Metagenome / Metatranscriptome Family F084189

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084189
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	59 residues
Representative Sequence	PNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG
Number of Associated Samples	97
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.32 %
% of genes from short scaffolds (< 2000 bps)	91.07 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.821 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (19.643 % of family members)
Environment Ontology (ENVO)	Unclassified (33.929 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.464 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 26.83% Coil/Unstructured: 73.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF08239	SH3_3	28.57
PF01243	Putative_PNPOx	6.25
PF03734	YkuD	2.68
PF00583	Acetyltransf_1	1.79
PF03190	Thioredox_DsbH	0.89
PF00682	HMGL-like	0.89
PF01170	UPF0020	0.89
PF01345	DUF11	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	2.68
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	2.68
COG0116	23S rRNA G2445 N2-methylase RlmL	Translation, ribosomal structure and biogenesis [J]	0.89
COG0286	Type I restriction-modification system, DNA methylase subunit	Defense mechanisms [V]	0.89
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.89
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.89
COG1331	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains	General function prediction only [R]	0.89
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.89
COG2263	Predicted RNA methylase	General function prediction only [R]	0.89
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.89
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.89
COG2813	16S rRNA G1207 or 23S rRNA G1835 methylase RsmC/RlmG	Translation, ribosomal structure and biogenesis [J]	0.89
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.89
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.82 %
Unclassified	root	N/A	15.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.82 %
Unclassified	root	N/A	15.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.82 %
Unclassified	root	N/A	15.18 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	80.36 %
Unclassified	root	N/A	15.18 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	80.36 %
Unclassified	root	N/A	15.18 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.68 %
Unclassified	root	N/A	15.18 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	22.32 %
Unclassified	root	N/A	15.18 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.79 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.32 %
Unclassified	root	N/A	15.18 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.79 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.89 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.32 %
Unclassified	root	N/A	15.18 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.79 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.89 %
Actinomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.32 %
Unclassified	root	N/A	15.18 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	1.79 %
unclassified Actinomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces	0.89 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.89 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	22.32 %
Unclassified	root	N/A	15.18 %
Streptomyces sp. L2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. L2	1.79 %
Actinomyces sp. ICM47	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp. ICM47	0.89 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10068651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. L2	899	Open in IMG/M
3300004156\|Ga0062589_101059181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	763	Open in IMG/M
3300005171\|Ga0066677_10241431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300005175\|Ga0066673_10122865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1418	Open in IMG/M
3300005179\|Ga0066684_10017064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3694	Open in IMG/M
3300005187\|Ga0066675_10057458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2423	Open in IMG/M
3300005187\|Ga0066675_10535181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	878	Open in IMG/M
3300005332\|Ga0066388_101724804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1109	Open in IMG/M
3300005334\|Ga0068869_101498723	Not Available	599	Open in IMG/M
3300005335\|Ga0070666_11370567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300005336\|Ga0070680_100576650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	965	Open in IMG/M
3300005343\|Ga0070687_100591770	Not Available	761	Open in IMG/M
3300005354\|Ga0070675_101002742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767	Open in IMG/M
3300005439\|Ga0070711_100829024	Not Available	786	Open in IMG/M
3300005439\|Ga0070711_101049996	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005444\|Ga0070694_100431023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1037	Open in IMG/M
3300005457\|Ga0070662_100353939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300005518\|Ga0070699_100057400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3372	Open in IMG/M
3300005536\|Ga0070697_101452697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	613	Open in IMG/M
3300005540\|Ga0066697_10019856	All Organisms → cellular organisms → Bacteria	3625	Open in IMG/M
3300005549\|Ga0070704_100289013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300005558\|Ga0066698_11017497	Not Available	526	Open in IMG/M
3300005560\|Ga0066670_10600468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	670	Open in IMG/M
3300005560\|Ga0066670_10989691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300005578\|Ga0068854_102222574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300005587\|Ga0066654_10474503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300005598\|Ga0066706_11202194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300005598\|Ga0066706_11499386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300005615\|Ga0070702_100175153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1399	Open in IMG/M
3300006031\|Ga0066651_10600046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	585	Open in IMG/M
3300006032\|Ga0066696_10348835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	964	Open in IMG/M
3300006032\|Ga0066696_10933825	Not Available	552	Open in IMG/M
3300006034\|Ga0066656_10691887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300006049\|Ga0075417_10517270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp. ICM47	601	Open in IMG/M
3300006605\|Ga0074057_10786066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300006797\|Ga0066659_10508960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	966	Open in IMG/M
3300006797\|Ga0066659_11539046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300006880\|Ga0075429_100982610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300006954\|Ga0079219_10126181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1316	Open in IMG/M
3300007076\|Ga0075435_100007060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7974	Open in IMG/M
3300007076\|Ga0075435_100209470	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300009012\|Ga0066710_102172912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300009012\|Ga0066710_102609951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300009098\|Ga0105245_10354954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1454	Open in IMG/M
3300009137\|Ga0066709_104563178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300009162\|Ga0075423_11179596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	817	Open in IMG/M
3300009553\|Ga0105249_12693997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300009792\|Ga0126374_11551334	Not Available	545	Open in IMG/M
3300010325\|Ga0134064_10307528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300010337\|Ga0134062_10094011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1279	Open in IMG/M
3300010337\|Ga0134062_10147082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1045	Open in IMG/M
3300010337\|Ga0134062_10244680	Not Available	832	Open in IMG/M
3300010373\|Ga0134128_11357886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	783	Open in IMG/M
3300010397\|Ga0134124_12166157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300012208\|Ga0137376_10325759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300012208\|Ga0137376_11520830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300012208\|Ga0137376_11806543	Not Available	501	Open in IMG/M
3300012210\|Ga0137378_10513571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300012211\|Ga0137377_11299573	Not Available	657	Open in IMG/M
3300012356\|Ga0137371_10554289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. L2	885	Open in IMG/M
3300012385\|Ga0134023_1043101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1012	Open in IMG/M
3300012532\|Ga0137373_10909843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	645	Open in IMG/M
3300012929\|Ga0137404_10242539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1544	Open in IMG/M
3300012930\|Ga0137407_11705852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	600	Open in IMG/M
3300012930\|Ga0137407_11824266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300012961\|Ga0164302_10928669	Not Available	671	Open in IMG/M
3300012972\|Ga0134077_10328730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300012977\|Ga0134087_10477015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	623	Open in IMG/M
3300012987\|Ga0164307_11041601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	668	Open in IMG/M
3300015356\|Ga0134073_10008964	All Organisms → cellular organisms → Bacteria	2195	Open in IMG/M
3300015356\|Ga0134073_10017951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1667	Open in IMG/M
3300015358\|Ga0134089_10346039	Not Available	625	Open in IMG/M
3300017656\|Ga0134112_10217000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300017965\|Ga0190266_11156169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300018027\|Ga0184605_10197981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	912	Open in IMG/M
3300018071\|Ga0184618_10330988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300018468\|Ga0066662_11220368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
3300019356\|Ga0173481_10491757	Not Available	623	Open in IMG/M
3300019887\|Ga0193729_1049882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1703	Open in IMG/M
3300021413\|Ga0193750_1096752	Not Available	511	Open in IMG/M
3300025905\|Ga0207685_10358198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300025916\|Ga0207663_10632257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300025918\|Ga0207662_11144286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300026078\|Ga0207702_12237427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300026295\|Ga0209234_1158917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	794	Open in IMG/M
3300026316\|Ga0209155_1058174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1485	Open in IMG/M
3300026323\|Ga0209472_1303466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300026329\|Ga0209375_1230518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300026330\|Ga0209473_1034532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2269	Open in IMG/M
3300026343\|Ga0209159_1264731	Not Available	523	Open in IMG/M
3300026547\|Ga0209156_10454791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300026550\|Ga0209474_10599977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300027907\|Ga0207428_10134931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1887	Open in IMG/M
3300027909\|Ga0209382_11688519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300028380\|Ga0268265_11379014	Not Available	707	Open in IMG/M
3300028710\|Ga0307322_10006866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2460	Open in IMG/M
3300028718\|Ga0307307_10014373	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
3300028791\|Ga0307290_10366922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300028793\|Ga0307299_10068141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1318	Open in IMG/M
3300028793\|Ga0307299_10349945	Not Available	554	Open in IMG/M
3300028819\|Ga0307296_10662175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300028828\|Ga0307312_10183444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1339	Open in IMG/M
3300028875\|Ga0307289_10074588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1371	Open in IMG/M
3300028880\|Ga0307300_10146666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300031231\|Ga0170824_106968084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	899	Open in IMG/M
3300031446\|Ga0170820_16953287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	725	Open in IMG/M
3300031469\|Ga0170819_12049674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	863	Open in IMG/M
3300031547\|Ga0310887_10100755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1431	Open in IMG/M
3300031938\|Ga0308175_101222146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	836	Open in IMG/M
3300032180\|Ga0307471_102406625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300033412\|Ga0310810_10528969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1161	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.82%
Host-Associated	Host-Associated	15.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.04%
Plants	Host-Associated → Plants	15.18%
Aquatic	Environmental → Aquatic	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.46%
Sediment	Environmental → Aquatic → Sediment	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.75%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.46%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	9.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.04%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012385	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100686512	3300000597	Forest Soil	CTRANVTASFNNVAVATGHAGATTVTAQDTAPVTAKAAPLKPKKVVKVTPKVVSHKKPKATG*
Ga0062589_1010591811	3300004156	Soil	TLAPGASSSYICTRANVTSSFTNVAVASGTAGGTTVKAQDSAPVTAKAKPFVPPKVKPKVKPKVVSHKKPKATG*
Ga0066677_102414312	3300005171	Soil	SFNNVAVVTGTAGSTTVTAQDTAPVTAKKPLVPKKVVPKVVSHKKPKATG*
Ga0066673_101228653	3300005175	Soil	TCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKRPKATG
Ga0066684_100170647	3300005179	Soil	ASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG*
Ga0066675_100574581	3300005187	Soil	SFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKRPKATG*
Ga0066675_105351811	3300005187	Soil	SYTCTRANVRSSFTNVAVATGTAGSTKVTAQDTAPVTARKAFVPKKVKPKVVSHKKPKATG*
Ga0066388_1017248041	3300005332	Tropical Forest Soil	PGQSVSYTCTKANVTASFNNVAVATGTGGGKTVTAQDTAPVTAKKPFVPKKVVPKVVSHKKPKATG*
Ga0068869_1014987231	3300005334	Miscanthus Rhizosphere	TANFTNVAVASGTAGGTTVTAQDTAPVTAKAAALQPKTATKVKPKVVSHRKPKATG*
Ga0070666_113705672	3300005335	Switchgrass Rhizosphere	VQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0070680_1005766502	3300005336	Corn Rhizosphere	SFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0070687_1005917702	3300005343	Switchgrass Rhizosphere	SYTCTRANVTANFTNVAVASGTAGGTTVSAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG*
Ga0070675_1010027422	3300005354	Miscanthus Rhizosphere	SFNNVAVVAGTAGDKTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG*
Ga0070711_1008290242	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	TSSFTNVAVASGTAGGTTVKAQDSAPVTAKAKPFVPPKVKPKVVSHRKPKATG*
Ga0070711_1010499961	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NCNKTIGTLAPGQSASYKCTRPNVTKSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG*
Ga0070694_1004310232	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	TSSFNNVAVVTGTAGEKTVTAQDTAPVTAKKPFVPPKVVPKVVSHKKPKATG*
Ga0070662_1003539391	3300005457	Corn Rhizosphere	GASTSYTCTRPDVRSSFNNVAVVAGTAGDKTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG*
Ga0070699_1000574001	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SVSYKCTRPNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0070697_1014526971	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0066697_100198561	3300005540	Soil	ASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKRPKATG*
Ga0070704_1002890133	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	SYKCTRPNVTKSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG
Ga0066698_110174971	3300005558	Soil	NFTNVAVASGTAGGTTVTAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG*
Ga0066670_106004682	3300005560	Soil	NVAVATGTAGSTTVTAQDTAPVTARKALVPNKIKPKVVSHKKPKATG*
Ga0066670_109896912	3300005560	Soil	FNNVAVVTGKAGATTVTAQDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG*
Ga0068855_1018709981	3300005563	Corn Rhizosphere	NVAVVAGTAGDKTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG*
Ga0068854_1022225742	3300005578	Corn Rhizosphere	NVTKSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG*
Ga0066654_104745031	3300005587	Soil	CTRPNVQASFNNVAVATGTAGDKTVRAQDTAPVTAKAPFKPKPIPKVVSHKKPKATG*
Ga0066706_112021942	3300005598	Soil	SYKCTRPNVTKSFTNVAVVTGKAGGTTLTAQDTAPVTAKKPFVPKVVPKVVSHKKPKATG
Ga0066706_114993862	3300005598	Soil	SYTCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKRPKATG*
Ga0070702_1001751531	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	NFTNVAVASGTAGGTTVSAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG*
Ga0066651_106000462	3300006031	Soil	SYTCTRPNVQASFNNVAVATGAAGDKTVRAQDTAPVTAKAPFKPKPIPKVVSHKKPKATG
Ga0066696_103488352	3300006032	Soil	TCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG
Ga0066696_109338251	3300006032	Soil	RANVTASFNNVAVATGHAGPTTVTAQDTAPVTAKAAPLKPKKVTRVTPKVVSHKKPKATG
Ga0066656_106918871	3300006034	Soil	KCTRPNVTKSFTNVAVVTGKAGGTTLTAQDTAPVTAKKPFVPKVVPKVVSHKKPKATG*
Ga0075417_105172701	3300006049	Populus Rhizosphere	SYTCTRANVTASFNNVAVATGHAGPTTVTAQDTAPVTAKAAPLKPKKVTKVTPKVVSHSKPKATG*
Ga0074057_107860661	3300006605	Soil	ANVRSSFNNVAVASGTAGDKTVTAQDTAPVTAKAPFVPKKVKPKVVSHKKPKATG*
Ga0066659_105089601	3300006797	Soil	VAVATGTAGSTTVTAQDTAPVTARAALKPKTVTKKVVKPKVVSHRKPKATG*
Ga0066659_115390462	3300006797	Soil	SFNNVAVVTGTAGSTTVTAQDTAPVTAKAPLVPKKVVPKVVSHKKPKATG*
Ga0075429_1009826102	3300006880	Populus Rhizosphere	NPGQSVSYTCTRPNVQASFNNVAVATGTAGDKTVSAQDTAPVTAKAPFKPKPVPKVVSHKKPKTTG*
Ga0079219_101261813	3300006954	Agricultural Soil	FDNVAVATGHAGSTTVTAQDTAHVNAKAPFVPPKPKVVSHKKPKTTS*
Ga0075435_1000070601	3300007076	Populus Rhizosphere	ANVTASFNNVAVATGTAGDKTVTAQDTAPVTAKKPFVPKKVVPKVVSHKKPKATG*
Ga0075435_1002094702	3300007076	Populus Rhizosphere	ANVTSNFTNVAVASGTAGGTTVTAQDTAPVTAKAAALKPKTVTKIKPKVVSHRKPKATG*
Ga0066710_1021729122	3300009012	Grasslands Soil	RANVRSSFTNVAVATGTAGSTKVTAQDTAPVTAKKPFVPPKVVPKVVSHKKPKATG
Ga0066710_1026099511	3300009012	Grasslands Soil	NVTASFNNVAVVTGKAGATTVTAQDMAPVTAKAAALKPPPTVKPKVVSHKKPKATG
Ga0105245_103549541	3300009098	Miscanthus Rhizosphere	SYTSTRPDVRASFSNVAVVAGTAADNTDTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG*
Ga0066709_1045631782	3300009137	Grasslands Soil	ASVSYKCTRPNVRSSFTNVAVVTGKAGGTTLTAQDTAPVTAKKAFVPKKVVPKVVSHKKPKATG*
Ga0075423_111795961	3300009162	Populus Rhizosphere	PGQSVSYKCTRPNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0105249_126939972	3300009553	Switchgrass Rhizosphere	PGASTSYTCTRPDVRSSFNNVAVVAGTAGDKTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG*
Ga0126374_115513341	3300009792	Tropical Forest Soil	KANVTASFNNVAVATGHAGATTVTAQDTAPVTAKAAPLKPKKVVKVTPKVVSHRKPKATG
Ga0134064_103075282	3300010325	Grasslands Soil	APGQAVSYTCTRPNVTASFNDVAVVTGKAGATTVTAEDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG*
Ga0134062_100940112	3300010337	Grasslands Soil	ASFNNVAVATGHAGPTTVTAQDTAPVTAKAAPLKPKKVTRVTPKVVSHKKPKATG*
Ga0134062_101470821	3300010337	Grasslands Soil	YTCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG*
Ga0134062_102446801	3300010337	Grasslands Soil	STSYTCTRPNVQASFNNVAVATGAAGDKTVRAQDTAPVTAKAAPLKPKKVTKVTPKVVSHKKPKATG*
Ga0134128_113578861	3300010373	Terrestrial Soil	TSYTCTKANVRSSFKNVAVASGTAGDKTVTAQDTAPVTAKAPFVPKKVKPKVVSHKKPKTTG*
Ga0134124_121661572	3300010397	Terrestrial Soil	VSYKCTRPNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0137376_103257593	3300012208	Vadose Zone Soil	GQSVSYKCTRPNVTSSFTNVAVVTGKAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG*
Ga0137376_115208301	3300012208	Vadose Zone Soil	CTKANVRSSFKNVAVASGTAGDKTVSAQDTAPVTAKAPFVPKKVKPKVVSHKKPKATG*
Ga0137376_118065431	3300012208	Vadose Zone Soil	ANFTNVAVASDTAGGTTVTAQDTAPVTAKAAALQPKTATKVKPKVVHRKPKATG*
Ga0137378_105135712	3300012210	Vadose Zone Soil	LNPGQAVSYTCTRANVTASFNNVAVATGHAGPSTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG*
Ga0137377_112995732	3300012211	Vadose Zone Soil	TSSFTKVAVASGAAGGTTVKAQDTATVTAKAKPFVPPKVKPKVVSHKKPRATG*
Ga0137371_105542891	3300012356	Vadose Zone Soil	NVRSDFTNVATATGTAGTQTVTAKDTAPVNAVKALTPPPTVKPKVVSHKKPKATG*
Ga0134023_10431011	3300012385	Grasslands Soil	SSFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKRPKATG*
Ga0137373_109098432	3300012532	Vadose Zone Soil	FTNVAVVTGKAGGQTLTAQDTAPVTAKAPFVPKVVPKVVSHKKPKATG*
Ga0137404_102425391	3300012929	Vadose Zone Soil	QSVSYKCTRPNVTSSFTNVAVVTGKAGSTTLTAQDTAPVTARAPFVPKVVPKVVSHKKPKATG*
Ga0137407_117058522	3300012930	Vadose Zone Soil	SVSYKCTRPNVTSSFTNVAVVTGKAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG*
Ga0137407_118242662	3300012930	Vadose Zone Soil	IGDLAAGASVSYSCTRPNVRSDFTNVATATGTAGTQTVTAKDTAPVNAVAPFVPKKVKPKVVSHKKPKATG*
Ga0164302_109286691	3300012961	Soil	SYTCTRANVTSSFTNVAVASGTAGGTTVKAQDSAPVTAKAKPFVPPKVKPKVVSHKKPKATG*
Ga0134077_103287301	3300012972	Grasslands Soil	CTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKKPFVPKKVVPKVVPKVVSHKKPKATG*
Ga0134087_104770152	3300012977	Grasslands Soil	ADFDNVAIATGHAGSTTVTAQDTAHVNAKAPFVPKKPKIVSHKKPKTTG*
Ga0164307_110416011	3300012987	Soil	RSDFTNVATATGTAGTQTVTAKDTAPVNAVTPFVPPKVKPKVVSHKKPKATG*
Ga0134073_100089641	3300015356	Grasslands Soil	GTLAPGQAVSYTCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG*
Ga0134073_100179513	3300015356	Grasslands Soil	GQAVSYTCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKRPKATG*
Ga0134089_103460391	3300015358	Grasslands Soil	GQSVSYKCTLPDVTKSFTNVAVVTGKAGGTTLTAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG*
Ga0134112_102170001	3300017656	Grasslands Soil	TSYTCTRANVTASFNNVAVATGHAGPTTVTAQDTAQVTAKAAPLKPKKVTRVTPKVVSHKKPKATG
Ga0190266_111561691	3300017965	Soil	NCNKTIGTLAPGQSVSYKCTRPNVTKSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG
Ga0184605_101979812	3300018027	Groundwater Sediment	YTCTRPNVQSSFNNVAVVTGTAGEKTVIAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG
Ga0184618_103309881	3300018071	Groundwater Sediment	PNVRSSFQNVAVATGTAGTTTVTARDTAPVTAKAALTPPKVVPKVVSHKKPKATG
Ga0066662_112203681	3300018468	Grasslands Soil	PGASVSYKCTRPNVTKSFTNVAVVTGKAGGTTLTAQDTAPVTAKKPFVPKVVPKVVSHKKPKATG
Ga0173481_104917571	3300019356	Soil	NVTANFTNVAVASGTAGGTTVTAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG
Ga0193729_10498821	3300019887	Soil	DLAAGASVSYSCTRPNVRSDFTNVATATGTAGTQTVTAKDTAPVNAVAPFVPKKVKPKVVSHKKPKATG
Ga0193750_10967521	3300021413	Soil	VTSSFTNVAVASGTAGGTTVKAQDTAPVTAKAAFRPKTVKKVKPKVVSHRKPKATG
Ga0207685_103581982	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	PGQSVSYKCTRPNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG
Ga0207663_106322572	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RANVTSSFTNVAVASGTAGGTTVKAQDSAPVTAKAKPFVPPKVKPKVVSHRKPKATG
Ga0207662_111442862	3300025918	Switchgrass Rhizosphere	ALSPNCNKTIGTLAPGQSVSYKCTRPNVTKSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG
Ga0207702_122374271	3300026078	Corn Rhizosphere	SSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG
Ga0209234_11589171	3300026295	Grasslands Soil	FTNVAVVTGKAGGTTLTAQDTAPVTAKAAPLKPKKVVKPKVVSHRKPKATG
Ga0209155_10581743	3300026316	Soil	CTRANVTASFNNVAVATGHAGPTTVTAQDTAPVTAKAAPLKPKKVTKVTPKVVSHKKPKATG
Ga0209472_13034662	3300026323	Soil	SYTCTRPNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPFVPKKVVPKVVSHKKPKATG
Ga0209375_12305181	3300026329	Soil	VTASFNNVAVATGHAGPTTVTAQDTAPVTAKAAPLKPKKVTKVTPKVVSHKKPKATG
Ga0209473_10345321	3300026330	Soil	PNVTASFNNVAVVTGKAGATTVTAQDTAPVTAKAKPLTPPTVKPKVVSHKKPKATG
Ga0209159_12647311	3300026343	Soil	RPDVTKSFTNVAVVTGKAGGTTLTAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG
Ga0209156_104547911	3300026547	Soil	TRANVRSSFTNVAVATGTAGSTKVTAQDTAPVTARKAFVPKKVKPKVVSHKKPKATG
Ga0209474_105999771	3300026550	Soil	GTLAPGASVSYTCKRANVQASFNNVAVATGTAGSTTVTARDTAPVTAKAPFVPKKVVPKVVSHKKPKATG
Ga0207428_101349312	3300027907	Populus Rhizosphere	VTSSFNNVAVATGHAGPTTVTAQDTAPVTAKAAPLKPKKVTRVTPKVVSHRKPKATG
Ga0209382_116885191	3300027909	Populus Rhizosphere	CTRPNVQASFNNVAVATGTAGDKTVSAQDTAPVTAKAPFKPKPVPKVVSHKKPKTTG
Ga0268265_113790141	3300028380	Switchgrass Rhizosphere	ANFTNVAVASGTAGGTTVTAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG
Ga0307322_100068661	3300028710	Soil	TRPNVTKSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG
Ga0307307_100143735	3300028718	Soil	TKSFTNVAVVTGKAGSTTLTAQDTAPVTARAPFVPKVVPKVVSHKKPKATG
Ga0307290_103669221	3300028791	Soil	RSSFQNVAVASGTAGTTTVTARDTAPVTAKAALTPPKVVPKVVSHKKPKATG
Ga0307299_100681411	3300028793	Soil	TLAPGASTSYTCTRPNVQSSFNNVAVVTGTAGEKTVIAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG
Ga0307299_103499452	3300028793	Soil	ASVSYSCTRPNVRSSFQNVAVASGTAGTTTVTARDTAPVTARAPLTPPKVVPKVVSHKKPKATG
Ga0307296_106621752	3300028819	Soil	SYSCTRPNVRSSFQNVAVASGTAGTTTVTARDTAPVTARAPLTPPKVVPKVVSHKKPKAT
Ga0307312_101834441	3300028828	Soil	FNNVAVVAGTAGDKTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG
Ga0307289_100745883	3300028875	Soil	CTRPDVRSSFNNVAVVAGTAGDKTVTAQDTAPVTAKKAFVPPKVVPKVVSHKKPKATG
Ga0307300_101466662	3300028880	Soil	NVTNSFTNVGVVTGQAGSTTLTAQDSARVTARAPFVPKVVPKVVSHKKPKATG
Ga0170824_1069680841	3300031231	Forest Soil	LGASTSYTCTKANVRSSFNNVAVASGTAGDKTVSAQDTAPVTAKAPFVPKKVKPKVVSHKKPKATG
Ga0170820_169532872	3300031446	Forest Soil	FNNVAVASGTAGDKTVSAQDTAPVTAKAPFVPKKVKPKVVSHKKPKATG
Ga0170819_120496741	3300031469	Forest Soil	VRSSFNNVAVASGTAGDKTVSAQDTAPVTAKAPFVPKKVKPKVVSHKKPKATG
Ga0310887_101007553	3300031547	Soil	GNLAPGQSVSYKCTRPNVQSSFTNVAVVTGKAGGTTVTDQDTAPVTAKAPFVPKVVPKVVSHKKPKATG
Ga0308175_1012221461	3300031938	Soil	QSVSYQCTRPNVTASFTNVAVVTGKAGGTTLTAQDTAPVTAKKPFVPKVVPKVVSHKKPKATG
Ga0307471_1024066252	3300032180	Hardwood Forest Soil	GASTSYTCTKANVRSSFKNVAVASGTAGDKTVTAQDTAPVTAKAPFVPKKVKPKVVSHKKPKATG
Ga0310810_105289692	3300033412	Soil	RANVTANFTNVAVASGTAGGTTVTAQDTAPVTAKAAALQPKTVTKVKPKVVSHRKPKATG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084189

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences