NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F084373

Metagenome Family F084373

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084373
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 45 residues
Representative Sequence MDEPEAPKGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMF
Number of Associated Samples 102
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 12.50 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 90.18 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.464 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(26.786 % of family members)
Environment Ontology (ENVO) Unclassified
(27.679 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.857 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.
1JGI24744J21845_100159991
2JGIcombinedJ26739_1000813842
3JGI25614J43888_101714382
4Ga0066397_101336151
5Ga0066395_108818691
6Ga0066673_107137871
7Ga0066690_103517751
8Ga0066388_1020189411
9Ga0066388_1084609632
10Ga0066388_1086698712
11Ga0070685_109242402
12Ga0070679_1021319872
13Ga0070704_1018032582
14Ga0066661_100920821
15Ga0066905_1009010571
16Ga0066903_1011460561
17Ga0068858_1019690491
18Ga0081455_104909311
19Ga0070717_121292341
20Ga0075365_101500871
21Ga0097621_1012158432
22Ga0066665_109583641
23Ga0075431_1001028242
24Ga0075425_1004995712
25Ga0075425_1020140702
26Ga0075434_1018961022
27Ga0066710_1002344022
28Ga0099830_105393131
29Ga0105247_104409881
30Ga0075423_104648441
31Ga0126380_108899931
32Ga0126384_119583741
33Ga0126373_110477972
34Ga0126370_107462481
35Ga0126376_108215782
36Ga0126372_127883652
37Ga0126372_129461862
38Ga0126378_106518581
39Ga0126379_135032782
40Ga0126383_113138721
41Ga0134121_107887572
42Ga0137391_111814222
43Ga0137376_101366671
44Ga0137379_111230012
45Ga0137386_102629891
46Ga0137375_100881171
47Ga0162652_1000594931
48Ga0126369_117728772
49Ga0164309_102447901
50Ga0164308_107967922
51Ga0157372_105949771
52Ga0132255_1058989591
53Ga0182032_106113382
54Ga0182040_105522561
55Ga0190274_110135302
56Ga0173482_100627921
57Ga0193705_10098323
58Ga0193731_10033174
59Ga0193696_10040711
60Ga0193719_100654211
61Ga0210387_114711541
62Ga0126371_137167341
63Ga0222623_100284281
64Ga0222623_103546941
65Ga0207692_101370811
66Ga0207692_101466632
67Ga0207686_117766161
68Ga0257176_10260161
69Ga0257161_10780592
70Ga0209056_104994222
71Ga0208988_10292731
72Ga0209180_105953622
73Ga0137415_109659911
74Ga0307309_101343783
75Ga0307301_100338481
76Ga0307317_101400441
77Ga0307318_103168071
78Ga0307288_100194472
79Ga0307306_101200072
80Ga0307281_103361791
81Ga0307302_101536092
82Ga0307310_104998072
83Ga0170824_1041154811
84Ga0318538_103801872
85Ga0318572_106992111
86Ga0318496_103235762
87Ga0318501_105296842
88Ga0318537_101295012
89Ga0318521_103159761
90Ga0318521_105193162
91Ga0318546_101672362
92Ga0318498_102888841
93Ga0318498_105331132
94Ga0318498_105377681
95Ga0318566_106031972
96Ga0318552_103834462
97Ga0318529_104564731
98Ga0318576_100704232
99Ga0318511_100654462
100Ga0318527_103053612
101Ga0318536_102348132
102Ga0318522_100343132
103Ga0310913_111284201
104Ga0306922_105737211
105Ga0318507_101610172
106Ga0310911_102701412
107Ga0318549_102182531
108Ga0318505_100482591
109Ga0318513_100966272
110Ga0318513_104022132
111Ga0318524_107001482
112Ga0306924_100974553
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 39.73%    β-sheet: 0.00%    Coil/Unstructured: 60.27%
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Variant

51015202530354045MDEPEAPKGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFCytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
45.5%54.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Soil
Arabidopsis Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Endosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
15.2%7.1%10.7%3.6%26.8%3.6%6.2%3.6%4.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24744J21845_1001599913300002077Corn, Switchgrass And Miscanthus RhizosphereMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLAN
JGIcombinedJ26739_10008138423300002245Forest SoilMNEPEQRKEDRYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQ
JGI25614J43888_1017143823300002906Grasslands SoilMDNLDESKEEKYVETARERRIANAVLLFFLLVVVGGGIWLANA
Ga0066397_1013361513300004281Tropical Forest SoilMDEPEAPRGDKYVETARDRRIANALLLFFLIVVVGGGIWLAN
Ga0066395_1088186913300004633Tropical Forest SoilMTEPEQTRQDKYVETARERRIANAVLLFFLLVVVGGGIWLANAMFEQR
Ga0066673_1071378713300005175SoilMNEPEPPNGDKYVETARERRIANVVLLLFLVLIVGGGIWLANAMF
Ga0066690_1035177513300005177SoilMDGSEQPRQEKYVETARDRRIANALLLFFVIVVVGGGIWL
Ga0066388_10201894113300005332Tropical Forest SoilMNEQEPLRPDDYVETPRDRRIANAVLLFFLILVVGGGIWLA
Ga0066388_10846096323300005332Tropical Forest SoilVIEPEQPQQDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRR
Ga0066388_10866987123300005332Tropical Forest SoilMEDSPPPKQDEYVETERDRRIANAVLVTFLVVLVGGGIWLANAMFDQRRIDDCVAQ
Ga0070685_1092424023300005466Switchgrass RhizosphereMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLANA
Ga0070679_10213198723300005530Corn RhizosphereMIRSMSEPGPDKYVETPRDRWVANAVLLFFLLLVVGGGIWLANAMFEQR
Ga0070704_10180325823300005549Corn, Switchgrass And Miscanthus RhizosphereMNEPEPSNGDRYVETARERRIANAVLLLFLVLIVGGGIWLANAMF
Ga0066661_1009208213300005554SoilMDGSEQPRQEKYVETARDRRIANALLLFFVIVVVGGGIW
Ga0066905_10090105713300005713Tropical Forest SoilMNEPEPPNGDKYVETARERRIANAVLLLFLVLIVGGGIWLANAMFDQR
Ga0066903_10114605613300005764Tropical Forest SoilMFARYHAGMNEPEPPNGDKYVETARERRIANAVLLLFLVLIV
Ga0068858_10196904913300005842Switchgrass RhizosphereMIRSMSEPGPDKYVETPRDRWVANAVLLFFLLLVVGGGIWLAN
Ga0081455_1049093113300005937Tabebuia Heterophylla RhizosphereMSEPEQHGPDDYVETPRDRRIANALLLFFLIVVVGGGI
Ga0070717_1212923413300006028Corn, Switchgrass And Miscanthus RhizosphereMDEPETPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLAN
Ga0075365_1015008713300006038Populus EndosphereMNEQEPLRPDDYVETPRDRRIANAVLLLFLVLIVGGGIWLAN
Ga0097621_10121584323300006237Miscanthus RhizosphereMIRSMSEPGPDKYVETPRDRWVANAVLLFFLLQVVGGGIWLANA
Ga0066665_1095836413300006796SoilMDEARPPNEYRETARERRIANLVLLVLLVVLVGGGLWLANAMFEQRMIDDCV
Ga0075431_10010282423300006847Populus RhizosphereMSEQPGPEKYVETPRDRRIANAVLLLFLIIIVGGGIWLANA
Ga0075425_10049957123300006854Populus RhizosphereMNEPEPPNGDKYVETARERRIANVVLLLFLVVIVGGGIWLANAMFEQRRL
Ga0075425_10201407023300006854Populus RhizosphereMDEPEATKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFE
Ga0075434_10189610223300006871Populus RhizosphereMSEPEQRRPDDYVETPRDRRIANALLLFFLIVVVGGGIWLAN
Ga0066710_10023440223300009012Grasslands SoilMDGSEQPRQEKYVETARDRRIANALLLFFVIVVVGGGIWLA
Ga0099830_1053931313300009088Vadose Zone SoilMDEPKSPKQDEYVESERDRRIANAVLLVFFIVVVGAGIWLANAMLDQRKLDD
Ga0105247_1044098813300009101Switchgrass RhizosphereMSEQTGPDKYVETPRDRRIANAVLLLFLVLIVGGGIW
Ga0075423_1046484413300009162Populus RhizosphereMDGSEQPRQEKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQ
Ga0126380_1088999313300010043Tropical Forest SoilMDDPEQPRQDKYVETARDRRIANAVLLFFLIVVVGGGIWLANAMFEQRRLDDCLAQ
Ga0126384_1195837413300010046Tropical Forest SoilMDEPEAPRGDKYVETARDRRIANAVLLFFLIVVVGG
Ga0126373_1104779723300010048Tropical Forest SoilMDEPEAPKGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFE
Ga0126370_1074624813300010358Tropical Forest SoilMDEPETPKDDKYVETARDRRIANAVLLFFLIVVVGG
Ga0126376_1082157823300010359Tropical Forest SoilMDEPETPKDDKYVETARDRRIANAVLLFFLIVVVGGGIWLANAMFEQRRLDDC
Ga0126372_1278836523300010360Tropical Forest SoilMNEPEPANGDKYVETARERRIANVVLLLFLVLIVGG
Ga0126372_1294618623300010360Tropical Forest SoilMDEPEAPKGDNYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRQLD
Ga0126378_1065185813300010361Tropical Forest SoilMDEPETPKDDKYVETARDRRIANAVLLFFLIVVVGGGIWLANAMFEQRRLDDCLAQGG
Ga0126379_1350327823300010366Tropical Forest SoilMDEPEAPKGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQR
Ga0126383_1131387213300010398Tropical Forest SoilLSGYDRAVIEPEQPQQDKYVETARDRRIANALLLFFLIVVVGGGIWLANAM
Ga0134121_1078875723300010401Terrestrial SoilMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLANAMFDQRALD
Ga0137391_1118142223300011270Vadose Zone SoilMDNLEESKEEKYVETARERRIANAVLLFFLLVVVGGGIWLANAIFEQHRLDDYIALGRRN
Ga0137376_1013666713300012208Vadose Zone SoilMNEPEPSNGDRYVETARERRIANAVLLLFLVLIVGGGI
Ga0137379_1112300123300012209Vadose Zone SoilMDDPGQPNDDKYVETARERRIANALLLFFLILVVGGGIWLANAMFE
Ga0137386_1026298913300012351Vadose Zone SoilMDEPEAPKGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRRLDDCMAQ
Ga0137375_1008811713300012360Vadose Zone SoilMDEPEAPKGDKYVETARDRRIANALLLFFLIVVVG
Ga0162652_10005949313300012941SoilLTGYDRAVNEPEQPNGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRR
Ga0126369_1177287723300012971Tropical Forest SoilMDEPEAPRGDKYVETARDRRIANAILLFFLIVVVGGGIWLANAMFEQ
Ga0164309_1024479013300012984SoilMIRSMSEPGPDKYVETPRDRWVANAVLLFFLLLVVGGGIWLANAMFEQRALDD
Ga0164308_1079679223300012985SoilMIRSMSEPGPDKYVETPRDRWVANAVLLFFLLLVVGGGIWLANA
Ga0157372_1059497713300013307Corn RhizosphereVETPRDRRIANAVLLLFLVLIVGGGIWLAHAMFDQRALDNCMAQ
Ga0132255_10589895913300015374Arabidopsis RhizosphereMNEQEPLRPDDYVETPRDRRIANAVLLFFLILVVGGGIWLANAMFEQRALDNC
Ga0182032_1061133823300016357SoilMDEPEQPQEDKYVETARDRRIANALILFFLVLVVGGGIWLAN
Ga0182040_1055225613300016387SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRQLDDCLAQG
Ga0190274_1101353023300018476SoilMNEQEPLRPDDYVETPRDRRIANAVLLLFLVLIVGGGIWLANAMFDQRALDNC
Ga0173482_1006279213300019361SoilMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLANAM
Ga0193705_100983233300019869SoilMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGG
Ga0193731_100331743300020001SoilMMRRMSEQPGPDRYVETARDRRIANAVLLLFLVLIVGGGIWLANAMFDQRALDDCM
Ga0193696_100407113300020016SoilMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLA
Ga0193719_1006542113300021344SoilMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIV
Ga0210387_1147115413300021405SoilMNEPEQRKEDRYVETARDRRIANALLLFFVIVVVGG
Ga0126371_1371673413300021560Tropical Forest SoilMDEPEAPKGDKYVETARDRRIANALLLFFLIVVVGGGIWLANAMF
Ga0222623_1002842813300022694Groundwater SedimentMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGIWLANAMFD
Ga0222623_1035469413300022694Groundwater SedimentMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGIWLANA
Ga0207692_1013708113300025898Corn, Switchgrass And Miscanthus RhizosphereMNEPEPSNGDRYVETARERRIANAVLLLFLVLIVGG
Ga0207692_1014666323300025898Corn, Switchgrass And Miscanthus RhizosphereMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGI
Ga0207686_1177661613300025934Miscanthus RhizosphereMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVVGGIWLANAMFDQRALDNCMAQ
Ga0257176_102601613300026361SoilMNEPEQRKEDRYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRQLDDC
Ga0257161_107805923300026508SoilMNEPEAHKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAM
Ga0209056_1049942223300026538SoilMDGSEQPRQEKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRLLD
Ga0208988_102927313300027633Forest SoilMIARMSEQPGPDKYVETARDRWIANAVLLFFLVLI
Ga0209180_1059536223300027846Vadose Zone SoilMDDPTSPTPGERKPDDYVESDRDRRIANAVLLIFILVLVGGGIWL
Ga0137415_1096599113300028536Vadose Zone SoilMDEPNATGPEKYIETPRDRRVANIILLLILAAVVGGGIWLANAMFEQRALD
Ga0307309_1013437833300028714SoilMSEQPGPDKYVETPRDRRIANAVLLLLMILIVGGG
Ga0307301_1003384813300028719SoilMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGIWL
Ga0307317_1014004413300028720SoilMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGIWLANAMFDQRALD
Ga0307318_1031680713300028744SoilMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGIWLA
Ga0307288_1001944723300028778SoilMMRRMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGI
Ga0307306_1012000723300028782SoilMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLANAMFDQRAL
Ga0307281_1033617913300028803SoilMSEQPGPDKYVETARDRRIANAVLLLFLVLIVGGGIWLANAMFDQR
Ga0307302_1015360923300028814SoilLTGYDRAVNEPEQPNGDKYVETARDRRIANALLLFFLIVVVGGGIW
Ga0307310_1049980723300028824SoilMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWL
Ga0170824_10411548113300031231Forest SoilMSEQPGPDKYVETPRDRRIANAVLLLFLVLIVGGGIWLANAMFDQRALDN
Ga0318538_1038018723300031546SoilMDEPEQPQEDKYVETARDRRIANALILFFLVLVVGGGIWLANALFEQRR
Ga0318572_1069921113300031681SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRQ
Ga0318496_1032357623300031713SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRQLDD
Ga0318501_1052968423300031736SoilMDEPEQPQEDKYVETARDRRIANALILFFLVLVVGGGIWLANAL
Ga0318537_1012950123300031763SoilMDEPEAPRGDKYVETARDRRIANAVLLFFLVVVVGGGIW
Ga0318521_1031597613300031770SoilMDEPEAPRGDKYVETARDRRIANAVLLFFLVVVVGGGIWLANAMFEQRRLDDCLAQ
Ga0318521_1051931623300031770SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRQLDD
Ga0318546_1016723623300031771SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQRQLDDCLALGGRY
Ga0318498_1028888413300031778SoilMDDPEQPGQDKYVETARDRRIANALLLFFLVVVVGGGIWLANAMFE
Ga0318498_1053311323300031778SoilMDQPQPPRPDEYRETPRDRRIANLVLLVLLVILVGGGIWLANAMFE
Ga0318498_1053776813300031778SoilMDEPEQPQEDKYVETARDRRIANALILFFLVLVVGGGIWLANALFEQRRL
Ga0318566_1060319723300031779SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIW
Ga0318552_1038344623300031782SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRQLDDCLAQGGR
Ga0318529_1045647313300031792SoilMDQPQPPRPDEYRETPRDRRIANLVLLVLLVILVGGGIWLANA
Ga0318576_1007042323300031796SoilMDEPEAPKGDNYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRQLDDCL
Ga0318511_1006544623300031845SoilMDDPEQPRQDKYVETARDRRIANALLLFFLVVVVG
Ga0318527_1030536123300031859SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIWLA
Ga0318536_1023481323300031893SoilMDPRQDEYVETARDRRIANALLLFFLVVVVGGGIWLANAMFEQR
Ga0318522_1003431323300031894SoilMDEPEAPRGDKYVETARDRRIANAVLLFFLVVVVGGGIWLANA
Ga0310913_1112842013300031945SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLANAMFEQ
Ga0306922_1057372113300032001SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRQ
Ga0318507_1016101723300032025SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRQLDDCLAQG
Ga0310911_1027014123300032035SoilMDGSEQPKQEKYVETARDRRIANALLLFFLIVVVGGGIWLANAMFEQRQLDDCL
Ga0318549_1021825313300032041SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWLA
Ga0318505_1004825913300032060SoilMDEPEAPRGDKYVETARDRRIANAVLLFFLVVVVGGGIWLANAMFEQRQLDD
Ga0318513_1009662723300032065SoilMDEPEAPRGDKYVETARDRRIANAVLLFFLIVVVGGGIWLANAMFEQ
Ga0318513_1040221323300032065SoilMDQPQPPRPDEYRETPRDRRIANLVLLVLLVILVGGGIWLANAMFEQRMLDDCVA
Ga0318524_1070014823300032067SoilMDEPEAPKGDKYVETARDRRIANALLLFFVIVVVGGGIWL
Ga0306924_1009745533300032076SoilMDDPEQPRQDKYVETARDRRIANALLLFFLVVVVGGGIWLA


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