Basic Information | |
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Family ID | F084386 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 47 residues |
Representative Sequence | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Number of Associated Samples | 98 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 14.14 % |
% of genes near scaffold ends (potentially truncated) | 46.43 % |
% of genes from short scaffolds (< 2000 bps) | 76.79 % |
Associated GOLD sequencing projects | 94 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (66.071 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.857 % of family members) |
Environment Ontology (ENVO) | Unclassified (41.071 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (46.429 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 82.35% β-sheet: 0.00% Coil/Unstructured: 17.65% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Natural And Restored Wetlands Soil Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Agricultural Soil Soil Soil Soil Rice Paddy Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Peat Soil Host-Associated Arabidopsis Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0055455_100736752 | 3300003990 | Natural And Restored Wetlands | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFTRRSAL* |
Ga0055455_100923392 | 3300003990 | Natural And Restored Wetlands | MWLLILLILALLVFGVWGAIKVAFWVILVALAVALVVGFLGRGRFGSRGAV* |
Ga0062589_1000220495 | 3300004156 | Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY* |
Ga0062591_1016938491 | 3300004643 | Soil | LILAILVFGVIGAIKLALWVLLLAVLIAVVAGFLGRGLFTRTN* |
Ga0058862_128269781 | 3300004803 | Host-Associated | LILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF* |
Ga0070690_1001592203 | 3300005330 | Switchgrass Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF* |
Ga0068868_1007746272 | 3300005338 | Miscanthus Rhizosphere | MIWLLRLIFAILVFGVFGAIKLAFWVLLLAVLVAVVAGFLGRGLFTGTR* |
Ga0070687_1000960762 | 3300005343 | Switchgrass Rhizosphere | MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY* |
Ga0070675_1022252021 | 3300005354 | Miscanthus Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVIAGFLGRGLFVRRSSL* |
Ga0070710_101128322 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MWFLILLILALIVFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFTGRRGAL* |
Ga0070711_1005261222 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MRASAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF* |
Ga0070678_1001009582 | 3300005456 | Miscanthus Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL* |
Ga0070672_1005501351 | 3300005543 | Miscanthus Rhizosphere | MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF* |
Ga0070704_1000419995 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLLLLLIVAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY* |
Ga0066654_106539951 | 3300005587 | Soil | GIWGAVKLAFWVLLIALLVALVAGFLGRGLFTRTY* |
Ga0068864_1004885682 | 3300005618 | Switchgrass Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSF* |
Ga0075286_10163302 | 3300005886 | Rice Paddy Soil | MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFTRRSA |
Ga0075289_10086271 | 3300005888 | Rice Paddy Soil | IFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL* |
Ga0075290_10021262 | 3300005889 | Rice Paddy Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALVVAVVAGFLGRGLFVRRSSF* |
Ga0066652_1000355903 | 3300006046 | Soil | MWLLLLLILAVLLFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL* |
Ga0097621_1004185164 | 3300006237 | Miscanthus Rhizosphere | IFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL* |
Ga0074055_114859174 | 3300006573 | Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL* |
Ga0074054_120945183 | 3300006579 | Soil | MWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLLARRSSL* |
Ga0074054_121778721 | 3300006579 | Soil | RMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL* |
Ga0074049_130232812 | 3300006580 | Soil | RMWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL* |
Ga0074048_134559683 | 3300006581 | Soil | GVWGAVKVAFWVLLIALAVAVVAGFLGRGLLVRRSSL* |
Ga0079222_100744012 | 3300006755 | Agricultural Soil | MWLLLLFILALILFGIWGAIKLTFWVLLIALAVAVVAGFLGRGLFGTRGTV* |
Ga0066659_110956333 | 3300006797 | Soil | FGVWGAIKLAFWVLLIALAVALIIGFLGRGLFGSRRGAI* |
Ga0079220_100921342 | 3300006806 | Agricultural Soil | MRASAVLIFGVWGAVKVAFWVLWIALAVAVVAGFLGRGLFVRRSSF* |
Ga0075433_117252781 | 3300006852 | Populus Rhizosphere | GVWGAVKVAFWVLLIALAVAIIAGFLGRGLFTRRSAL* |
