Metagenome Family F084503

Overview

Basic Information

• Family ID: F084503
• Family Type: Metagenome
• Number of Sequences: 112
• Average Sequence Length: 42 residues
• Representative Sequence: HIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLPYVD
• Number of Associated Samples: 99
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 3.57 %
• % of genes near scaffold ends (potentially truncated): 94.64 %
• % of genes from short scaffolds (< 2000 bps): 95.54 %
• Associated GOLD sequencing projects: 98
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (96.429 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members)
• Environment Ontology (ENVO): Unclassified (23.214 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (44.643 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 32.84%
  β-sheet: 0.00%
  Coil/Unstructured: 67.16%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01575	MaoC_dehydratas	28.57
PF00106	adh_short	8.04
PF02515	CoA_transf_3	8.04
PF03401	TctC	4.46
PF13561	adh_short_C2	3.57
PF00857	Isochorismatase	1.79
PF12728	HTH_17	1.79
PF11730	DUF3297	1.79
PF01546	Peptidase_M20	1.79
PF13531	SBP_bac_11	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	8.04
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.46
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.79
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.79
COG0090	Ribosomal protein L2	Translation, ribosomal structure and biogenesis [J]	0.89
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.89
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.89
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.89
COG4928	Predicted P-loop ATPase, KAP-like	General function prediction only [R]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.43 %
Unclassified	root	N/A	3.57 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.43 %
Unclassified	root	N/A	3.57 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.43 %
Unclassified	root	N/A	3.57 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	91.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Unclassified	root	N/A	3.57 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.14 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.46 %
Unclassified	root	N/A	3.57 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.96 %
Unclassified	root	N/A	3.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	32.14 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.11 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.04 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	13.39 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.89 %
Unclassified	root	N/A	3.57 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.79 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.11 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.04 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	13.39 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.79 %
Promicromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae	0.89 %
Unclassified	root	N/A	3.57 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.89 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.11 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.04 %
Antribacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Antribacter	0.89 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	13.39 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.79 %
Unclassified	root	N/A	3.57 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.11 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.04 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	13.39 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.79 %
Unclassified	root	N/A	3.57 %
unclassified Antribacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Antribacter → unclassified Antribacter	0.89 %

Level 11

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.11 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.04 %
Antribacter sp. KLBMP9083	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Antribacter → unclassified Antribacter → Antribacter sp. KLBMP9083	0.89 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	13.39 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.79 %
Unclassified	root	N/A	3.57 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000597|AF_2010_repII_A1DRAFT_10074581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	856
3300000597|AF_2010_repII_A1DRAFT_10095673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	734
3300000816|AF_2010_repII_A10DRAFT_1020240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	703
3300002245|JGIcombinedJ26739_101075717	All Organisms → cellular organisms → Bacteria → Proteobacteria	691
3300004267|Ga0066396_10000394	All Organisms → cellular organisms → Bacteria → Proteobacteria	3149
3300004268|Ga0066398_10000958	All Organisms → cellular organisms → Bacteria → Proteobacteria	2456
3300004633|Ga0066395_10190978	All Organisms → cellular organisms → Bacteria → Proteobacteria	1066
3300004633|Ga0066395_10422158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	755
3300005165|Ga0066869_10047507	All Organisms → cellular organisms → Bacteria → Proteobacteria	746
3300005563|Ga0068855_100789544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1010

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.89%
Environmental	Environmental	76.79%
Host-Associated	Host-Associated	22.32%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.46%
Built Environment	Engineered → Built Environment	0.89%
Microbial	Host-Associated → Microbial	0.89%
Plants	Host-Associated → Plants	21.43%
Terrestrial	Environmental → Terrestrial	72.32%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.89%
Bacteria	Host-Associated → Microbial → Bacteria	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%
Freshwater	Environmental → Aquatic → Freshwater	1.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.82%
Roots	Host-Associated → Plants → Roots	1.79%
Sediment	Environmental → Aquatic → Sediment	2.68%
Soil	Environmental → Terrestrial → Soil	70.54%
Unclassified	Engineered → Built Environment → Unclassified	0.89%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.14%
Lake	Environmental → Aquatic → Freshwater → Lake	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.89%
Unclassified	Host-Associated → Microbial → Bacteria → Unclassified	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.89%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Microbial → Bacteria → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.89%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Drinking Water Pipes	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Micrasterias Crux-Melitensis (Mzch 98) Associated	Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100745813	3300000597	Forest Soil	RFKAAGCRRMTFRISTMGDXMAQFRRLVEDVLPYVD*
AF_2010_repII_A1DRAFT_100956731	3300000597	Forest Soil	MARRRECVEHIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD*
