Metagenome Family F084170

Overview

Basic Information

• Family ID: F084170
• Family Type: Metagenome
• Number of Sequences: 112
• Average Sequence Length: 43 residues
• Representative Sequence: MFAKWTDDMVREYFDTHWNATLHEICALSGRTKADVKRVLMGG
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 89.38 %
• % of genes near scaffold ends (potentially truncated): 22.32 %
• % of genes from short scaffolds (< 2000 bps): 75.00 %
• Associated GOLD sequencing projects: 68
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (41.071 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (43.750 % of family members)
• Environment Ontology (ENVO): Unclassified (61.607 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (78.571 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 38.03%
  β-sheet: 0.00%
  Coil/Unstructured: 61.97%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03237	Terminase_6N	3.57
PF14090	HTH_39	1.79
PF00589	Phage_integrase	1.79
PF05367	Phage_endo_I	0.89
PF02511	Thy1	0.89
PF01381	HTH_3	0.89
PF07486	Hydrolase_2	0.89
PF13884	Peptidase_S74	0.89
PF06067	DUF932	0.89
PF05127	Helicase_RecD	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.89
COG1444	tRNA(Met) C34 N-acetyltransferase TmcA	Translation, ribosomal structure and biogenesis [J]	0.89
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.93 %
Unclassified	root	N/A	41.07 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	10.71 %
Unclassified	root	N/A	41.07 %
Viruses	superkingdom	All Organisms → Viruses	48.21 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.82 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	20.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Unclassified	root	N/A	41.07 %

Level 4

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	20.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.36 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.68 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.89 %
Unclassified	root	N/A	41.07 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.89 %
Unclassified	root	N/A	41.07 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	20.54 %

Level 6

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20.54 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	0.89 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Unclassified	root	N/A	41.07 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	8.04 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	2.68 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Unclassified	root	N/A	41.07 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	8.93 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	2.68 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1.79 %
Roseobacter phage CRP-2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-2	5.36 %
Roseobacter phage CRP-6	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6	0.89 %
Roseobacter phage CRP-9	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-9	0.89 %
Unclassified	root	N/A	41.07 %
unclassified Nitrosopumilaceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae	0.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
Zobellviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae	8.04 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Cobavirinae	subfamily	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae	8.04 %
Nitrosopumilaceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	0.89 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1.79 %
Roseobacter phage CRP-2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-2	5.36 %
Roseobacter phage CRP-6	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6	0.89 %
Roseobacter phage CRP-9	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-9	0.89 %
Unclassified	root	N/A	41.07 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Nitrosopumilaceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	0.89 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1.79 %
Roseobacter phage CRP-2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-2	5.36 %
Roseobacter phage CRP-6	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6	0.89 %
Roseobacter phage CRP-9	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-9	0.89 %
Siovirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus	7.14 %
Unclassified	root	N/A	41.07 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
Veravirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Veravirus	0.89 %

Level 11

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Nitrosopumilaceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	0.89 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1.79 %
Roseobacter phage CRP-2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-2	5.36 %
Roseobacter phage CRP-6	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6	0.89 %
Roseobacter phage CRP-9	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-9	0.89 %
Siovirus germanense	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus → Siovirus germanense	0.89 %
Unclassified	root	N/A	41.07 %
unclassified Siovirus	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus → unclassified Siovirus	0.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
Veravirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Veravirus	0.89 %

Level 12

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Lentibacter virus vB_LenP_ICBM2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus → unclassified Siovirus → Lentibacter virus vB_LenP_ICBM2	0.89 %
Nitrosopumilaceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	0.89 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	2.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.68 %
Roseobacter phage CRP-13	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1.79 %
Roseobacter phage CRP-2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-2	5.36 %
Roseobacter phage CRP-6	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6	0.89 %
Roseobacter phage CRP-9	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-9	0.89 %
Siovirus germanense	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus → Siovirus germanense	0.89 %
Unclassified	root	N/A	41.07 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.68 %
Veravirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Veravirus	0.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300024520|Ga0255047_10014581	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-6	4282
3300000949|BBAY94_10039559	All Organisms → Viruses → Predicted Viral	1317
3300000949|BBAY94_10115672	Not Available	733
3300003617|JGI26082J51739_10108760	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	686
3300003908|JGI26085J52751_1024145	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus	862
3300004829|Ga0068515_118500	Not Available	871
3300004829|Ga0068515_121093	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	814
3300005588|Ga0070728_10038772	All Organisms → cellular organisms → Bacteria	3206
3300005590|Ga0070727_10096322	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1705
3300005747|Ga0076924_1066043	All Organisms → Viruses → Predicted Viral	1324

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Class

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	1.79%
Aquatic	Environmental → Aquatic	96.43%
Terrestrial	Environmental → Terrestrial	1.79%

Category

Habitat	Taxonomy	Distribution
Green Algae	Host-Associated → Algae → Green Algae	1.79%
Marine	Environmental → Aquatic → Marine	89.29%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	7.14%
Soil	Environmental → Terrestrial → Soil	1.79%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	53.57%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	1.79%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.89%
Inlet	Environmental → Aquatic → Marine → Inlet	0.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	16.07%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.79%
Oceanic	Environmental → Aquatic → Marine → Oceanic	5.36%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.68%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	6.25%
Sediment	Environmental → Aquatic → Marine → Sediment	0.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified	8.04%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%

Subtype

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	5.36%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	6.25%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	5.36%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.79%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	48.21%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	8.04%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	43.75%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.79%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.89%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	5.36%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.68%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	3.57%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.68%
Hypersaline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water	0.89%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	1.79%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.57%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.79%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.89%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	4.46%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.89%
Marine Water	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water	1.79%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.89%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.68%
Pond Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil	1.79%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.79%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	4.46%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	6.25%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	1.79%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.89%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.89%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.89%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.89%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000949	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94	Host-Associated
3300003617	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA	Environmental
3300003908	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA	Environmental
3300004829	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs	Environmental
3300005588	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1	Environmental
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental
3300005747	Seawater microbial communities from Vineyard Sound, MA, USA - control T14	Environmental
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BBAY94_100395596	3300000949	Macroalgal Surface	MKWTDDMIREYFDSHWSATLHEICALSGRTKKEVK
BBAY94_101156721	3300000949	Macroalgal Surface	MKAWTDEMVKEYFDTHWDVTIHQLCALSMRSKDDIKRILMER*
JGI26082J51739_101087601	3300003617	Marine	MFAKWTDDMVRDYFDTRWNATLHEICALSGRTKADVKRVLMGG*
JGI26085J52751_10241452	3300003908	Marine	MTFAKWTDDMVRDYFDTHWNATLHEICALSGRTKADLKRVLMEG*
Ga0068515_1185002	3300004829	Marine Water	MTFAKWSDDMIREYFDTHWNATIHEISALSGRTKADIKRVLMGES*
Ga0068515_1210932	3300004829	Marine Water	MALEDETMKPWTDDMVREYFDTHWDVTIHQICALSMRSKADVKRILMEG*
Ga0070728_100387726	3300005588	Marine Sediment	MKWSDDMIREYFDTHWNATLHEICALSGRTKAEVKRALMRESA*
Ga0070727_100963224	3300005590	Marine Sediment	MKWSDDMIREYFDTHWNATLHEICALSGRTRADVKRALMRGNA*
Ga0076924_10660434	3300005747	Marine	MLIWTDDMVREYFDTHLNATLHEICALSGRNKADVKRVLMEE*
Ga0070743_101004524	3300005941	Estuarine	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRSKADVKQVLMEG*
Ga0075474_100103923	3300006025	Aqueous	MFAKWTDEMIREYFDSHWDATIHEVCALSGRTKAEVKRALMQGSKT*
Ga0075474_100417124	3300006025	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRVLMEQE*
Ga0075474_100871545	3300006025	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRILMEQE*
Ga0075474_102284643	3300006025	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRIL
Ga0075462_100827382	3300006027	Aqueous	MLIWTDDMVREYFDTHLNATLHEICALSGRNRADVKRVLMEE*
Ga0075466_11303632	3300006029	Aqueous	MTMATWTDDMIIEYFDTHINATIHEICALSGRRRADVKRVLMGG*
Ga0075466_11671142	3300006029	Aqueous	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKSDVKRALMEG*
Ga0075461_100835561	3300006637	Aqueous	MFAKWTDEMIREYFDSHWDATIHEVCALSGRTKAEVK
Ga0070749_100178793	3300006802	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMEG*
Ga0070749_101784024	3300006802	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVQ
Ga0070749_104047472	3300006802	Aqueous	MKAWTDEMVKEYFDTHWDVTIHQLCALSMRSKADVKRILMER*
Ga0070749_104900512	3300006802	Aqueous	MAKWTDDMVREYFDTHWNATIHQICALSGRSKADVKRVLMEG*
Ga0070754_101458943	3300006810	Aqueous	MFAKWTDDMIREYFDSHWDATIHEVCALSGRTKAEVKRALMQGSKT*
Ga0070754_101606982	3300006810	Aqueous	MFAKWTDDMIREYFDTHLNATIHEICALSGRTKAEVKRALMQGSKT*
Ga0070754_102667692	3300006810	Aqueous	MFAKWTDEMIREYFDSHWNATIHEICALSGRTKADVKRALMVQSK*
Ga0070754_103299701	3300006810	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMGG*
Ga0075481_101809222	3300006868	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRILMEQG*
Ga0080109_1052322	3300007023	Hypersaline Water	MSHWTDDMIREYFDTHWNATIHEICALSGRSKAEVKRALMQK*
Ga0070745_11122033	3300007344	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMGD*
Ga0070752_10049451	3300007345	Aqueous	NVMFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMGG*
Ga0102934_10568382	3300007537	Pond Soil	MNRWTDDMIREYFDTHWNATIHEICALSGRTKAEVKRALMQGAG*
Ga0099851_10446405	3300007538	Aqueous	MKKWTDDMVREYFDTHWNVTIHTLCALSGRSKADVKAILLEA*
Ga0099851_11070114	3300007538	Aqueous	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKTDVKSVLMEGTDT*
Ga0099851_13580672	3300007538	Aqueous	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKLDVKSVLMEGADT*
Ga0099848_10413484	3300007541	Aqueous	MFAKWNDDMIREYFDTHWNATIHEICALSGRTKADVKRALMVQSK*
Ga0099848_13128661	3300007541	Aqueous	MTFVKWTDDMVRDYFDTHWNATLHEICALSGRTKADVKRV
Ga0099848_13408502	3300007541	Aqueous	MTFAKWTDDMVRDYFDTHWNATLHEICALSGRTKADVKRVLMEG*
Ga0099846_10159992	3300007542	Aqueous	MNIWTDDMIREYFDSNWNVTIHQICALSGRTKADVKAVLMGGK*
Ga0102945_10116123	3300007609	Pond Water	MTFAKWTDDMVREYFDTHWNATLHEICALSGRTKVDIKRVLMEG*
Ga0075480_105207733	3300008012	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRILM
Ga0102831_12224622	3300008996	Estuarine	MKVWTDEMVREYFDTHWNATLHDICALSGRTKADVKRVLMGG*
Ga0102814_101489612	3300009079	Estuarine	MFAKWTDDMIIEYFDTRPFCKWEATIHEICALSGRARTDVKRVLMKG*
Ga0102815_100354563	3300009080	Estuarine	MPFAKWTDDMIIEYFDTRPFCKWEATIHEICALSGRARTDVKRVLMKG*
Ga0114918_105994661	3300009149	Deep Subsurface	MAHWTDEMIREYFDTHWNATIHEICALSGRTRAEVKRV
Ga0114915_10294875	3300009428	Deep Ocean	MFAKWTDDMVRDYFDTHWNATLHEISALSGRTKTDVKLVLMKG*
Ga0115562_10537114	3300009434	Pelagic Marine	MLVWTDDMVREYFDTHLNATLHEICALSGRNKADVKRVLMEE*
Ga0115559_10988372	3300009438	Pelagic Marine	MTFAKWTDDMVREYFDTHWNATLHEICALSGRTKADLKRVLMEG*
Ga0129324_101802783	3300010368	Freshwater To Marine Saline Gradient	LIWTDDMVREYFDTHLNATLHEICALSGRNKADVKRVLMEE*
Ga0129324_104109621	3300010368	Freshwater To Marine Saline Gradient	DMVREYFDTHWNATLHEICALSGRSKIDVKRALMEG*
Ga0136587_10562942	3300011188	Saline Lake	MARWTDDMIKESFDTNWNATVHQVSALSGRNKADVKRILMGGN*
Ga0136587_11946561	3300011188	Saline Lake	VREYFDTNWDATVHQISALSGRNKADIKRILMGGK*
Ga0136560_10694251	3300012269	Saline Lake	RWSDDMVREYFDTNWDATVHQISALSGRNKADIKRILMGGK*
Ga0160423_104854593	3300012920	Surface Seawater	MKYRLIWTDEMVKEYFDSHLNTTIHEICALSGRTKDEVKNILMEKV*
Ga0129327_101121851	3300013010	Freshwater To Marine Saline Gradient	MLIWTDDMVREYFDTHLNATLHEICALSGRNKADVKRV
Ga0181565_103631761	3300017818	Salt Marsh	EMVREYFDTHWNATIHEICALSGRTKADVKRVLMEQE
Ga0181577_101263254	3300017951	Salt Marsh	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRVLMEQE
Ga0181560_101093773	3300018413	Salt Marsh	MKAWTDEMVKEYFDTHWDVTIHQLCALSMRSKADVKRILMER
Ga0181559_101432663	3300018415	Salt Marsh	MKAWTDEMVKEYFDTHWDVTIHQLCALSMRSKDDIKRILMER
Ga0181563_1001213212	3300018420	Salt Marsh	MFAKWTDDMVREYFDTHLNATLHEICALSGRSKIDVKRALMEG
Ga0181563_100434794	3300018420	Salt Marsh	MKKWTDQMICEYFDTHWYATIHTICALSGRTKSDVKRVLMGGK
Ga0181591_108696494	3300018424	Salt Marsh	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRVLM
Ga0206677_102583774	3300021085	Seawater	MEIWTDNMVREYFDTHWNVTIHELCTLSGLKKSDVKRALMKG
Ga0213861_100663163	3300021378	Seawater	MLKQWTDDMVKEYFDTHWGATIHHICALSGRKRADVVAILLGGK
Ga0222718_100403843	3300021958	Estuarine Water	MTLAKWTDDMVRDYFDTHWNATLHEICALSGRTKADVKRVLMEG
Ga0222718_100537212	3300021958	Estuarine Water	MVKWTDDMVREYFDTHWNATLHEVCAYSGRTKADVKRVLMEG
Ga0222715_105704571	3300021960	Estuarine Water	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVK
Ga0222719_106540672	3300021964	Estuarine Water	MNKIEFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMGK
Ga0196883_10373172	3300022050	Aqueous	MFAKWTDEMIREYFDSHWDATIHEVCALSGRTKAEVKRALMQGSKT
Ga0212023_10052304	3300022061	Aqueous	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKSDVKRALMEG
Ga0196903_10245002	3300022169	Aqueous	MLIWTDDMVREYFDTHLNATLHEICALSGRNKADVKRVLMEE
Ga0212031_10192243	3300022176	Aqueous	MTFAKWTDDMVRDYFDTHWNATLHEICALSGRTKADVKRVLMEG
Ga0196891_100201013	3300022183	Aqueous	MLIWTDDMVREYFDTHLNATLHEICALSGRNRADVKRVLMEE
Ga0196905_10233512	3300022198	Aqueous	MFAKWTDDMVREYFDTHWNATLHEICALSGRTKADVKRVLMGG
Ga0196901_10209878	3300022200	Aqueous	MNIWTDDMIREYFDSNWNVTIHQICALSGRTKADVKAVLMGGK
Ga0196901_10907103	3300022200	Aqueous	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKTDVKSVLMEGTDT
Ga0196901_11369282	3300022200	Aqueous	MKKWTDDMVREYFDTHWNVTIHTLCALSGRSKADVKAILLEA
Ga0224504_100563623	3300022308	Sediment	MFAKWTDDMVRDYFDTHWNATLHEICALSGRTKADVKRVLMEG
Ga0228670_10267105	3300024319	Seawater	MFAKWTDDMVRDYFDTHWNATLHEISALSGRTKADVKRVLMEG
Ga0244775_100461006	3300024346	Estuarine	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRSKADVKQVLMEG
Ga0244775_102932683	3300024346	Estuarine	MKVWTDEMVREYFDTHWNATLHDICALSGRTKADVKRVLMGG
(restricted) Ga0255047_1001458112	3300024520	Seawater	MKWTDDMLKEYFDTHWNATIHEICALSGRTKADIKRILMGGK
Ga0208814_10153204	3300025276	Deep Ocean	MFAKWTDDMVRDYFDTHWNATLHEICALSGRTKTDVKLVLMKG
Ga0208303_10015117	3300025543	Aqueous	MMKWSDEIVKEYFDTHWNVTIHQLCALSGRTKVDVKRILMESK
Ga0208149_10190603	3300025610	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRILMEQE
Ga0208149_11174191	3300025610	Aqueous	TRARHNKMKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRVLMEQE
Ga0209405_11132062	3300025620	Pelagic Marine	MLVWTDDMVREYFDTHLNATLHEICALSGRNKADVKRVLMEE
Ga0208643_10715093	3300025645	Aqueous	MTMATWTDDMIIEYFDTHINATIHEICALSGRRRADVKRVLMGG
Ga0208134_11665641	3300025652	Aqueous	DDMVREYFDTHWNATLHEICALSGRSKVDVKRALMEG
Ga0208428_11091523	3300025653	Aqueous	MKRWTDEMVREYFDTHWNATIHEICALSGRTKADVKRILMEQG
Ga0208898_10084661	3300025671	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMGG
Ga0208019_11986552	3300025687	Aqueous	MFAKWTDDMVREYFDTHWNATLHEICALSGRTKADVKRALMGG
Ga0208899_10231951	3300025759	Aqueous	MFAKWTDEMIREYFDSHWDATIHEVCALSGRTKAEVKRALMQG
Ga0208899_12160803	3300025759	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLLEG
Ga0209137_10359885	3300025767	Marine	MFAKWTDDMVRDYFDTRWNATLHEICALSGRTKADVKRVLMGG
Ga0208645_10852852	3300025853	Aqueous	MFAKWTDEMIREYFDSHWNATIHEICALSGRTKADVKRALMVQSK
Ga0208644_10408091	3300025889	Aqueous	MFAKWTDEMVREYFDTHWNATLHEICALSGRTKADVKRVLMEG
Ga0209953_10265922	3300026097	Pond Water	MTFAKWTDDMVREYFDTHWNATLHEICALSGRTKVDIKRVLMEG
Ga0209925_12423931	3300026197	Pond Soil	MNRWTDDMIREYFDTHWNATIHEICALSGRTKAEVKRALMQGAG
Ga0208166_10302271	3300027215	Estuarine	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKSDVKSV
Ga0208167_10573773	3300027219	Estuarine	MFAKWTDDMVRDYFDTHWNATLHEVCALSGRNKSD
Ga0209037_10086556	3300027612	Marine	MTFAKWTDDMVRDYFDTHWNATLHEICALSGRTKADLKRVLMEG
Ga0208305_101196222	3300027753	Estuarine	MFAKWTDDMIIEYFDTRPFCKWEATIHEICALSGRARTDVKRVLMKG
Ga0209379_100324113	3300027758	Marine Sediment	MKWSDDMIREYFDTHWNATLHEICALSGRTRADVKRA
Ga0209692_100070586	3300027828	Marine Sediment	MKWSDDMIREYFDTHWNATLHEICALSGRTKAEVKRALMRESA
Ga0209271_102963722	3300027845	Marine Sediment	MKWSDDMIREYFDTHWNATLHEICALSGRTRADVKRAL
Ga0209536_1021393292	3300027917	Marine Sediment	MFAKWTDDMIREYFDSHWDATIHEICALSGRTKAEVKRALMQGSKT
Ga0306872_1177032	3300028361	Saline Lake	MARWTDDMIKESFDTNWNATVHQVSALSGRNKADVKRILMGGN
Ga0306871_10610681	3300028370	Saline Lake	MVREYFDTNWDATVHQISALSGRNKADIKRILMGGK
Ga0307996_10016032	3300031589	Marine	MFAKWKDDMVRDYFDTHWNATLHEICALSGRTKADVKRVLMKG
Ga0302130_100339312	3300031700	Marine	MKKWTDDMVRDYFDAHLNTTLHELGAYSGRTRADLKRILMAPQKPRD
Ga0316202_101231064	3300032277	Microbial Mat	MNMATWTDDMIIEYFDTHINATIHEICALSGRRRADVKRVLMGG
Ga0348335_117589_93_233	3300034374	Aqueous	MFAKWTDDMIREYFDTHLNATIHEICALSGRTKAEVKRALMQGSKT