Ga0068865_1005568563 | 3300006881 | Miscanthus Rhizosphere | RMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL* |
Ga0075436_1000699795 | 3300006914 | Populus Rhizosphere | DAGIWLRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF* |
Ga0079219_100656292 | 3300006954 | Agricultural Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLWIALAVAVVAGFLGRALFVRRSSF* |
Ga0075423_130206401 | 3300009162 | Populus Rhizosphere | LLLLILAVLLLGVWGAVKVAFWVLLIALAVAIIAGFLGRVLFTRRSAL* |
Ga0105241_120035143 | 3300009174 | Corn Rhizosphere | ALILFGVWGAIKVAFWVLLIALAVALIVGFLGRGLFGGRRGAI* |
Ga0126309_102159474 | 3300010039 | Serpentine Soil | SMIWLLLFILAILIFGIGGAIKLTFWVILIALAVILIAAFLGRGLYSRA* |
Ga0126318_100052432 | 3300010152 | Soil | LILALIVFGVWGAIKLAFWVLLIALIVALVVGLLGRGLFSGRRGTV* |
Ga0126318_104264861 | 3300010152 | Soil | LILALIVFGVWGAIKLAFWVLLIALIVALVVGLLGRGLFGGRRGTV* |
Ga0126318_104905363 | 3300010152 | Soil | ILLILALILFGVWGAIKLAFWVLLIALAVALIVGFLGRGLFGSRGGAI* |
Ga0134128_124801093 | 3300010373 | Terrestrial Soil | FGVWGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI* |
Ga0105239_116210253 | 3300010375 | Corn Rhizosphere | LALILFGVWGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI* |
Ga0134122_106739652 | 3300010400 | Terrestrial Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVALVVGFLGRGLFGSRRGAI* |
Ga0151490_11105791 | 3300011107 | Soil | LLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL* |
Ga0105246_104685024 | 3300011119 | Miscanthus Rhizosphere | ALILFGVWGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI* |
Ga0150985_1216906323 | 3300012212 | Avena Fatua Rhizosphere | MRIGMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAIIAGFLGRGLFVRRSSF* |
Ga0137370_109512291 | 3300012285 | Vadose Zone Soil | ILALILFGVWGAIKVAFWVLLIALAVALIAGFLGRGLFGSRRGAI* |
Ga0134053_14368161 | 3300012406 | Grasslands Soil | MWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL* |
Ga0150984_1012723163 | 3300012469 | Avena Fatua Rhizosphere | MRIGMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAIIAGFLGRGLFVRRSSL* |
Ga0150984_1084402771 | 3300012469 | Avena Fatua Rhizosphere | DLLAILVFGVFGAIKIAFWVLLLAVLVAVVAGFLGRGLFTGTR* |
Ga0150984_1106282882 | 3300012469 | Avena Fatua Rhizosphere | VFGVIGAIKLAFWVLLIALLVAVVAGFLGRSLFTTR* |
Ga0164298_101714384 | 3300012955 | Soil | MWLLLLLILAVIIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL* |
Ga0164303_112971522 | 3300012957 | Soil | MWFLILLILALIVFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFSSRRGAL* |
Ga0164299_116206442 | 3300012958 | Soil | YLPPDAGIWLRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY* |
Ga0164301_100074005 | 3300012960 | Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL* |
Ga0164307_118272852 | 3300012987 | Soil | VFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFSSRRGAL* |
Ga0157371_112672653 | 3300013102 | Corn Rhizosphere | WGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI* |
Ga0157378_110517643 | 3300013297 | Miscanthus Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSY* |
Ga0157380_105983112 | 3300014326 | Switchgrass Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFCVLLIALAVAVVAGFLGRGLFVRRSSF* |
Ga0132258_105827473 | 3300015371 | Arabidopsis Rhizosphere | MWLLLLILAVLVVGVWGAVKVAFWVLLIALAVAVIAGFLGRGLFVRRSSF* |
Ga0163161_113364852 | 3300017792 | Switchgrass Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF |
Ga0184644_13896953 | 3300019269 | Groundwater Sediment | LAVLVFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0193728_10411024 | 3300019890 | Soil | MWFLILLILALIVFGVVGAIKLAFWVLLIALAVAVVAGFLGRGLFGSRRGAL |
Ga0197907_107551361 | 3300020069 | Corn, Switchgrass And Miscanthus Rhizosphere | WLRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0206349_15777282 | 3300020075 | Corn, Switchgrass And Miscanthus Rhizosphere | LLLILALIVFGVWGAIKLAFWVLLIALIVALIVGFLGRGLFGGRRGAI |
Ga0206351_103030212 | 3300020077 | Corn, Switchgrass And Miscanthus Rhizosphere | LLILALIVFGVWGAIKLAFWVLLIALIVALIVGFLGRGLFGGRRGAI |
Ga0206350_105320831 | 3300020080 | Corn, Switchgrass And Miscanthus Rhizosphere | LLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0206354_100616442 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF |
Ga0206354_102197943 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0206353_118045704 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | LILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0193719_103484462 | 3300021344 | Soil | PLRMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0224712_100709733 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | LILFGVWGAIKLACWVLLIALAVALIVGFLGRGLFGSRGGAI |
Ga0224712_104848871 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | LLILAILVFGVIGAIKLALWVLLLAVLVAVVAGFLGRGLFTRTN |
Ga0224712_106527702 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | LLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0207656_102486851 | 3300025321 | Corn Rhizosphere | LLILALILFGVWGAIKLAFWVLLIALAVALIVGFLGRGLFGSRRGAI |
Ga0207656_105871972 | 3300025321 | Corn Rhizosphere | MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF |
Ga0210120_10120312 | 3300025556 | Natural And Restored Wetlands | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFTRRSAL |
Ga0207692_101408392 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MWFLILLILALIVFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFTGRRGAL |
Ga0207710_107012142 | 3300025900 | Switchgrass Rhizosphere | GVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0207688_105469001 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRR |
Ga0207647_101811053 | 3300025904 | Corn Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0207671_100218357 | 3300025914 | Corn Rhizosphere | LFGVWGAIKLAFWVLLIALAVALIVGFLGRGLFGSRGGAI |
Ga0207681_106657722 | 3300025923 | Switchgrass Rhizosphere | MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY |
Ga0207644_109902582 | 3300025931 | Switchgrass Rhizosphere | AVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF |
Ga0207686_102502522 | 3300025934 | Miscanthus Rhizosphere | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL |
Ga0207658_106662891 | 3300025986 | Switchgrass Rhizosphere | LVFGVIGAIKLALWVLLLAVLIAVVAGFLGRGLFTRTN |
Ga0208284_10026722 | 3300026003 | Rice Paddy Soil | LRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALVVAVVAGFLGRGLFVRRSSF |
Ga0207703_114893223 | 3300026035 | Switchgrass Rhizosphere | LLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF |
Ga0208761_10306752 | 3300026995 | Soil | PMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL |
Ga0209073_102524232 | 3300027765 | Agricultural Soil | MRASAVLIFGVWGAVKVAFWVLWIALAVAVVAGFLGRGLFVRRSSF |
Ga0209074_103339382 | 3300027787 | Agricultural Soil | MWLLLLFILALILFGIWGAIKLTFWVLLIALAVAVVAGFLGRGLFGTRGTV |
Ga0268265_111676441 | 3300028380 | Switchgrass Rhizosphere | VFGVIGAIKLALWVLLLAVLIAVVAGFLGRGLFTRTN |
Ga0307295_101663471 | 3300028708 | Soil | LRMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0307293_100125192 | 3300028711 | Soil | MWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0307293_102526022 | 3300028711 | Soil | MTIRMWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0307302_100860994 | 3300028814 | Soil | LLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0307312_103908292 | 3300028828 | Soil | MRIRMWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0308205_10293751 | 3300030830 | Soil | LVFGVWGAVKIAFWVLLIALAVALIAGFLGRGLFVRRSSL |
Ga0102759_19135462 | 3300030858 | Soil | LILALILFGVWGAIKLAFWVLLIALVVALIVGFLGRGLFGTRRGAL |
Ga0308202_11028982 | 3300030902 | Soil | FGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0308202_11173081 | 3300030902 | Soil | LVFGVWGAVKIAFWVLLIALAVALIAGFLGRGLFVRRSSF |
Ga0308201_102333351 | 3300031091 | Soil | FGVWGAVKIAFWVLLIALAVALIAGFLGRGLFVRRSSL |
Ga0308204_103463382 | 3300031092 | Soil | LLILLVLLVGVWGAIKIAFWVLVIALLVALVAGFLGRSLFAR |
Ga0307498_102940622 | 3300031170 | Soil | MWLLLLLILAVLIFGVWGAVKIAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0307499_101258632 | 3300031184 | Soil | MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSF |
Ga0308194_103959652 | 3300031421 | Soil | LILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL |
Ga0318534_102586162 | 3300031544 | Soil | VLGIWGAIKLAFWVLLIALLVALVAAFLGRGMFTRSGY |
Ga0308175_1000847663 | 3300031938 | Soil | MWLLLLLILAVLIFGVWGAVKIAFWVLLIALAVAIVAGFLGRGLFVRRSSL |
Ga0308175_1005830363 | 3300031938 | Soil | MWLLLLLILAVLLFGIWGAVKVAFWVLLIALAVAVIAGFLGRGLLTRRSAL |
Ga0308175_1018384273 | 3300031938 | Soil | VLILALILCGVWGAIKLAFWVLLIALVVALIVGFLGRGLFGTRRGAL |
Ga0308176_117969501 | 3300031996 | Soil | LILALILFGVWGAIKVAFWVLLIALAVALIVGFLGRGLFGGRRGAI |
Ga0326726_101656963 | 3300033433 | Peat Soil | MWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLLGRRSSF |
Ga0326723_0022312_2434_2586 | 3300034090 | Peat Soil | MWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLVRRSSL |
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