AF_2010_repII_A10DRAFT_10202402	3300000816	Forest Soil	ECVEHIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD*
JGIcombinedJ26739_1010757171	3300002245	Forest Soil	HIKLFKASGCRRITFRISTMGDPMAQLRRLVEDVLPYVD*
Ga0066396_100003942	3300004267	Tropical Forest Soil	MNFGITLSKQIKRYKARRVVGITFWISTMGDQMAQFRRVIEDVLPYLD*
Ga0066398_100009583	3300004268	Tropical Forest Soil	MNFGITLSKQIKRYKARRVVGRITFWISTMGDQMAQFRRVIEDVLPYLD*
Ga0066395_101909782	3300004633	Tropical Forest Soil	MNFGITLSKQIKRYKARRVVGRITFWISTIGDQMAQFRRVIEDVLPYLD*
Ga0066395_104221582	3300004633	Tropical Forest Soil	YGSPRECVEHIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0066869_100475071	3300005165	Soil	CVEHIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0068855_1007895441	3300005563	Corn Rhizosphere	GSPRDCIAQLKQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN*
Ga0068857_1007470841	3300005577	Corn Rhizosphere	HLRQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN*
Ga0068859_1022700322	3300005617	Switchgrass Rhizosphere	HLRQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVD*
Ga0066903_1060842191	3300005764	Tropical Forest Soil	LQRYAACGCRRITFRISTMGDPMAQFRRLAEEVLPFV*
Ga0066903_1083409721	3300005764	Tropical Forest Soil	CVEHIKRFKAAGCRRITFRISTMGDVMEQFRRLVEEVLPYID*
Ga0066903_1090348342	3300005764	Tropical Forest Soil	ECVEHIKRFKASGCRRITFRISTMRDPMAQFQRLVEDVLPYVD*
Ga0070765_1002758141	3300006176	Soil	ECVEHIKLFKASGCRRITFRISTMGDPMVQFRRLVEDVLPYVD*
Ga0075367_107271142	3300006178	Populus Endosphere	DCIEHLKQFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVD*
Ga0101947_10387942	3300006872	Drinking Water Pipes	EDLKKWKAAGCKRLTFRISTMGDPLKQLKRVAEEVLPFV*
Ga0068865_1001194361	3300006881	Miscanthus Rhizosphere	QFKASGCRRITFRISTMGDPMQQFRRVAEEVLPFVD*
Ga0075426_108225192	3300006903	Populus Rhizosphere	PRDCVEQIKRYKASGCRRITFRISTMGDQMAQFRRVIEDVLPYVD*
Ga0115930_10204971	3300008886	Micrasterias Crux-Melitensis (Mzch 98) Associated	HLRQFKNSGCNRVTFRISTMGDPMAVFRRAVEEVLPFV*
Ga0114129_120100412	3300009147	Populus Rhizosphere	FKASGCRRITFRISTMGDPMEQFRRLVEDVLAYVD*
Ga0105243_121609931	3300009148	Miscanthus Rhizosphere	TPRDCIEQLKRYKEAGCNRVTFRISTMGDPMAQLRRVTEEVLPFV*
Ga0126374_112394811	3300009792	Tropical Forest Soil	DCIAHLQQYKASGCRRITFRISTMGDPMAQLRRVTEEVLPFVN*
Ga0126370_102032041	3300010358	Tropical Forest Soil	AHLKRFKAAGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0126370_108598432	3300010358	Tropical Forest Soil	YGAPRDCIAQLRAFKSCGCRRITFRIATMGDPMTQLRRLAEEVLPFV*
Ga0126376_121696831	3300010359	Tropical Forest Soil	RDCIEHIRQFRACGCRRITFRISTMRDPLAQFRRLVEDVLPHVG*
Ga0126378_131817261	3300010361	Tropical Forest Soil	KASGCRRITFRISTMRDPMAQFQRLVEDVLPYVD*
Ga0126377_114071273	3300010362	Tropical Forest Soil	PRECVEHIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0126377_117757041	3300010362	Tropical Forest Soil	PRDCIAHLQRYAACGCRRITFRISTMGDAMAQLRRLVDEVLPYV*
Ga0126379_104864182	3300010366	Tropical Forest Soil	SPRDCIAHLKQYKASGCRRITFRISTMGDPMAQLRRVTEEVLPFVS*
Ga0134125_107811771	3300010371	Terrestrial Soil	CIEHLRQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN*
Ga0134128_126190861	3300010373	Terrestrial Soil	LFKASGCRRIIFRISTMGDPMEQFRRIAEEVLPFVV*
Ga0105239_107791852	3300010375	Corn Rhizosphere	LKQFKASGCRRITFRISTMGDPMEQFRRLAEEVLPFVD*
Ga0126381_1012601241	3300010376	Tropical Forest Soil	IKRFKAAGCRRITFRISTMGDVMEQFRRLVEDVLPYVD*
Ga0126383_126720371	3300010398	Tropical Forest Soil	HIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0134122_123185112	3300010400	Terrestrial Soil	QFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVE*
Ga0134121_103865401	3300010401	Terrestrial Soil	PRDCIEHLRQYKEAGCNRVTFRISTMGDPMAQLRRVTEEVLPFV*
Ga0124844_11017383	3300010868	Tropical Forest Soil	IRRFKASGCRRITFRISTMRDPMAQFQRLVEDVLPYVD*
Ga0124844_12723901	3300010868	Tropical Forest Soil	RFKVKASGCRRITFRISTMRDPMAQFQRLVEDVLPYVD*
Ga0138505_1000665541	3300010999	Soil	PRECIAHLKQFKASGCRRITFRISTMGDPIEQFRRVAEEVLPFVN*
Ga0137388_111626401	3300012189	Vadose Zone Soil	VQIEQLKASGCRRITFRISTMGDPMAQLRRVVDEVLPFVD*
Ga0137365_100910141	3300012201	Vadose Zone Soil	GSPRDCIAHLKRFKAAGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0137362_102791691	3300012205	Vadose Zone Soil	WLPYGSPRECVEHIKLFKASGCRRITFRISTMGDPMAQLRRLVEDVLPYVD*
Ga0137377_119505241	3300012211	Vadose Zone Soil	RFKAAGCRRITFRISTMGDPMAQFRRLVEDVLPYVD*
Ga0137384_107566122	3300012357	Vadose Zone Soil	FKASGCRRITFRISTMGDPMQQFRRVVEDVLPYVD*
Ga0150984_1225309551	3300012469	Avena Fatua Rhizosphere	DCIEHLRQFKASGCRRITFRISTMGDPMEQFRRLAEEVLPFVD*
Ga0157310_104628091	3300012916	Soil	YGSPRDCIEHLKRYKEAGCNRVTFRISTMGDPMAQLRRVTEEVLPFV*
Ga0164301_110121861	3300012960	Soil	ACIEHLKLFQAAGGRRLTFRIPTLGDPMEPFRRIAEEVLPFVV*
Ga0164302_104595511	3300012961	Soil	LKQFKASGCRRITFRISTMGDPMRQLRRVAEEVLPFVD*
Ga0164305_112014311	3300012989	Soil	YGSPRDCIEHLKRYKDAGCHRVTFRISTMGDPMAQLKRVTEEVLPFV*
Ga0157380_109217132	3300014326	Switchgrass Rhizosphere	QLKQFKASGSRRITFRISTMGDPMEQFRRLAEEVLPFVD*
Ga0157377_101399231	3300014745	Miscanthus Rhizosphere	RDCIAQLKQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN*
Ga0134072_104029111	3300015357	Grasslands Soil	GSPRECVEQIKGYKASGCRRITFRISTMGDQMAQFRRVIEDVLPYVD*
Ga0132257_1031652431	3300015373	Arabidopsis Rhizosphere	RDCIAHLQSFAASGCRRITFRISTMGDPMAQLRRLVEEVLPYV*
Ga0132255_1035064071	3300015374	Arabidopsis Rhizosphere	YGSPRDCIEHLKLFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVE*
Ga0132255_1057775132	3300015374	Arabidopsis Rhizosphere	FAASGCRRITFRISTMGDPMAQLRRLVEEVLPYV*
Ga0182036_101661253	3300016270	Soil	KRFKASGCRRITFRISTMGDPMAQFRRLVEDVLQYVD
Ga0182036_105335371	3300016270	Soil	HIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD
Ga0182037_103266723	3300016404	Soil	YGSPRECVEHIKRFKASGCRRITFRISTMGDPMAQLQRLVEDVLPYVD
Ga0163161_115214801	3300017792	Switchgrass Rhizosphere	HIKRFKASGCRRITFRISTMGDAMEQFRRLVEDVLPYVD
Ga0184617_10263742	3300018066	Groundwater Sediment	YGSPRDCIEHLKQFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVN
Ga0190269_111894881	3300018465	Soil	DCIEHLRQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN
Ga0066662_103537773	3300018468	Grasslands Soil	ECVEHIKGFKASGCRRITFRISTMGDPMEQFRRLVEDVLPYVD
Ga0173479_108433532	3300019362	Soil	KQFKASGCRRITFRISTMGDPMEQFRRLAEEVLPFVD
Ga0193704_10806771	3300019867	Soil	AHLKQFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVN
Ga0210379_104286882	3300021081	Groundwater Sediment	IAQLAQFKASGCRRITFRISTMGDPMAQLRRVVEEVLPGVR
Ga0126371_137889482	3300021560	Tropical Forest Soil	FKAAGCRRITFRISTMGDPMAQFRRLVEDVLPYVD
Ga0222622_104328431	3300022756	Groundwater Sediment	PRDCIAQLKQFKASGCRRITFRISTMRDPMTQFRRVVDEVLPFV
Ga0207688_102221381	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	KQFKASGCRRITFRISTMGDPMRQLRRVAEEVLPFVD
Ga0207693_107545872	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VCFAARRDADRDCVAQLQQFKASGCRRITFRISTMRDPIAQLRRVVEEVLPFV
Ga0207681_116062452	3300025923	Switchgrass Rhizosphere	SPRDCIEHLKQFKASGCRRITFRISTMGDPMRQLRRVAEEVLPFVD
Ga0207659_112968651	3300025926	Miscanthus Rhizosphere	DCIVHLRRFKESGCNRVTFRISTMGDPMAQLRRVAEEVLPFV
Ga0207701_105623322	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DCIEQLKRYKEVGCNRVTFRISTMGDPMAQLRRVTEEVLPFV
Ga0207679_106640152	3300025945	Corn Rhizosphere	CIAQLKQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN
Ga0207668_110523611	3300025972	Switchgrass Rhizosphere	RDCIAQLKQFKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN
Ga0207677_109122082	3300026023	Miscanthus Rhizosphere	KQFKASGCRRITFRISTMGDPMQQFRRVAEEVLPFVD
Ga0207675_1018597111	3300026118	Switchgrass Rhizosphere	SPRDCIEHLKRFKAHGCRRVTFRISTMADPLQQLRRVVEEVLPFV
Ga0209234_11812673	3300026295	Grasslands Soil	HLKRFKAAGCRRITFRISTMGDPMAQFRRLVEDVLPYVD
Ga0209802_13180181	3300026328	Soil	RECVEHIKRFKASGCRRITFRISTMGDPMAQLRRLVEDVLPYVD
Ga0209418_10752162	3300027371	Forest Soil	LKASGCRRITFRISTMGDAMEQFRRLVEDVLPYVD
Ga0209813_103946822	3300027866	Populus Endosphere	FKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVD
Ga0209465_102460423	3300027874	Tropical Forest Soil	KRFKASGCRRITFRISTMRDPMAQFQRLVEDVLPYVD
Ga0209069_107591471	3300027915	Watersheds	IAHLRQFKACGCRRITFRISTMGDPMAQLRRVTEEVLPFV
Ga0247822_111838162	3300028592	Soil	FKASGCRRITFRISTMGDPMEQFRRVTQEVLPFVN
Ga0307316_103716961	3300028755	Soil	IAQLKEFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVN
Ga0307299_100835151	3300028793	Soil	AHLKEFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVN
Ga0307299_102558701	3300028793	Soil	SWLTYGPPRDCIAQLKQFKASGCRRITFRISTMRDPMTQFRRVVDEVLPFV
Ga0307304_105749351	3300028885	Soil	TYGSPRECIAHLKQFKASGCRRITFRISTMGDPMEQFRRVAEEVLPFVN
Ga0318528_100601674	3300031561	Soil	HIKRFKASGCRRIIFRISTMGDPMAQFQRLVEDVLPYVD
Ga0310813_110883212	3300031716	Soil	EHLRRYKAAGCNRVTFRISTMGDPMAQLKRVTDEVLPFV
Ga0310813_111401391	3300031716	Soil	YGSPRDCIEHLKQFKASGCRRITFRISTMGDPMRQLRRVAEEVLPFVD
Ga0318493_102412151	3300031723	Soil	IKRFKASGCRRITFRISTMRDPMAQFQRLVEDVLPYVD
Ga0318494_102392243	3300031751	Soil	TYGSPRECVEHIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318535_100417004	3300031764	Soil	GSPRECVEHIKRFKASGCRRIIFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318547_101777321	3300031781	Soil	CVEHIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318552_100597321	3300031782	Soil	ECVEHIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318529_101174363	3300031792	Soil	IKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318548_102582841	3300031793	Soil	YGSPRECVEHIKRFKASGCRRITFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318499_102929052	3300031832	Soil	RFKAAGCRRITFRISTMGDPIVQFQRLVEDVLPYVD
Ga0315290_113097842	3300031834	Sediment	YGSPRNCIEHLKQFKASGCRRVTFRISTMGDPMAQLRRVVEEVLPFV
Ga0310907_105998442	3300031847	Soil	CIEHLKRFKAHGCRRITFRISTMADPLRQLRRVVEEVLPFV
Ga0306925_102750321	3300031890	Soil	EHIKRFKASGCRRIIFRISTMGDPMAQFQRLVEDVLPYVD
Ga0310916_100228551	3300031942	Soil	ECVEHIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLQYVD
Ga0310916_113353662	3300031942	Soil	HIKRFKASGCRRITFRISTMGDPMAQFRRLVEDVLPYVD
Ga0214473_118440091	3300031949	Soil	GSPRDCIEHIERFKASGCRRITFRISTMRDPMAQFRRLVEDVLPYVE
Ga0318506_100525484	3300032052	Soil	AWLIHGSPRECVEHIKRFKASGCRRIIFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318570_101468161	3300032054	Soil	WLTHGSPRECVEHIKRFKASGCRRIIFRISTMGDPMAQFQRLVEDVLPYVD
Ga0318570_105430042	3300032054	Soil	RRFKAAGCRRITFRISTMGDPIVQFQRLVEDVLPYVD
Ga0310890_100930221	3300032075	Soil	LKTYKASGCRRVTFRISTMGDPMAQLRRVTEEVLPFV
Ga0247829_100719611	3300033550	Soil	HLKRYKAHGCRRVTFRISTMGDPMTQLRRVTEEVLPFV
Ga0364943_0262659_506_646	3300034354	Sediment	GSPRDCIEHLKRFKAHGCRRITFRISTMADPLRQLRRVVEEVLPFV