0207698_103507412 96Ga0268266_111386622 97Ga0247828_100404143 98Ga0307498_100027253 99Ga0307506_102011912 100Ga0308175_1002948573 101Ga0308175_1025995502 102Ga0308174_100124012 103Ga0308174_101304582 104Ga0308174_102053293 105Ga0308176_121703882 106Ga0308173_101051802 107Ga0308173_101153332 108Ga0308173_102235302 109Ga0308173_109226011 110Ga0310896_108415022 111Ga0247829_116436261 112Ga0370484_0052267_734_1015
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1JGI10216J12902_1078523961 2Ga0062594_1013935282 3Ga0070658_100911792 4Ga0070670_1001737143 5Ga0070663_1014622832 6Ga0068853_1007300041 7Ga0070672_1016425771 8Ga0068856_1002980932 9Ga0070716_1010537682 10Ga0134066_104180551 11Ga0066662_102825042 12Ga0190274_116204232 13Ga0190274_137588441 14Ga0190273_106854892 15Ga0209584_100420443 16Ga0207680_101861851 17Ga0207691_112348131 18Ga0308175_1025995502 19Ga0310896_108415022 20Ga0370484_0052267_734_1015
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1Ga0070669_1008749971 2JGI10216J12902_1078523961 3Ga0065715_104146872 4Ga0070670_1001737143 5Ga0070677_100343212 6Ga0068856_1002980932 7Ga0070716_1010537682 8Ga0157290_104495641 9Ga0132258_103934506 10Ga0066662_102825042 11Ga0190274_137588441 12Ga0190271_100091106 13Ga0190273_106854892 14Ga0209584_100420443 15Ga0207645_102412473 16Ga0207643_105665692 17Ga0247828_100404143 18Ga0307498_100027253 19Ga0308175_1002948573 20Ga0308174_100124012 21Ga0308174_102053293 22Ga0308176_121703882 23Ga0308173_101051802 24Ga0310896_108415022 25Ga0370484_0052267_734_1015
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 57.41% β-sheet: 4.63% Coil/Unstructured: 37.96%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03721	UDPG_MGDP_dh_N	34.82
PF05292	MCD	12.50
PF13458	Peripla_BP_6	10.71
PF01094	ANF_receptor	1.79
PF00782	DSPc	1.79
PF00883	Peptidase_M17	0.89
PF16200	Band_7_C	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	34.82
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	34.82
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	34.82
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	34.82
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	34.82
COG0683	ABC-type branched-chain amino acid transport system, periplasmic component	Amino acid transport and metabolism [E]	1.79
COG0260	Leucyl aminopeptidase	Amino acid transport and metabolism [E]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	32.14 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	32.14 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.14 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.57 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	20.54 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	17.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.79 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	1.79 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.68 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Kiloniellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae	0.89 %
Unclassified	root	N/A	67.86 %

Name	Rank	Taxonomy	Distribution
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	0.89 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	0.89 %
Mitsuaria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria	0.89 %
Unclassified	root	N/A	67.86 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.89 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	0.89 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	0.89 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	1.79 %
Unclassified	root	N/A	67.86 %
unclassified Mitsuaria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria	0.89 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.89 %

Name	Rank	Taxonomy	Distribution
Burkholderia pseudomallei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	1.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	0.89 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	0.89 %
Mitsuaria sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria → Mitsuaria sp.	0.89 %
Unclassified	root	N/A	67.86 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.89 %

Name	Rank	Taxonomy	Distribution
Burkholderia pseudomallei 1710b	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	1.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	0.89 %
Kiloniella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Kiloniellaceae → Kiloniella	0.89 %
Mitsuaria sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria → Mitsuaria sp.	0.89 %
Unclassified	root	N/A	67.86 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.89 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_107852396	Not Available	566	Open in IMG/M
3300005093\|Ga0062594_101393528	Not Available	711	Open in IMG/M
3300005293\|Ga0065715_10414687	Not Available	865	Open in IMG/M
3300005327\|Ga0070658_10091179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2512	Open in IMG/M
3300005331\|Ga0070670_100173714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1869	Open in IMG/M
3300005333\|Ga0070677_10034321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1959	Open in IMG/M
3300005338\|Ga0068868_100543371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Mitsuaria → unclassified Mitsuaria → Mitsuaria sp.	1023	Open in IMG/M
3300005338\|Ga0068868_102281416	Not Available	516	Open in IMG/M
3300005340\|Ga0070689_100485879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1056	Open in IMG/M
3300005347\|Ga0070668_101666591	Not Available	585	Open in IMG/M

Showing 1 to 10 of 112 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	38.39%
Host-Associated	Host-Associated	61.61%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.89%
Plants	Host-Associated → Plants	61.61%
Terrestrial	Environmental → Terrestrial	37.50%

Habitat	Taxonomy	Distribution
Plant Litter	Environmental → Terrestrial → Plant Litter	1.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.61%
Roots	Host-Associated → Plants → Roots	1.79%
Sediment	Environmental → Aquatic → Sediment	0.89%
Soil	Environmental → Terrestrial → Soil	35.71%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.86%
Loam	Environmental → Terrestrial → Soil → Loam	2.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	26.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	3.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	26.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	3.57%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	10.71%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M

Showing 1 to 10 of 86 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1078523961	3300000956	Soil	MKRSTTSGAAVRRIFVLVSCLGAMVLALYSCSMHASVSTDGAGHVVEVSSVRIESSLARVAVAMLVAGGQVALELRWMRGLGVDVVDGIGS*
Ga0062594_1013935282	3300005093	Soil	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRW
Ga0065715_104146872	3300005293	Miscanthus Rhizosphere	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG*
Ga0070658_100911792	3300005327	Corn Rhizosphere	VRRILVLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG*
Ga0070670_1001737143	3300005331	Switchgrass Rhizosphere	VRRTIVLLAGLCATVLALYSCSMHASVMTDADGHVVNVSSLRVESSLARVAVAMLVAGGQVALELRWSRCVDAPSGATLDG*
Ga0070677_100343212	3300005333	Miscanthus Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLAAGGQVALELRWMRCPIGAPSDSLGG*
Ga0068868_1005433711	3300005338	Miscanthus Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLVAGGQVALELRWM
Ga0068868_1022814161	3300005338	Miscanthus Rhizosphere	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELR
Ga0070689_1004858791	3300005340	Switchgrass Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWMRCLSATTSDAV
Ga0070668_1016665911	3300005347	Switchgrass Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSVRVESSLARVAVAMLVAGGQVALELRWIRCLGATSDSGGG*
Ga0070669_1008749971	3300005353	Switchgrass Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRCLSATSDAVGG*
Ga0070675_1000623534	3300005354	Miscanthus Rhizosphere	MGHRANPGAAVRRILVLISCLAVTVLALYSCSMHASVTTDLEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG*
Ga0070675_1002118281	3300005354	Miscanthus Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD*
Ga0070671_1007462482	3300005355	Switchgrass Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLVAGGQVALELRWMRCPIGAPSDSLGG*
Ga0070663_1014622832	3300005455	Corn Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLVAGGQVALELRWMRCPIGLP
Ga0070678_1007685122	3300005456	Miscanthus Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLAAGGQVALELRWMRCPIGLPSDSLGG*
Ga0070678_1011756662	3300005456	Miscanthus Rhizosphere	VRRILVLISCLAVTVLALYSCSMHASVTTDLEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG*
Ga0068867_1017065051	3300005459	Miscanthus Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHIVEVSSVRVESTLARVAVAMLVAGGQVALELRWMR
Ga0068853_1007300041	3300005539	Corn Rhizosphere	ATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWLRSLSATTSGAAGD*
Ga0070672_1002194702	3300005543	Miscanthus Rhizosphere	MGHRANPGAAVRRILVLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG*
Ga0070672_1013027282	3300005543	Miscanthus Rhizosphere	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVTVAMLVAGGQFALEMRWMRRLSAATNHAAGG*
Ga0070672_1016425771	3300005543	Miscanthus Rhizosphere	MHPSDDPGALVRRILVIVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWMRCLSATTSDAVGG*
Ga0070693_1004726912	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	GAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSRARLAVAMLVAGGQVALELRWMRCPIGAPSDSLGG*
Ga0068856_1002980932	3300005614	Corn Rhizosphere	VRRPIFLVTSVCAALLALYSCSMRAALSTDDDGHIVEVSSVRLESSLARVAVALVLGRQVAVELRWLAACDEPPCDKRGG*
Ga0068852_1005265012	3300005616	Corn Rhizosphere	MRTSEISGAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLAAGGQVALELRWMRCPIGLPSDSLGG*
Ga0068864_1011697492	3300005618	Switchgrass Rhizosphere	MGHRANPGAAVRRILVLISCLAATVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD*
Ga0068861_1016649391	3300005719	Switchgrass Rhizosphere	GRATMHPPTTSGALVRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG*
Ga0068860_1023635391	3300005843	Switchgrass Rhizosphere	MHPSDDPGALVRRILVIVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWMRCPIGLPS
Ga0070716_1010537682	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AAALRCDRQTTSGVPVRRALVLVSCFCAAVLALYSCSMQAFVTTDGDGHIVQVSSVRVESSLARVAVAMLVAGGQVALELRWMRGLGGTTSSTVGG*
Ga0068871_1004095872	3300006358	Miscanthus Rhizosphere	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELGWMRRLSAATNHAAGG*
Ga0068871_1009002642	3300006358	Miscanthus Rhizosphere	VRRILVLISCLAVTVLALYSCSMHASVTTDLEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGGSGE*
Ga0074048_123142301	3300006581	Soil	GALVRRILVIVSCLCATVLALHSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWMRSLNATTSGAVGG*
Ga0105243_115231371	3300009148	Miscanthus Rhizosphere	MHPPPTTSGALVRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG*
Ga0105242_109991032	3300009176	Miscanthus Rhizosphere	MVLALYSCSMHASVTTAGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSAMSDAVGG*
Ga0105248_113170272	3300009177	Switchgrass Rhizosphere	MGHRANPGAAVRRILVLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGLAVAMLVAGGQVALELRWMRCLGGRTSGSLGG*
Ga0134066_104180551	3300010364	Grasslands Soil	LCARALALSLYSCSLHASVTTDGERHIVEVSSVRLESSLARVAVAMLIAGGRVALELRWIRSLDAATAGAVAG*
Ga0157292_100115511	3300012900	Soil	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVELSSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD*
Ga0157282_100817381	3300012904	Soil	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLARVAVAMLVAGGQVALELRWLRSLSATTSGAAGG*
Ga0157290_104495641	3300012909	Soil	VGRILVLVSCLCAAVLALYSCSMHASVTTDGDGHIVEISSLRVESALARLAVAMLVAGAQVAVELRWMRC*
Ga0157306_101051361	3300012912	Soil	VGRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD
Ga0157298_100488112	3300012913	Soil	VGRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD*
Ga0157374_110035501	3300013296	Miscanthus Rhizosphere	LRRILVLVSCLCTAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD*
Ga0157380_105097961	3300014326	Switchgrass Rhizosphere	MHPSTTSGALVRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG*
Ga0157379_110522312	3300014968	Switchgrass Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGG*
Ga0157376_123293031	3300014969	Miscanthus Rhizosphere	MHPPTTSGALVRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG*
Ga0132258_103934506	3300015371	Arabidopsis Rhizosphere	PGAFVRRTLVFVSCLCATLLALYSCSMHALVTTDGNGHIVEVASVRVESSLARVAVAMLVAGGQVALELRWMRCAIGSPGDGLGG*
Ga0184611_12698281	3300018067	Groundwater Sediment	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVAISSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG
Ga0066662_102825042	3300018468	Grasslands Soil	VRRTLLLTGSLAATLLALYSCSMHAEVTTDDGGHIVDVSSVRFESSLSRVAVAMLVAGGNVALELRWDGCLVASSGTHQNG
Ga0190270_131165962	3300018469	Soil	LALYSCSMHASVTTDGDGHIVEVSSLRVESSLARVAVAMLVAGGQIALELRWIRSLNATTSGAVGG
Ga0190274_105000361	3300018476	Soil	VRRILVLVSCLCAGVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATTGDALGG
Ga0190274_116204232	3300018476	Soil	LRRILVLASCLCALVLALYSCSMHASVATDGNGHIVGVSSLRVESSLARVAVAMMVAGGQIALELRWIRRLSTAMNDAAGG
Ga0190274_137588441	3300018476	Soil	FPFVRRSRGGRATMRPFANPGAAVRRTFVVISCLCATVLALYSCSMHASVTTDIDGHVVEVSSVRVESSLARVAVAMLVVGGQVALELRWMRSLGGGSVGG
Ga0190271_100091106	3300018481	Soil	LRRILVLASCLCALVLALYSCSMHASVATDGNGHIVGVSSLRVESSLARVAVAMMVAGGQIALELRWIRRLSTPMNDAAGG
Ga0190273_106854892	3300018920	Soil	VRRTLILVSCLSAAILGLYSCSMHAAFATDGAGHVVRVSSIRLESSLVRVALEMLVAGGEFAVELRWLRDLGAEPGAALGG
Ga0173479_105319712	3300019362	Soil	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG
Ga0247779_10657692	3300022908	Plant Litter	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD
Ga0247776_103574631	3300023275	Plant Litter	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATT
Ga0207697_100398352	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASMTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWLRSLSATTSGAAGD
Ga0209584_100420443	3300025878	Arctic Peat Soil	LRRILIIASCLCAATLALYSCSMHAEVTTDGQGRVVGVSSIRLESSLARVAVAMLVAGGQLAVELRWQHSFSPRD
Ga0207682_100108565	3300025893	Miscanthus Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG
Ga0207682_100853323	3300025893	Miscanthus Rhizosphere	MRTSEISGAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLAAGGQVALELRWMRCPIGLPSDSL
Ga0207680_101861851	3300025903	Switchgrass Rhizosphere	MRTSEISGAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLVAGGQVAL
Ga0207645_102412473	3300025907	Miscanthus Rhizosphere	VRRILVLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTGGSLGG
Ga0207643_105665692	3300025908	Miscanthus Rhizosphere	VRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD
Ga0207643_107003831	3300025908	Miscanthus Rhizosphere	VRLILFLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG
Ga0207649_112298611	3300025920	Corn Rhizosphere	MGHRANPGAAVRRILVLISCLAVTVLALYSCSMHASVTTDLEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGRTSGSLGG
Ga0207681_104580811	3300025923	Switchgrass Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSVRVESSLARVAVAMLVAGGQVALELRWIRCLGATSDSGGG
Ga0207681_108189702	3300025923	Switchgrass Rhizosphere	TRLRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG
Ga0207681_113768362	3300025923	Switchgrass Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTS
Ga0207650_102064043	3300025925	Switchgrass Rhizosphere	VRRILVLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG
Ga0207650_118291151	3300025925	Switchgrass Rhizosphere	VRRTIVLLAGLCATVLALYSCSMHASVMTDADGHVVNVSSLRVESSLARVAVAMLVAGGQVALELRWSRCVDAPSGATLDG
Ga0207701_100735715	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEISSLRVESSLARVAVAMLVAGGQVALELRWIRCLSATSDAVGG
Ga0207701_101686631	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RLRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG
Ga0207701_115899372	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLVAGGQVALELRWMRCPIGAPSDSLGG
Ga0207644_104047642	3300025931	Switchgrass Rhizosphere	MRTSEISGAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLVAGGQVALELRWMRCPIGAPSDSLGG
Ga0207686_114525502	3300025934	Miscanthus Rhizosphere	ATVLALYSCSMHASVTTAGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWLRSLSTTTSGAAGG
Ga0207709_109806401	3300025935	Miscanthus Rhizosphere	MHPSDDPGALVRRILVIVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG
Ga0207704_102579292	3300025938	Miscanthus Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRCLSATSDAVGG
Ga0207691_105782601	3300025940	Miscanthus Rhizosphere	VRRILVLVSCLCATVLSLYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG
Ga0207691_106066051	3300025940	Miscanthus Rhizosphere	MHPSDDPGALVRRILVIVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWMRCLSATTSDAVGG
Ga0207691_112348131	3300025940	Miscanthus Rhizosphere	CLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRWMRRLSAATNHAAGG
Ga0207711_100928793	3300025941	Switchgrass Rhizosphere	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVVGGQFALELRWMRRLSAATNHAAGG
Ga0207679_109481152	3300025945	Corn Rhizosphere	RRGGRATMGHRANPGAAVRRILVLISCLAATVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG
Ga0207679_109651182	3300025945	Corn Rhizosphere	VRRTLVLVSCLCAMVLALYSCSMHASVTTDGEGHVVEISSVRVESSLARVAVAMLVAGGQVALELRWMRGLTTASDVGG
Ga0207712_104648222	3300025961	Switchgrass Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGG
Ga0207668_113500172	3300025972	Switchgrass Rhizosphere	VRRILVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQFALELRWIRCLSATSDAVG
Ga0207677_119170642	3300026023	Miscanthus Rhizosphere	LRRILVLVSCLCAAVLTLYSCSMHAAVTTDNDGQVVGISSLRVESSLARVAVAMLVAGGQFALELRWMR
Ga0207702_104261583	3300026078	Corn Rhizosphere	VRRPIFLVTSVCAALLALYSCSMRAALSTDDDGHIVEVSSVRLESSLARVAVALVLGRQVAVELRWLAACDEPPCDKRGG
Ga0207676_109136112	3300026095	Switchgrass Rhizosphere	MGHRANPGAAVRRILVLISCLAATVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLARVAVAMLVAGGQVALELRWLRSLSATTSGAAGD
Ga0207674_119140231	3300026116	Corn Rhizosphere	CAMVLALYSCSMHASVTTDGEGHVVEISSVRVESSLARVAVAMLVAGGQVALELRWMRGLTTASDVGG
Ga0207675_1007834962	3300026118	Switchgrass Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHAAVTTDGDGHIVGISSLRVESSLSRVAVAMLVAGGKVALELRWLRSLSATTSGAAGD
Ga0207675_1011284501	3300026118	Switchgrass Rhizosphere	ATMRTSEISGAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLAAGGQVALELRWMRCPIGLPSDSLGG
Ga0207683_102224243	3300026121	Miscanthus Rhizosphere	MRTSEISGAFVRRTLVLVSCLCAALLALYSCSMHASVTTDGNGHVVEVSSVRMESSLARLAVAMLAAGGQVALELRWMRCPIGLPSDSLGG
Ga0207683_102771782	3300026121	Miscanthus Rhizosphere	MGHRANPGAAVRRILVLISCLAVTVLALYSCSMHASVTTDLEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG
Ga0207698_103507412	3300026142	Corn Rhizosphere	LRRILVLVSCLCAAVLALYSCSMHASVTTDPEGKVVEVSSLRVESSLAGVAVAMLVAGGQVALELRWMRCLGGCTSGSLGG
Ga0268266_111386622	3300028379	Switchgrass Rhizosphere	LRRILVLVSCLCATVLALYSCSMHAAVTSDDDGHIVGISSLRVESSLSRVAVAMLVAGGQVALELRWLRSLSATTSGAAGD
Ga0247828_100404143	3300028587	Soil	VRRILVLVSCLCATMLALYSCSMHASVTTDYDGHIVEVSSLRVQSSLARVAVAMLVAGGQVALELRWIRSLSATSGAAGA
Ga0307498_100027253	3300031170	Soil	VHRILVLVSCLCATVLALYSCSMHAAVTTDGNGHIVEISSLRVESSLARVAVAMMVAGGQIAVELRWIRSLNATTNSAVGG
Ga0307506_102011912	3300031366	Soil	MHPSDDPGALVRRILVIVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARLAVAMLIAGGQVALELRWIRGLSATTSDAVGG
Ga0308175_1002948573	3300031938	Soil	VRRALVLVSCFFAALVALYSCSMHASVTMDRDGHVVEVSSLRVESSLARVAVAMLVAGGQVALELRWMRGLGGGGGTIGG
Ga0308175_1025995502	3300031938	Soil	VQRVLILVSSLGAAALALYSCSMHAALTTDGNGRIVEVASVRLESSLSRVAVAMLVAGGQLAVELRWI
Ga0308174_100124012	3300031939	Soil	VRRTLVLLGCLCAGALALSLYSCSLHASVTTDGEGHIVEVSSVRLESSLARVAVAMLIAGGRVALELRWIRSLDAATAGAVAG
Ga0308174_101304582	3300031939	Soil	VRRPIFLVTSLCAALLALYSCSMRAALSTDDDGHIVEVSSVRLESSLARVAVALVVGRQVAVELRWLAACDEPPCDKRGG
Ga0308174_102053293	3300031939	Soil	VRRPIFLVSALCAVLLALYSCSMRAALSTDGDGHIVKVSSVRLESSLARVAVALVVGSQVAVELRWLAACDEPPCDKRGG
Ga0308176_121703882	3300031996	Soil	VQRVLILVSSLGAAALALYSCSMHAALTTDSNGRIVEVASVRLESSLSRVAVAMLVAGGQLAVELRWIRGLAPPGELGS
Ga0308173_101051802	3300032074	Soil	LRRTLVLVSCLCAAVLALYSCSMHASVATDGNGHVVEVSSVRVESSLARVAVAMLLAGGQVALELRWMRCFGATTGTTVGG
Ga0308173_101153332	3300032074	Soil	VRRTLVLLGCLCAGALAFSLYSCSLHASVTTDGEGHIVEVSSVRLESSLARVAVAMLIAGGRVALELRWIRSLDAATVAG
Ga0308173_102235302	3300032074	Soil	VRRTLVVVSCLCATLLALYSCSMHASVTTDGNGHIVEVSSVRVESSLARLAVAMLVAGGQVALELRWMRCAVGSSGDGLGG
Ga0308173_109226011	3300032074	Soil	PCAALLALYSCSMRAALSTDDDGHIVEVSSVRLESSLARVAVALVVGRQVAVELRWLAACDEPPCDKRGG
Ga0310896_108415022	3300032211	Soil	GAAGTLRCVHSTTSGALVRRTLVLVSCLCAMVLALYSCSMHASVTTDGEGHVVEISSVRVESSLARVAVAMLVAGGQVALELRWMRGLTAGSGADVGG
Ga0247829_116436261	3300033550	Soil	VRRIFVLVSCLCATVLALYSCSMHASVTTDGNGHIVEVSSLRVESSLARVAVAMLVAGGQVALELRWIRSLSATSDAVGG
Ga0370484_0052267_734_1015	3300034125	Untreated Peat Soil	VAGLLRCGTDDPGADVRRALILVSGLCAMAFALYSCSMHAAVTTDGDGRVVEVSSVRVESSLARVAVAMLVAGGEVALELRWSRCLTGSAGESL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084612

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences