Metagenome / Metatranscriptome Family F084448

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084448
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	107 residues
Representative Sequence	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGSARQEADPETRSRVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGGRPRRRRHHGTTTRLELRR
Number of Associated Samples	81
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.25 %
% of genes near scaffold ends (potentially truncated)	28.57 %
% of genes from short scaffolds (< 2000 bps)	67.86 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.607 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (19.643 % of family members)
Environment Ontology (ENVO)	Unclassified (26.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.036 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.64% β-sheet: 0.00% Coil/Unstructured: 75.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04744	Monooxygenase_B	31.25
PF09339	HTH_IclR	19.64
PF02461	AMO	2.68
PF01522	Polysacc_deac_1	0.89
PF04896	AmoC	0.89
PF03450	CO_deh_flav_C	0.89
PF05977	MFS_3	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.89
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
All Organisms	root	All Organisms	38.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
cellular organisms	root	All Organisms → cellular organisms	38.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	6.25 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.57 %
Carbonactinosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	3.57 %
Carbonactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.61 %
Nocardioidaceae bacterium Broad-1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	3.57 %
Carbonactinospora thermoautotrophica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_11050738	Not Available	699	Open in IMG/M
3300000559\|F14TC_101368465	Not Available	555	Open in IMG/M
3300000787\|JGI11643J11755_11475933	Not Available	675	Open in IMG/M
3300000956\|JGI10216J12902_110505435	Not Available	573	Open in IMG/M
3300001431\|F14TB_100399777	Not Available	671	Open in IMG/M
3300003203\|JGI25406J46586_10015059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	3270	Open in IMG/M
3300003203\|JGI25406J46586_10050173	Not Available	1403	Open in IMG/M
3300003203\|JGI25406J46586_10178141	Not Available	620	Open in IMG/M
3300005562\|Ga0058697_10016356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2538	Open in IMG/M
3300005562\|Ga0058697_10254688	Not Available	819	Open in IMG/M
3300005719\|Ga0068861_101013050	Not Available	793	Open in IMG/M
3300005937\|Ga0081455_10033783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	4591	Open in IMG/M
3300005937\|Ga0081455_10717458	Not Available	635	Open in IMG/M
3300005983\|Ga0081540_1010734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	6169	Open in IMG/M
3300005985\|Ga0081539_10038388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2839	Open in IMG/M
3300005985\|Ga0081539_10043218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2615	Open in IMG/M
3300005985\|Ga0081539_10093919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1544	Open in IMG/M
3300005985\|Ga0081539_10113502	Not Available	1359	Open in IMG/M
3300006049\|Ga0075417_10001162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6991	Open in IMG/M
3300006194\|Ga0075427_10003248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2231	Open in IMG/M
3300006844\|Ga0075428_100147484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2557	Open in IMG/M
3300006844\|Ga0075428_101397522	Not Available	735	Open in IMG/M
3300006845\|Ga0075421_100289948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1993	Open in IMG/M
3300006847\|Ga0075431_100036491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	5062	Open in IMG/M
3300006904\|Ga0075424_102004469	Not Available	611	Open in IMG/M
3300007790\|Ga0105679_10994981	Not Available	1797	Open in IMG/M
3300009100\|Ga0075418_11102432	Not Available	860	Open in IMG/M
3300009147\|Ga0114129_10159860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3079	Open in IMG/M
3300009789\|Ga0126307_10024897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4560	Open in IMG/M
3300009789\|Ga0126307_10053056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3167	Open in IMG/M
3300009789\|Ga0126307_11194765	Not Available	616	Open in IMG/M
3300009789\|Ga0126307_11238392	Not Available	604	Open in IMG/M
3300009840\|Ga0126313_10012872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5362	Open in IMG/M
3300009840\|Ga0126313_10212278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1490	Open in IMG/M
3300010036\|Ga0126305_10006909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5522	Open in IMG/M
3300010036\|Ga0126305_10912627	Not Available	600	Open in IMG/M
3300010037\|Ga0126304_10564325	Not Available	766	Open in IMG/M
3300010038\|Ga0126315_11112753	Not Available	534	Open in IMG/M
3300010040\|Ga0126308_10156396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1443	Open in IMG/M
3300010041\|Ga0126312_10091458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2072	Open in IMG/M
3300010041\|Ga0126312_10617945	Not Available	780	Open in IMG/M
3300010042\|Ga0126314_10002842	All Organisms → cellular organisms → Bacteria	8745	Open in IMG/M
3300010042\|Ga0126314_10799663	Not Available	694	Open in IMG/M
3300010045\|Ga0126311_10005483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6743	Open in IMG/M
3300010145\|Ga0126321_1161419	Not Available	551	Open in IMG/M
3300010145\|Ga0126321_1470867	Not Available	1017	Open in IMG/M
3300010166\|Ga0126306_10187588	Not Available	1556	Open in IMG/M
3300010999\|Ga0138505_100001859	Not Available	1868	Open in IMG/M
3300014487\|Ga0182000_10144987	Not Available	853	Open in IMG/M
3300014487\|Ga0182000_10173154	Not Available	803	Open in IMG/M
3300014488\|Ga0182001_10090248	Not Available	927	Open in IMG/M
3300018000\|Ga0184604_10161003	Not Available	747	Open in IMG/M
3300018027\|Ga0184605_10296241	Not Available	733	Open in IMG/M
3300018028\|Ga0184608_10011897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2986	Open in IMG/M
3300018051\|Ga0184620_10059367	Not Available	1099	Open in IMG/M
3300018054\|Ga0184621_10049317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1401	Open in IMG/M
3300018073\|Ga0184624_10190777	Not Available	912	Open in IMG/M
3300018466\|Ga0190268_10145052	Not Available	1201	Open in IMG/M
3300018466\|Ga0190268_10632825	Not Available	767	Open in IMG/M
3300019254\|Ga0184641_1473045	Not Available	806	Open in IMG/M
3300019269\|Ga0184644_1322185	Not Available	3020	Open in IMG/M
3300021073\|Ga0210378_10008386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4497	Open in IMG/M
3300021078\|Ga0210381_10186576	Not Available	718	Open in IMG/M
3300025961\|Ga0207712_10494705	Not Available	1044	Open in IMG/M
3300027750\|Ga0209461_10128102	Not Available	600	Open in IMG/M
3300027873\|Ga0209814_10003593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Carbonactinosporaceae → Carbonactinospora → Carbonactinospora thermoautotrophica	5792	Open in IMG/M
3300027907\|Ga0207428_10001624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23341	Open in IMG/M
3300028589\|Ga0247818_10088368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2000	Open in IMG/M
3300028705\|Ga0307276_10101806	Not Available	695	Open in IMG/M
3300028716\|Ga0307311_10015013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1882	Open in IMG/M
3300028717\|Ga0307298_10076049	Not Available	938	Open in IMG/M
3300028720\|Ga0307317_10012591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2529	Open in IMG/M
3300028722\|Ga0307319_10060369	Not Available	1195	Open in IMG/M
3300028755\|Ga0307316_10007425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3389	Open in IMG/M
3300028787\|Ga0307323_10001513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7384	Open in IMG/M
3300028793\|Ga0307299_10085765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1172	Open in IMG/M
3300028812\|Ga0247825_10035804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3285	Open in IMG/M
3300028828\|Ga0307312_10506247	Not Available	797	Open in IMG/M
3300028881\|Ga0307277_10086954	Not Available	1314	Open in IMG/M
3300028889\|Ga0247827_10021913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2663	Open in IMG/M
3300030499\|Ga0268259_10120485	Not Available	603	Open in IMG/M
3300030516\|Ga0268255_10047633	Not Available	1390	Open in IMG/M
3300031548\|Ga0307408_100009067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6567	Open in IMG/M
3300031548\|Ga0307408_100022088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4318	Open in IMG/M
3300031548\|Ga0307408_100357461	Not Available	1241	Open in IMG/M
3300031548\|Ga0307408_100394715	Not Available	1186	Open in IMG/M
3300031731\|Ga0307405_10589721	Not Available	905	Open in IMG/M
3300031731\|Ga0307405_11399642	Not Available	611	Open in IMG/M
3300031852\|Ga0307410_10241789	Not Available	1399	Open in IMG/M
3300031901\|Ga0307406_10410420	Not Available	1076	Open in IMG/M
3300031903\|Ga0307407_11625124	Not Available	513	Open in IMG/M
3300031911\|Ga0307412_10044117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2908	Open in IMG/M
3300031911\|Ga0307412_10278749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1311	Open in IMG/M
3300031911\|Ga0307412_10510576	Not Available	1002	Open in IMG/M
3300031911\|Ga0307412_10651995	Not Available	898	Open in IMG/M
3300031911\|Ga0307412_11507711	Not Available	611	Open in IMG/M
3300031995\|Ga0307409_100112833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2283	Open in IMG/M
3300031995\|Ga0307409_100144886	Not Available	2052	Open in IMG/M
3300031995\|Ga0307409_102122218	Not Available	591	Open in IMG/M
3300032002\|Ga0307416_100274671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1657	Open in IMG/M
3300032005\|Ga0307411_10391167	Not Available	1146	Open in IMG/M
3300032005\|Ga0307411_12101853	Not Available	528	Open in IMG/M
3300032080\|Ga0326721_10194766	Not Available	1065	Open in IMG/M
3300032126\|Ga0307415_100513212	Not Available	1050	Open in IMG/M
3300032126\|Ga0307415_100801904	Not Available	860	Open in IMG/M
3300032159\|Ga0268251_10358961	Not Available	620	Open in IMG/M
3300033551\|Ga0247830_10134620	Not Available	1787	Open in IMG/M
3300034131\|Ga0334911_022711	Not Available	868	Open in IMG/M
3300034137\|Ga0334943_074811	Not Available	646	Open in IMG/M
3300034172\|Ga0334913_001418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9052	Open in IMG/M
3300034174\|Ga0334932_003952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2366	Open in IMG/M
3300034174\|Ga0334932_036564	Not Available	834	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.46%
Host-Associated	Host-Associated	45.54%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	45.54%
Terrestrial	Environmental → Terrestrial	43.75%
Aquatic	Environmental → Aquatic	10.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.82%
Freshwater	Environmental → Aquatic → Freshwater	5.36%
Sediment	Environmental → Aquatic → Sediment	5.36%
Phylloplane	Host-Associated → Plants → Phylloplane	3.57%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.79%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	30.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.57%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	3.57%
Loam	Environmental → Terrestrial → Soil → Loam	2.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.79%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.79%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.89%
Sand	Environmental → Terrestrial → Soil → Sand	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	30.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.57%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	3.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.57%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	3.57%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.89%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	19.64%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	8.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.36%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.57%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.57%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.68%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.79%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.79%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.89%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.89%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034137	Biocrust microbial communities from Mojave Desert, California, United States - 39SMC	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_110507381	3300000550	Soil	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGSARQEADPETRSRVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGGRPRRRRHHGTTTRLELRR*
F14TC_1013684651	3300000559	Soil	MSNLADGLFPKYLSFLILLPFLLMGFGLWFICRAFTDKGSARQEADPETRSRVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGGRPRRRRHHGTTTRLELRR*
JGI11643J11755_114759333	3300000787	Soil	MSNLADGLFPKYLSFLILLPFLMMGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAKGDEPERGPPGGRPRR
JGI10216J12902_1105054351	3300000956	Soil	MSNLADGLFPKYLSFLILLPFLMMGFGLWFICRAFTDKGDARQSDPEAGAQVVTLPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPP
F14TB_1003997771	3300001431	Soil	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGSARQEADPETRSRVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGGRPRRRRHHGTTTRLELRR
JGI25406J46586_100150592	3300003203	Tabebuia Heterophylla Rhizosphere	MSNFADGLFPEWLSFVMLLPFLMLGFGLLFISRAFTDKGDARQEAEAQDQDQSRVVVALPDRTQQPLYRVHQQIQASARPPPKAEPDEPTRASGGRPRRRRHHGTTTRLELRR*
JGI25406J46586_100501733	3300003203	Tabebuia Heterophylla Rhizosphere	MSNFALGLFPGWLSFVMLLPFIMMIFGLWFICRAFTDRGGARQEAEPEDQSRRVVVSLPDRSQQPLYRVHQQIQASARPPPKAQQPDEPARASGGRPRRRRHHGTTTRLELRR*
JGI25406J46586_101781411	3300003203	Tabebuia Heterophylla Rhizosphere	MSNFADGLFPGWLSFVMLLPFVMLGFGLWFICRAFSDRGGARQEAEPEDRSKVVALPDRTQQPLYRVHQQIQASARPPAKAQPDEPGRAP
Ga0058697_100163563	3300005562	Agave	MSNLAGGLFPKYLSFLMLLPFLMMGFGLWFICRAFRDKGDARQSDPEAWSQVSVLPDRSQRPLYHVHQQIQASARPPPKAQPDEPKRGPGGRPRRRRHHSTTRLELRK*
Ga0058697_102546883	3300005562	Agave	MSNFADGLFPKYLSFLMLLPFLMMGFGLWFICRAFSDRGDARQSEADPEVRARVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRCVRSGRATTRARTS
Ga0068861_1010130501	3300005719	Switchgrass Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRTQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRRPPRRHRSNTRLELHQ*
Ga0081455_100337836	3300005937	Tabebuia Heterophylla Rhizosphere	MSNFATGVLPNWASFLILLPFIMLGFGLWFICRAFTDKGDARQPDPQTESRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGPGGGNGRRPRRHHGTTRLELRQ*
Ga0081455_107174582	3300005937	Tabebuia Heterophylla Rhizosphere	MSNFALGLVPGWLSFVMLLPFLMMVFGLWFICRAFTDRGGARQEAEPEDQARRVVVNLPDRAQQPLYRVHQQIQASARPPPKDQPDEPARASGGRPRRRRHHGSTTRLELRR*
Ga0081540_10107345	3300005983	Tabebuia Heterophylla Rhizosphere	MSNFALGLFPGWLSFVMLLPFLMMVFGLWFICRAFTDRGGARQDAEPEDQARRVVVALPDRAQQPLYRVHQQIQASARPPPKDQPDEPARASGGRPRRRRHHGSTTRLELRR*
Ga0081539_100383883	3300005985	Tabebuia Heterophylla Rhizosphere	MSNFADGLFPSWLSFVMLLPFLMLAFGLLFICRAFTDRGGARQEPEPEDERSRVVVPLPDRTQQPLYRVHQQIQASARPPPKSEPDEPAGTSGGRPRRRRHHGTTTRLELRR*
Ga0081539_100432183	3300005985	Tabebuia Heterophylla Rhizosphere	MSNLANGLFPKYLSFLILLPFVMMGFGLWFICRAFTDKGDARQSDPEAGAQVVTLPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHSTTHLELRQ*
Ga0081539_100939191	3300005985	Tabebuia Heterophylla Rhizosphere	MSNLADGLFPGWLSFVMLLPFLMMAVGLWFICRAFSDKGDARQEAEPGDDRSRVVVALPDRAQQPLYRVHQQIQASARPPPKDAPDEPARPSGGRPRRRRHHGTTTRLELRR*
Ga0081539_101135022	3300005985	Tabebuia Heterophylla Rhizosphere	MSNFADGLFPGWLSFVMLLPFVMLGFGLWFICRAFSDRGGARQEAEPEDRSKVVALPDRTQQPLYRVHQQIQASARPPAKAQPDEPGRAPGGRPRRRRHNGTTTRLELRR*
Ga0075417_100011627	3300006049	Populus Rhizosphere	MSNFAGGLFPEWASFLIFLPFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHGTTHLELRQ*
Ga0075427_100032484	3300006194	Populus Rhizosphere	MSNFAGGLFPEWASFLIFLPFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGR
Ga0075428_1001474841	3300006844	Populus Rhizosphere	MSNFAGGLFPEWASFLIFLPFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRR
Ga0075428_1013975222	3300006844	Populus Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGRGGRRPPRRHRSNTRLELHQ*
Ga0075421_1002899484	3300006845	Populus Rhizosphere	PFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRRRHHGTTHLELRQ*
Ga0075431_1000364914	3300006847	Populus Rhizosphere	MSNFAGGLFPEWASFLIFLPFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRRRHHGTTHLELRQ*
Ga0075424_1020044691	3300006904	Populus Rhizosphere	MSNFATGVLPTWASFLILLPFIMLGFGLWFICRAFTDRGGDARQPDPETESRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGPGGGSRRRPRRHHGTTRLELRQ*
Ga0105679_109949813	3300007790	Soil	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDRGGARQETEAQDPARVVVSLPDRTQQPLYRVHQQIQASARPPAKAQPDEPGRAAGARPRRRRHHGTTTRLELRR*
Ga0075418_111024322	3300009100	Populus Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTESRVVALPDRTQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRRPPQRRHRSNTRLELHQ*
Ga0114129_101598603	3300009147	Populus Rhizosphere	MSNFATGVLPTWASFLILLPFIMLGFGLWFICRAFTDTGGDARQPDPETESRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGPGGGSRRRPRRHHGTTRLELRQ*
Ga0126307_100248977	3300009789	Serpentine Soil	MSNFADGLFPEWLSFVMLLPFLMLGFGLWFICRAFSDKGGARQEADPETRARVVSLPDRTQQPLYRVHQQIQASARPPAKAQPDEPGRAPGGRPRRRRHPGTTTRLELRR*
Ga0126307_100530565	3300009789	Serpentine Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDNGDARPADPDTQSRVVALPDRTQRPLYHVHQLIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ*
Ga0126307_111947652	3300009789	Serpentine Soil	MSNFADGLFPKYLTFLMLLPFLMMGFGLWFICRAFSDKGDARQSEPDPEARGRVVALPDRAQRPLYHVHQQIQASARPPPKAEPDEPERAPGGRPRRRRHHSTTRLELRQ*
Ga0126307_112383922	3300009789	Serpentine Soil	MSNFADGLFPGWLSFVMLLPFIMLGFGLWFICRAFSDKGDARQEVEPQDRSGVVVALPDRAQQPLYRVYQQIQASARPPPKAEPDEPARASGGRPRRRRHHGTTTRLELRR*
Ga0126313_100128727	3300009840	Serpentine Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ*
Ga0126313_102122782	3300009840	Serpentine Soil	MSNFADGLFPGWLSFVMLLPFLMMAFGLWFICRAFTDRGGARQEAEPQDRSRVVVSLPDRAQQPLYRVHQQIQASARPPAKAQPDEPARASAGRSRRRRHHGTTTRLELRR*
Ga0126305_100069095	3300010036	Serpentine Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDALPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ*
Ga0126305_109126273	3300010036	Serpentine Soil	FPEWLSFVMLLPFLMLGFGLWFICRAFSDKGGARQEADPETRARVVSLPDRTQQPLYRVHQQIQASARPPAKAQPDEPGRAPGGRPRRRRHPGTTTRLELRR*
Ga0126304_105643253	3300010037	Serpentine Soil	MSNLADGLFPGWLSFVMLLPFLMLGFGLWFICRAFSDRGGVRQEAESHDRSGGVVSLPDRAQQPLYRVHQQIQASARPPPKAEPDEPARASGGRPRRRRHHGTTTRLELRR*
Ga0126315_111127531	3300010038	Serpentine Soil	MSNFADGLFPKYLTFLMLLPFLMMGFGLWFICRAFSDKGDARQSEADPEVRGRVVALPDRAQRPLYRVHQQIQASARPPPKAQPDEPERAPGGRSRRRRDHSTTRLELRQ*
Ga0126308_101563961	3300010040	Serpentine Soil	MSNFADGLFPKYLTFLMLLPFLMMGFGLWFICRAFSDKGDARQSEADPEVRGRVVALPDRAQRPLYRVHQQIQASARPPPKAQPDEPERAP
Ga0126312_100914584	3300010041	Serpentine Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPEEPERGPGGRRLPRRHRSNTRLELHQ*
Ga0126312_106179453	3300010041	Serpentine Soil	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARQEADPQDRARVVPLPDRTQQPLYHVHQQIQASARPPPKAQPDEPARAPGGRTRRRRHHGTTTRLELRR*
Ga0126314_100028423	3300010042	Serpentine Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRLPRRHRSNTRLELHQ*
Ga0126314_107996633	3300010042	Serpentine Soil	MSNFADGLFPGWLSFVMLLPFLMMAFGLWFICRAFTDRGGARQEAEPQDRSRVVVSLPDRAQQPLYRVHQQIQASARPPAKAQPDEPARAPGARPRRRRHHGTTTRLELRR*
Ga0126311_100054838	3300010045	Serpentine Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDALPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRLPRRHRSNTRLELHQ*
Ga0126321_11614191	3300010145	Soil	MSNFADGLFPGWLSFVMLLPFLMLAFGLWFICRAFTDRGGARQEPEPHEDGSRVVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPERASGGRPRRRRHHGTTTRLELRR*
Ga0126321_14708673	3300010145	Soil	MSNFADGLFPKYLTFLMLLPFLMMGFGLWFICRAFSDRGDARQSEPDPETRARVVVLPDRTQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRPRRRRQHS
Ga0126306_101875883	3300010166	Serpentine Soil	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFSDKGGARQEADPQDDRSRVVVSLPDRAQQPLYRVHQQIQASARPPPKAEPDEPARASGGRPRRRRHHGTTTRLELRR*
Ga0138505_1000018593	3300010999	Soil	MSNFADGLFPEYLTFLMLLPFLMMGFGLWFICRAFSDRGDARPSDPDPEDRSRVVALPDRAQRPLYHVHQQIQASARPPPKAEPDEPERAPGGRPRRRRHHSTTRLELRQ*
Ga0182000_101449872	3300014487	Soil	MSNFADGLFPGWLSFVMLLPFLMLAFGLWFICRAFTDRGGARQEPEPEDRSRVVVALPDRTQQPLYRVHQQIQASARPPPKDQPDEPARASGGRPRRRRHHGTTTRLELRR*
Ga0182000_101731542	3300014487	Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDVRQADPDTQSRVVALPDRTQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRPRRRRHHGAPRLELRR*
Ga0182001_100902483	3300014488	Soil	MSNFALGLVPGWLSFVMLLPFLMMVFGLWFICRAFTDRGDARQEPEPEDRSQRVVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGSSGRPRRRRHHGTTTRLELRR*
Ga0184604_101610033	3300018000	Groundwater Sediment	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTDLELRQ
Ga0184605_102962413	3300018027	Groundwater Sediment	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPQRQRGHQ
Ga0184608_100118974	3300018028	Groundwater Sediment	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ
Ga0184620_100593673	3300018051	Groundwater Sediment	MSNFAAGLLPGWASFLNFLPFIMLGFGLWFICRAFTDRGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNSSAT
Ga0184621_100493174	3300018054	Groundwater Sediment	LPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRTQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRRPPRRHRSNTRLELHQ
Ga0184624_101907771	3300018073	Groundwater Sediment	LIFLPFIMLGFGLWFICRAFTDRGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0190268_101450523	3300018466	Soil	MSNFADGLFPEYLTFLMLLPFLMMGFGLWFICRAFSDKGDARQSEPDPEARARVVALPDRAQRPLYHVHQQIQASARPPPKAELDEPERGPGGRPRRRRQHSTTRLELRQ
Ga0190268_106328253	3300018466	Soil	TEMSNFADGLFPGWLSFVMLLPFLMMVFGLWFICRAFSDKGGARQEADPETRARVVPLPDRTQQPLYRVHQQIQASARPPPKAEPDEPARASGGRPRRRRHHGTTTRLELRR
Ga0184641_14730452	3300019254	Groundwater Sediment	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0184644_13221855	3300019269	Groundwater Sediment	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERG
Ga0210378_100083864	3300021073	Groundwater Sediment	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ
Ga0210381_101865762	3300021078	Groundwater Sediment	MSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0207712_104947053	3300025961	Switchgrass Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRTQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRRPPRRHRSNTRLELHQ
Ga0209461_101281021	3300027750	Agave	MSNFAGGLFPKYLSFLMLLPFLMMGFGLWFICRAFRDKGDARQSDPEAWSQVSVLPDRSQRPLYHVHQQIQASARPPPKAQPDEPKRGPAGR
Ga0209814_100035936	3300027873	Populus Rhizosphere	MSNFAGGLFPEWASFLIFLPFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRRRHHGTTHLELRQ
Ga0207428_1000162417	3300027907	Populus Rhizosphere	MSNFAGGLFPEWASFLIFLPFIMAGFGLWFICRAFTDKGDARQSDPEARAQVVALPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHGTTHLELRQ
Ga0247818_100883684	3300028589	Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGRGGRRPPRRHRSNTRLELHQ
Ga0307276_101018063	3300028705	Soil	PGWLSFVMLLPFLMLAVGLFFICRAFTDRGDARQEAEPEDRSRVVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASDGRPRRRRHHGTTTRLELRR
Ga0307311_100150134	3300028716	Soil	EMSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0307298_100760493	3300028717	Soil	MSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYRVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0307317_100125915	3300028720	Soil	FLQFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0307319_100603692	3300028722	Soil	MSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEAQAQAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0307316_100074254	3300028755	Soil	MSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDRGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ
Ga0307323_100015131	3300028787	Soil	MSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVALPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPPGGRPRRRRHHNTTHLELRQ
Ga0307299_100857651	3300028793	Soil	MSNFAAGLFPSWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPP
Ga0247825_100358045	3300028812	Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGPGGRRPPRRHRSNTRLELHQ
Ga0307312_105062471	3300028828	Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGVARQSDPEARAQVVVLPDRSQRPLYHVHQQIQASARPPPKAQGDEPERGPP
Ga0307277_100869543	3300028881	Soil	MSNFADGLFPGWLSFVMLLPFLMLAVGLFFICRAFTDRGDARQEAEPEDRSRVVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASDGRPRRRRHHGTTTRLELRR
Ga0247827_100219135	3300028889	Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDAGQADPDTQSRVVALPDRSQRPLYRVHQQIQASARPPPKAEPDEPERGRGGRRPPRRHRSNTRLELHQ
Ga0268259_101204851	3300030499	Agave	MSNLAGGLFPKYLSFLMLLPFLMMGFGLWFICRAFRDKGDARQSDPEAWSQVSVLPDRSQRPLYHVHQQIQASARPPPKAQPDEPKRGPAGRP
Ga0268255_100476334	3300030516	Agave	MSNFADGLFPKYLSFLMLLPFLMMGFGLWFICRAFSDKGDARQSEADPEVRARVVALPDRAQRPLYHVHQQIQASARPPPKAQPDEPERGPGGHRRRRRHHSTTRLELRQ
Ga0307408_1000090673	3300031548	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLAFGLWFICRAFTDRGGARQEPEPHEDGSRVVVPLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGGRPRRRRHHGTTTRLELRR
Ga0307408_1000220888	3300031548	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARQEADPQDRARVVPLPDRTQQPLYHVHQQIQASARPPPKAQPDEPARAPGGRPRRRRHHGTTTRLELRR
Ga0307408_1003574613	3300031548	Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRLPRRHRSNTRLELHQ
Ga0307408_1003947151	3300031548	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARREAEPQDRAKVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGARPRRRRHHGTTTRLELRR
Ga0307405_105897213	3300031731	Rhizosphere	FPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARQEADPQDRARVVPLPDRTQQPLYHVHQQIQASARPPPKAQPDEPARAPGGRPRRRRHHGTTTRLELRR
Ga0307405_113996421	3300031731	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARREAEPQDRAKVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARAS
Ga0307410_102417893	3300031852	Rhizosphere	MSNFADGLFPGWLSFVMLLPFIMLGIGLWFICRAFSDKGGARQEAEPQDRSGVVVALPDRAQQPLYRVHQQIQASARPPPKAEPDEPARASGGRPRRRRHHGTTTRLELRR
Ga0307406_104104203	3300031901	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARQEADPQDRARVVPLPDRTQQPLYHVHQQIQASARPPPKAQPDEPARAPGGRTRRRRHHGTTTRL
Ga0307407_116251241	3300031903	Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQLIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLERHQ
Ga0307412_100441174	3300031911	Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDNGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRLPRRHRSNTRLELHQ
Ga0307412_102787491	3300031911	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLAFGLWFICRAFTDRGGARQEPEPHEDGSRVVVPLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGGRPRRRRHHGTT
Ga0307412_105105763	3300031911	Rhizosphere	NFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARREAEPQDRAKVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPARASGARPRRRRHHGTTTRLELRR
Ga0307412_106519953	3300031911	Rhizosphere	MSNFADGLFPKYLTFLMLLPFLMMGFGLWFICRAFSDKGDARQSEPDPEARGRVVALPDRAQRPLYHVHQQIQASARPPPKAEPDEPERAPGGRPRRRRHHSTTRLELRQ
Ga0307412_115077112	3300031911	Rhizosphere	MSNFADGLVPGWLSFVMLLPFLMMAFGLWFICRAFTDRGGARQEAEPQDRSRVVVSLPDRTQQPLYRVHQQIQASARPPAKAQPDEPARASAGRSRRRRHHGTTTRLELRR
Ga0307409_1001128333	3300031995	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFSDKGGARQEADPETRARVVPLPDRTQQPLYRVHQQIQASARPPAKAQPDEPGRASGGRPRRRRHPGTTTRLELRR
Ga0307409_1001448863	3300031995	Rhizosphere	MSNFADGLFPGWLSFVMLLPFIMLGFGLWFICRAFSDKGDARQEVEPQDRSGVVVALPDRAQQPLYRVHQQIQASARPPPKAEPDEPARASGGRPRRRRHHGTTTRLELRR
Ga0307409_1021222182	3300031995	Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTQSRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLERHQ
Ga0307416_1002746711	3300032002	Rhizosphere	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDKGGARQEADPQDRARVVPLPDRTQQPLYHVHQQIQASARPPPKAQPDEPARAPGGRTRRRRHHGTTTRLELRR
Ga0307411_103911673	3300032005	Rhizosphere	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDKGDARPADPDTHCRVVALPDRTQRPLYHVHQQIQASARPPPKAEPDEPERGPGGRRRLPRRHHSNTRLELHQ
Ga0307411_121018532	3300032005	Rhizosphere	MSNFADGLFPKYLSFLMLLPFLMMGFGLWFICRAFSDKGDARQADPEAGARVVPLPDRTQRPLYRVHQQIQASARPPPKAGEDEPERGPGARPRRRRRHSATRLELRR
Ga0326721_101947661	3300032080	Soil	MSNFADGLFPGWLSFVMLLPFLMLAFGLWFICRAFTDRGGARQEAEPEDRSRVVVSLPDRTQQPLYRVHQQIQASARPPPKAQPDEPGRASGGRPRRRRHHGTTTRLELRR
Ga0307415_1005132121	3300032126	Rhizosphere	AAAGGHEMSNFADGLFPKYLSFLMLLPFLMMGFGLWFICRAFSDKGDARQADPEAGARVVPLPDRTQRPLYRVHQQIQASARPPPKAGEDEPERGPGARPRRRRRHSATRLELRR
Ga0307415_1008019043	3300032126	Rhizosphere	FADGLFPGWLSFVMLLPFLMMAFGLWFICRAFTDRGGARQEAEPQDRSRVVVSLPDRTQQPLYRVHQQIQASARPPAKAQPDEPARASAGRSRRRRHHGTTTRLELRR
Ga0268251_103589612	3300032159	Agave	MSNLAGGLFPKYLSFLMLLPFLMMGFGLWFICRAFRDKGDARQSDPEAWSQVSVLPDRSQRPLYHVHQQIQASARPPPKAQPDEPKRGPGGRPRRRRHHSTTRLELRK
Ga0247830_101346201	3300033551	Soil	MSNFAAGLLPGWASFLIFLPFIMLGFGLWFICRAFTDRGDARQADPDTQSRVVALPDRAQRPLYRVHQQIQASARPPPKAEPDEPERGRGGRRPPRRHRSNTRLELHQ
Ga0334911_022711_597_866	3300034131	Sub-Biocrust Soil	MSNFAHGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDRGGARQEADPQDRARVIPLPDRTQQPLYRVHQQIQASARPPPKPQPDEPDRGS
Ga0334943_074811_118_447	3300034137	Biocrust	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDRGGARQEADPQDRARVIPLPDRTQQPLYRVHQQIQASARPPPKPWPDEPARVSGGRPRRRRHPGTTRLELRR
Ga0334913_001418_5569_5895	3300034172	Sub-Biocrust Soil	MSNFAEGLFPGWLSFLMLLPFIMLGFGLWFICRAFSDRGDARQPDPEARARVVVLPDRAQRPLYHVHQQIQASARPPPKPGPDEPERGPGGRGRRPRHHSTTRLELRQ
Ga0334932_003952_1537_1863	3300034174	Sub-Biocrust Soil	MSNFADGLFPGWLSFLMLLPFIMLGFGLWFICRAFTDKGGARQPDPEAQARVVVLPDRTQRPLYRVHQQIQASARPPPKPQPDEPDRGSGGRRRRRRHHSTTRLELRQ
Ga0334932_036564_489_824	3300034174	Sub-Biocrust Soil	MSNFADGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDRGGARQEADPQDRARVVPLPDRTQQPLYRVHQQIQASASARPPRKPWPDEPARASGGRPRRRRHPGTTRLELRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084448

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences