Basic Information | |
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Family ID | F084325 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 47 residues |
Representative Sequence | AVGALWWLLFHRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY |
Number of Associated Samples | 104 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 96.43 % |
% of genes from short scaffolds (< 2000 bps) | 91.07 % |
Associated GOLD sequencing projects | 101 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.56 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (77.679 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.500 % of family members) |
Environment Ontology (ENVO) | Unclassified (23.214 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (43.750 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 46.58% β-sheet: 0.00% Coil/Unstructured: 53.42% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.56 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Freshwater Lake Sediment Groundwater Aqueous Hot Spring Fe-Si Sediment Iron-Sulfur Acid Spring Groundwater Sediment Watersheds Soil Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Peatlands Soil Arctic Peat Soil Soil Soil Soil Hardwood Forest Soil Soil Peatland Permafrost Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Fen Arabidopsis Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Endosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Wastewater Activated Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1255355451 | 3300000956 | Soil | ALVGGAWWFLFHRYKKWYVWIAGAIPFLVVLFVFYTYLERLLPSNY* |
C688J35102_1190781471 | 3300002568 | Soil | AVGLLWWLVFHRYHRWTTWIAGAIPFALVLFFFYFHLERVLPSNY* |
C688J35102_1202832271 | 3300002568 | Soil | ILWGTIALAVGLLWWLLFHRHPRWTTWFVGVVPFLIVLFVAYTYLERLLPSNY* |
Ga0063455_1002330763 | 3300004153 | Soil | IGLLWWLLFHRHPRWTTWFLGVVPFLAALFVCYVYLERLLPSNY* |
Ga0066807_10107792 | 3300005161 | Soil | ESRTPVFIAGLIAALVGGLWWLVFHRYPRWTTWFAGVIPFLVALFVFYTYLERVLPNNY* |
Ga0066675_102533584 | 3300005187 | Soil | VGGLWWLFFHRYPRWTTWLAGVIPFLAALFVFYTFLERVLPNNY* |
Ga0070667_1013554833 | 3300005367 | Switchgrass Rhizosphere | WWLLFHRHPRWTTWLVGAVPFLAALFVCYTYLERLLPSNY* |
Ga0070710_114135991 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | IGLLWWLLFHRHPRWTTWFVGVVPFLAALFVCYVYVERLPPSNY* |
Ga0070662_1011865712 | 3300005457 | Corn Rhizosphere | LLWWLLFHRHPRWTTWFIGVIPYAVTLAIFYFYLERALPANY* |
Ga0070707_1008497562 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | SESRTPVLIWGLIAAAVGALWWLLFHRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY |
Ga0070699_1010148512 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | GESRAPVLIAGLIAALVGGLWWLLFHRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY |
Ga0068859_1027434023 | 3300005617 | Switchgrass Rhizosphere | FHRYPRWTTWFVGVVPFLIVLFVFYTYLERMLPSNY* |
Ga0066903_1088368292 | 3300005764 | Tropical Forest Soil | FHRYHRWTTWLMGGIPFAIVLFVFYYHLERLLPANY* |
Ga0068863_1022987231 | 3300005841 | Switchgrass Rhizosphere | VIGLLWWWLFHRHPRWTTWFVGAIPFLAALFVAYTYLERLLPSNY* |
Ga0081455_107580691 | 3300005937 | Tabebuia Heterophylla Rhizosphere | IIWGVVAAVIGLLWWLLFHRHPRWTTWFIGIVPFLAALFVCYVYLERLLPSNY* |
Ga0075417_105195491 | 3300006049 | Populus Rhizosphere | VFVAGLIAALVGGLWWLVFHRYPRWTTWFAGVIPFLVALFVFYTYFERVLPNNY* |
Ga0075029_1004594501 | 3300006052 | Watersheds | RYPRWTTWIIGAVPFLAALFVFYVYLERLLPSNY* |
Ga0075370_109498282 | 3300006353 | Populus Endosphere | LLWWLWFHRHPRWTTWFSGLIPFAVALTVFYFFLERVLPNNY* |
Ga0075521_106642442 | 3300006642 | Arctic Peat Soil | WLIFHRYHRWTTWFMGAIPFLVVLFLFYYHLERLLPANY* |
Ga0075421_1002614045 | 3300006845 | Populus Rhizosphere | VFVAGLIAAIVGGLWWLVFHRYPRWTTWFAGVIPFLVALFVFYSYLERVLPNNY* |
Ga0075421_1011310231 | 3300006845 | Populus Rhizosphere | LTGLLMLLVGLLWWLLFHRHPRWTTWFIGVIPFAVTLAIFYFYLERALPANY* |
Ga0075430_1002198173 | 3300006846 | Populus Rhizosphere | LYFHRHPRWTTWLIGAVPFAVSLFVFYVFLERVLPANY* |
Ga0075430_1002336321 | 3300006846 | Populus Rhizosphere | LWWLVFHRYPRWTTWFAGVIPFLLALFVFYTYLERVLPNNY* |
Ga0075430_1004791571 | 3300006846 | Populus Rhizosphere | FHRYPRWTTWFAGVIPFLVALFVFYTYFERVLPNNY* |
Ga0075431_1019472772 | 3300006847 | Populus Rhizosphere | SRTPTILTGLLMLLVGLLWWLLFHRHPRWTTWFIGVIPFAVTLAIFYFYLERALPANY* |
Ga0075420_1003130074 | 3300006853 | Populus Rhizosphere | VGGLWWLVFHRYPRWTTWFAGVIPFLIALFVFYTYLERVLPNNY* |
Ga0075429_1005547421 | 3300006880 | Populus Rhizosphere | GGLWWLVFHRYPRWTTGFAGVIPFLVALFVFYSYLERVLPNNY* |
Ga0075419_107037162 | 3300006969 | Populus Rhizosphere | VGGLWWLVFHRYPRWTTWFAGVIPFLLALFVFYTYLERVLPNNY* |
Ga0111539_111491402 | 3300009094 | Populus Rhizosphere | LVGLLWWWLFHRHPRWTTWFIGVIPFAITLAIFYFYLERALPANY* |
Ga0105245_126344373 | 3300009098 | Miscanthus Rhizosphere | VGLLWWLLFHRHPRWTTWMIGVIPFLVVLFVAYTYLERLLPSNY* |
Ga0099792_105395312 | 3300009143 | Vadose Zone Soil | LLFHRYPRWTTWFAGVIPFLVVLFDFYTYLERVLPNNY* |
Ga0114129_130709752 | 3300009147 | Populus Rhizosphere | TPAYLWGFIAAAVGGLWWLVFHRYPRWTTWFGGAIPFLIVLFFFYTYLERVLPNNY* |
Ga0105242_108564021 | 3300009176 | Miscanthus Rhizosphere | ILWGIVAAVIGLLWWLLFHRHPRWTTWFAGVVPFLAALFVCYVYVERLLPSNY* |
Ga0116220_104685952 | 3300009525 | Peatlands Soil | WWLLFHRHPRWTNWLIGVIPFLAALYFFFEYLQRVLPANY* |
Ga0114942_11748082 | 3300009527 | Groundwater | MVIAGLVMAVIGGLWWLFFHRHPRWTTWFIGVIPFAIALLVFYYLLERTLPNY* |
Ga0105249_121647021 | 3300009553 | Switchgrass Rhizosphere | LAIGLLWWLLFHRHPRWTTWLVGVLPFLAALFVAYTYLERLLPSNY* |
Ga0126307_113342972 | 3300009789 | Serpentine Soil | AALVGGLWWPLCHHYPRWTTWFPGVIPFLRTLFVFYTYLERFLPNNY* |
Ga0131092_109078363 | 3300009870 | Activated Sludge | LWWLLFHRHPRWTTWFIGVVPFFITLFVTYTYLERLLPSNY* |
Ga0131077_106638831 | 3300009873 | Wastewater | VGAAWWLVFHRYHRWTTWIVGAIPFTLVLFFFFFHLERVLPSNY* |
Ga0126315_107480311 | 3300010038 | Serpentine Soil | HRHPSWVTWIVGAIPFVVVLFVFYTFLERVLPANY* |
Ga0126312_103393431 | 3300010041 | Serpentine Soil | LLWWLLFHRHPRWTTWLVGAIPFFAALFVAYTYLERLLPSNY* |
Ga0136449_1002749561 | 3300010379 | Peatlands Soil | VGGLWWLAYHRHARYTTWIIGAIPFLVTLFFFYTYLERLLPANY* |
Ga0136449_1009254564 | 3300010379 | Peatlands Soil | GSLLPAVLSGLIVAVIGGLWWLGFHRHPRWTNWLIGVVPFLVALFFFFTYLERVLPSNY* |
Ga0137716_101989763 | 3300010938 | Hot Spring Fe-Si Sediment | TLWWLVFHRHRRWTTWFLGAMPFAVVLFFFYLHLERVLPANY* |
Ga0137383_105457842 | 3300012199 | Vadose Zone Soil | AAAGGALWWFLFHRYPRWTTWLAGVIPFLVVLFVFYTYLERVLPNNY* |
Ga0137399_104918551 | 3300012203 | Vadose Zone Soil | AVGALWWLLFHRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY* |
Ga0137379_104695041 | 3300012209 | Vadose Zone Soil | AAGGALWWFLFHRYPRWTTWLAGVIPFLVVLFVFYTYLERVLPNNY* |
Ga0137377_114905651 | 3300012211 | Vadose Zone Soil | LIAGLIAAAVGALWWLLFHRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY* |
Ga0137372_105934661 | 3300012350 | Vadose Zone Soil | PVFVSGLIAALVGGLWWLLFHRYSRWTSWFAGVVPFLIALFVFYTYLERVLPNNY* |
Ga0137384_107496252 | 3300012357 | Vadose Zone Soil | WGLIAAAVGALWWFLFHRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY* |
Ga0157295_103774173 | 3300012906 | Soil | AIGLLWWLLFHRHPRWTTWLVGVIPFLAALFVAYTYLERLLPSNY* |
Ga0164300_111727021 | 3300012951 | Soil | GALWWLVFHRYHRWTTWFMGAIPFAVVLVVFYYHLERLLPANY* |
Ga0164299_115110153 | 3300012958 | Soil | ITLVIGLLWWLLFHRHPRWTTWLVGVLPFLAALFVAYTYLERLLPSNY* |
Ga0126369_100629231 | 3300012971 | Tropical Forest Soil | RLPVYAAALIAALVGGLWWLAFHRYPRWTTWLAGVLPFLIALFVFYTYLERVLPNNY* |
Ga0157374_123509131 | 3300013296 | Miscanthus Rhizosphere | TLIWGTITLVIGLLWWLLFHRHPRWTTWLVGVLPFLAALFVAYTYLERLLPSNY* |
Ga0157375_128555883 | 3300013308 | Miscanthus Rhizosphere | WGTITLVIGLLWWLLFHRHPRWTTWLVGVLPFLAALFVAYTYLERLLPSNY* |
Ga0157380_131004641 | 3300014326 | Switchgrass Rhizosphere | WGAIALVIGLLWWWLFHRHPRWTTWFVGAIPFLAALFVAYTYLERLLPSNY* |
Ga0182024_100693407 | 3300014501 | Permafrost | LAYHRHARFTTWIIGAIPFLVTLFFFYTYLERLLPANY* |
Ga0132256_1021364692 | 3300015372 | Arabidopsis Rhizosphere | LLMVVVGLLWWFLFHRHPRWTTWFIGVIPYAVTLAIFYFYLERALPANY* |
Ga0132256_1036774632 | 3300015372 | Arabidopsis Rhizosphere | TLLAGLLMLLVGLLWWLLFHRHPRWTTWFIGVIPYAVTLAIFYFYLERALPANY* |
Ga0132255_1026719121 | 3300015374 | Arabidopsis Rhizosphere | KTPMLLAALLMLLVGLLWWLLFHRHPRWTTWFIGAVPFAITLAIFYFYLERALPANY* |
Ga0184635_103751311 | 3300018072 | Groundwater Sediment | HRHPRWTTWLVGVIPFLLALFVFYTYLERLLPSNY |
Ga0190265_112870812 | 3300018422 | Soil | LLWWLVYHRHPRWTNWIVGAIPFAVALFFFYSFLERVLPANY |
Ga0194119_104405053 | 3300020220 | Freshwater Lake | VVALIGGLWWLIFHRHPSLTNWLIGVLPFGAALFVFYALLERVLPSNY |
Ga0210397_105571461 | 3300021403 | Soil | FPTVITGLIAAAVGGLWWLLFHRHPRWTNWLIGVIPFLVALYFFFEYLGRLLPANY |
Ga0212123_100176301 | 3300022557 | Iron-Sulfur Acid Spring | FVGALWWLAFHRHPRWTNWVAGAIPFAVTLFFFYSYLERVLPANY |
Ga0209342_112678602 | 3300025326 | Soil | IVGAIGLLWWLMFHRHPSAMNWMIGAVPFAVALLVFYALLERVLPSNY |
Ga0208784_11331312 | 3300025732 | Aqueous | AGIILAVIGGLWWLLFHRHPRWTTWFIGVIPFAIALSAFYYLLERALPANY |
Ga0207684_100256081 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | PLPPLPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY |
Ga0207681_111403243 | 3300025923 | Switchgrass Rhizosphere | LALVGSLWWLVFHRHPRWTTWLVGAVPFLAALFVCYTYLERLLPSNY |
Ga0207687_117894533 | 3300025927 | Miscanthus Rhizosphere | LWWLLFHRHPRWTTWFVGAIPFLVVLFVAYTYLERLLPSNY |
Ga0207669_110226601 | 3300025937 | Miscanthus Rhizosphere | LLMLLVGLLWWLLFHRHPRWTTWFIGVIPYAVTLAIFYFYLERALPANY |
Ga0207711_116059701 | 3300025941 | Switchgrass Rhizosphere | TIVLAVGLLWWLLFHRHPRWTTWFIGVVPFLVVLFVAYTYLERLLPSNY |
Ga0207703_113378083 | 3300026035 | Switchgrass Rhizosphere | WWLFHRHPRWTTWFVGAIPFLAALFVAYTYLERLLPSNY |
Ga0207708_111677571 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | IAALVGGAWWFLFHRYKKWYVWIAGAIPFVIVLFVFYTYLERLLPSNY |
Ga0207683_118653071 | 3300026121 | Miscanthus Rhizosphere | VPTIIWGAIALVIGLLWWWLFHRHPRWTTWFVGAIPFLAALFVAYTYLERLLPSNY |
Ga0207698_117421341 | 3300026142 | Corn Rhizosphere | VIGLLWWWLFHRHPRWTTWFVGAIPFLAALFVAYTYLERLLPSNY |
Ga0209577_107167721 | 3300026552 | Soil | HRYPRWTTWFAGVIPFLVVLFVFYTYLERVLPNNY |
Ga0209331_11629532 | 3300027603 | Forest Soil | ESRLLTLWWGLVAAAVGAAWWLLFHRHPRWTTWFVGVAPFLLVMFVFYSHLDRLLPANY |
Ga0209481_101499221 | 3300027880 | Populus Rhizosphere | LIAALVGGLWWLVFHRYPRWTTWFAGVIPFLLALFVFYTYLERVLPNNY |
Ga0209382_108626381 | 3300027909 | Populus Rhizosphere | TILTGLLMLLVGLLWWLLFHRHPRWTTWFIGVIPFAVTLAIFYFYLERALPANY |
Ga0311332_110238901 | 3300029984 | Fen | WLLFHRHPRWTTWFVGAIPFLAALFVAYTYLERLLPSNY |
Ga0311337_117318971 | 3300030000 | Fen | IGGLWWLLFHRHPRWTTWFIGVIPFAIALVVFYYLLERTLPNY |
Ga0311350_110685421 | 3300030002 | Fen | WWLLFHRHPRWTTWFLGVVPFAISLSVFDYLLERVLPSNY |
Ga0311348_113710532 | 3300030019 | Fen | TVLAGLLTALIGALWWLLFHRHPRWTTWFLGVVPFAVSLSVFYYLLERVLPSNY |
Ga0302046_112863701 | 3300030620 | Soil | FLAAFVGALWWLVFHRYHRWTTWFVGAIPFAVALFLFYYHLERLLPANY |
Ga0308189_100957282 | 3300031058 | Soil | LWWLLFHRYARWTTWFAGVIPFLVALFVFYTYLERVLPNNY |
Ga0308201_103553351 | 3300031091 | Soil | AIVGGLWWLLFHRYPRWTTWFAGVIPFLVALFVFYTYLERVLPNNY |
Ga0265327_102707501 | 3300031251 | Rhizosphere | TIIWAVIVAIIGLLWWLAFHRHPRWPTWIVGAVPFLVALFFCYSYLERLLPSNY |
Ga0318528_102499111 | 3300031561 | Soil | VLWGAIAALVGALWWLVFHRHPSWVTWIVGAVPFLVVLFVFYTYFERVLPANY |
Ga0318572_106728931 | 3300031681 | Soil | ALWWLVFHRHPSWVTWIVGAVPFLVVLFVFYTYFERVLPANY |
Ga0318546_105955543 | 3300031771 | Soil | VFHRHPSWVTWIVGAVPFLVVLFVFYTYFERVLPANY |
Ga0318546_106964412 | 3300031771 | Soil | WWLAFHRHPRWTNWLAGAIPFAVTLFIFYTYLERALPANY |
Ga0318566_102752473 | 3300031779 | Soil | LIWGSIALAVGLLWWLLFHRHPRWTTWFVGVVPFLAALFVCYVYVERLLPSNY |
Ga0318547_104056491 | 3300031781 | Soil | VGALWWLVFHRHPSWVTWIVGAVPFLVVLFVFYTYFERVLPANY |
Ga0302322_1001446071 | 3300031902 | Fen | LLTALIGALWWLLFHRHPRWTTWFLGVVPFAVSLSVFYYLLERVLPSNY |
Ga0311367_108015602 | 3300031918 | Fen | LWWLLFHRHPRWTTWFLGVVPFAISLSVFYYLLERVLPSNY |
Ga0306926_128751342 | 3300031954 | Soil | LTGLVVAAVGGLWWLGFHRYPRWTNWVIGAIPFLVALYFFYMYLSRVLPANY |
Ga0315278_103372621 | 3300031997 | Sediment | HRHPRWTTWIIGTIPFALALFVFYSFLERVLPANY |
Ga0315278_112447523 | 3300031997 | Sediment | HRHPRWTTWIIGAIPFGIALFVFYSFLERVLPANY |
Ga0315274_108840651 | 3300031999 | Sediment | LWWLFFHRHPRWTTWIIGAIPFSLALFVFYSFLERVLPANY |
Ga0315284_109549182 | 3300032053 | Sediment | GALWWLFFHRHPRWTTWIIGAIPFALALFVFYSFLERVLPANY |
Ga0318533_111122173 | 3300032059 | Soil | LWWLLFHRHPRWTTWFVGVVPFLAALFVCYVYVERLLPSNY |
Ga0310890_110022872 | 3300032075 | Soil | LLMLLVGLLWWLLFHRHPRWTTWFIGVIPFAVTLAIFYFYLERALPANY |
Ga0306924_120275291 | 3300032076 | Soil | QTPAVLWGAIAALVGALWWLVFHRHPSWVTWIVGAVPFLVVLFVFYTYFERVLPANY |
Ga0315295_109657082 | 3300032156 | Sediment | LFFHRHPRWTTWIIGAIPFALALFVFYSFLERVLPANY |
Ga0307470_118648251 | 3300032174 | Hardwood Forest Soil | WWFLFHRYKKWYVWFAGAIPFIVVLFVFYTYLERLLPSNY |
Ga0315276_103069711 | 3300032177 | Sediment | LPTLLSALIVLLIGALWWLFFHRHPRWTTWIIGAIPFALALFVFYSFLERVLPANY |
Ga0315287_101853251 | 3300032397 | Sediment | TLLSGLVLLLVGLLWWLFFHRHPRWTTWIVGAIPFAIALFIFFSYLERVLPANY |
Ga0247829_107412631 | 3300033550 | Soil | GERQSRTPTVLWGLITLAVGLLWWLWFHRHPRWTTWFSGLIPFAVALTVFYFFLERVLPNNY |
Ga0314866_100718_398_520 | 3300033807 | Peatland | WWLLFHRHARWTTWLIGAIPFAVVLFVFFTHLGHALPSNY |
Ga0334977_0349215_559_699 | 3300033978 | Freshwater | ALVGGLWWLLFHRHPRWTTWVLGGVPFALALGYFFVLLERALPANY |
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