NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F084063

Metagenome / Metatranscriptome Family F084063

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084063
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 39 residues
Representative Sequence MGSLALLQSLKESVLGQASVKAIYGEPISAHEKTIIPVA
Number of Associated Samples 93
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 94.64 %
% of genes from short scaffolds (< 2000 bps) 86.61 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (89.286 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(14.286 % of family members)
Environment Ontology (ENVO) Unclassified
(28.571 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.107 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1INPhiseqgaiiFebDRAFT_1014658543
2JGI1027J12803_1040647962
3Ga0062389_1034583451
4Ga0058899_101877171
5Ga0066672_110061812
6Ga0066690_101784983
7Ga0070711_1004555602
8Ga0070735_107220572
9Ga0070731_104799893
10Ga0070733_104079651
11Ga0070761_108982641
12Ga0068859_1026840502
13Ga0068864_1015803362
14Ga0070764_108748521
15Ga0068861_1001872741
16Ga0079222_113658371
17Ga0079222_126211942
18Ga0066659_103713331
19Ga0066660_106825221
20Ga0073928_110637812
21Ga0099791_104899151
22Ga0099828_119247041
23Ga0105250_100362411
24Ga0066709_1045260491
25Ga0105241_122339691
26Ga0126374_111559252
27Ga0126373_129635241
28Ga0126378_131474713
29Ga0126383_132843692
30Ga0126383_133797512
31Ga0137388_119324361
32Ga0137383_102603263
33Ga0137363_100513731
34Ga0137363_115759832
35Ga0137380_100453876
36Ga0137387_104455211
37Ga0137361_105332294
38Ga0137396_106182222
39Ga0164305_110751832
40Ga0157371_101107311
41Ga0157374_1000680213
42Ga0157374_105397491
43Ga0157374_120845381
44Ga0182018_102515542
45Ga0187824_101266521
46Ga0187783_104585021
47Ga0187861_103469561
48Ga0187857_105056102
49Ga0187863_101226821
50Ga0187883_101493092
51Ga0187883_102471351
52Ga0187859_100419011
53Ga0187765_113939852
54Ga0193728_12251692
55Ga0210407_100656882
56Ga0210403_100068928
57Ga0210401_101429652
58Ga0210401_110430311
59Ga0210400_114218293
60Ga0210396_106172583
61Ga0210388_113020762
62Ga0210389_112068232
63Ga0210389_113667942
64Ga0210389_114050161
65Ga0210387_100962541
66Ga0210391_115780242
67Ga0210402_118666251
68Ga0210409_112542582
69Ga0126371_101323223
70Ga0126371_113834803
71Ga0224541_10288621
72Ga0212123_101101051
73Ga0212123_103582181
74Ga0212123_108919201
75Ga0224544_10624291
76Ga0224547_10291791
77Ga0207692_108250881
78Ga0207699_111109591
79Ga0207700_113299143
80Ga0207709_112181191
81Ga0207691_108343122
82Ga0207658_101575284
83Ga0207658_103912571
84Ga0207641_100112209
85Ga0207641_116626772
86Ga0209375_10504734
87Ga0209690_11654971
88Ga0179587_110252412
89Ga0208859_10173641
90Ga0209106_10625912
91Ga0209167_102190411
92Ga0209579_100016331
93Ga0209579_104348971
94Ga0209624_102485071
95Ga0209526_104683941
96Ga0265338_111294571
97Ga0308309_103547243
98Ga0308309_105164171
99Ga0302324_1006861642
100Ga0310915_112637892
101Ga0307476_101952911
102Ga0307469_101341603
103Ga0307473_105025311
104Ga0307473_111690322
105Ga0307478_100812462
106Ga0307479_102865011
107Ga0307479_103954681
108Ga0335074_100065379
109Ga0335074_115324242
110Ga0335072_104088332
111Ga0335077_109112941
112Ga0310914_109509573
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 31.34%    β-sheet: 8.96%    Coil/Unstructured: 59.70%
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Variant

5101520253035MGSLALLQSLKESVLGQASVKAIYGEPISAHEKTIIPVASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
89.3%10.7%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Freshwater Sediment
Iron-Sulfur Acid Spring
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Palsa
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Palsa
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
5.4%3.6%9.8%6.2%5.4%7.1%14.3%6.2%3.6%4.5%3.6%3.6%4.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10146585433300000364SoilMSSLALLQSLKESILTQANVKAVYGEPIAAQGKTVVPVAKI
JGI1027J12803_10406479623300000955SoilMGSLALLQALKESVLGQANVNAIYGEPISAHEKTIIPVAK
Ga0062389_10345834513300004092Bog Forest SoilMGSVALLQSLKESIFSHVGVKAIYGEPISAQGKTVIPVAKLMY
Ga0058899_1018771713300004631Forest SoilMGSLAILQSLKESVLGQASVKAIYGEPISAQGKTVIPVAKVMYA
Ga0066672_1100618123300005167SoilMGSLALLQSLKESILGQANVKAIYGEPISAHDKTIIPVAK
Ga0066690_1017849833300005177SoilMGSLALLQSLRDSVLTQASVKTIYGEPIAAQGKTIIPVAR
Ga0070711_10045556023300005439Corn, Switchgrass And Miscanthus RhizosphereMGSLALLQSLKESILGQANVKAIYGEPISAHEKTIIPVAKIMY
Ga0070735_1072205723300005534Surface SoilMSSVAILQSLKESIAAANVKAVYGEPIAAQGKTIIPVAKI
Ga0070731_1047998933300005538Surface SoilMSSVAILQSLTESILTANVKAVFGEPIAAQGKTVIPVAKIIFGY
Ga0070733_1040796513300005541Surface SoilMSTLAVLESLKESILSQASVKAIYGEPISAHGRTV
Ga0070761_1089826413300005591SoilMSSLALLQSLKESILLQANVKAISGEPIVAHGKTVIPAEKIMYP
Ga0068859_10268405023300005617Switchgrass RhizosphereMGSLALLQSLKESILGQASVKTIYGEPILSQGKTI
Ga0068864_10158033623300005618Switchgrass RhizosphereMGSLALLQYLKESVLGQANVKAIYGEPISAHEKTIIPVAKIMY
Ga0070764_1087485213300005712SoilMSSLAILQSLKESILTANVKAVYGEPIAAQGKTIIPVAK
Ga0068861_10018727413300005719Switchgrass RhizosphereMGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTIIPVAKIM
Ga0079222_1136583713300006755Agricultural SoilMSSLALLQSLKDTIITQANVKSVYGEPIAAQGKTIVPVAKII
Ga0079222_1262119423300006755Agricultural SoilMSSLAILQSLKESILTEANVKTIYGEPIDAQGKTIIPVAKIVF
Ga0066659_1037133313300006797SoilMSTQALLQSLKESILSQASVKAIYGEPIAAHGKTVIQVARIM
Ga0066660_1068252213300006800SoilMGSLALLQSLRDSVLTQASVKTIYGEPIAAQGKTIIP
Ga0073928_1106378123300006893Iron-Sulfur Acid SpringVPYFGVSEMSTQALLQSLKESVLSQASVKALYGEPISAHGKTVIPVAK*
Ga0099791_1048991513300007255Vadose Zone SoilMFSFKEFPMGSLALLQSLKESILGQASVKAIYGEPISAHEK
Ga0099828_1192470413300009089Vadose Zone SoilMGSLALLQSLKDSVLTQASVKTIYGEPIAAQGKTIIPVA
Ga0105250_1003624113300009092Switchgrass RhizosphereMGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTII
Ga0066709_10452604913300009137Grasslands SoilMSSLALLQSLKESILTQANVKAVYGEPIAAQGQTVVPVA
Ga0105241_1223396913300009174Corn RhizosphereMGSLALLQTLKDSVLSQASVKAIYGEPISAQGKTIIPVARIT
Ga0126374_1115592523300009792Tropical Forest SoilMGSLAILQSLKESVLGQANVKAIYGEPISAHEKTIIPVAKIM*
Ga0126373_1296352413300010048Tropical Forest SoilMGSLALLQSLKESVLSQANVKAIYGEPVSAHDKTIIPVARI
Ga0126378_1314747133300010361Tropical Forest SoilMGSLALLQSLKESVLGQASVKAIYGEPISAHEKTI
Ga0126383_1328436923300010398Tropical Forest SoilMGSIALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVA
Ga0126383_1337975123300010398Tropical Forest SoilMEVPMGSVALLQSVKDGILSQASVKAIYGDPVAAHGKT
Ga0137388_1193243613300012189Vadose Zone SoilMGSVMLLQSLKDGILSQASVKAIYGEPIVAQGKTIIPV
Ga0137383_1026032633300012199Vadose Zone SoilMSTLAVLQSLKESILSQASVKAIYGEPIAAQGKTVIPIAKI
Ga0137363_1005137313300012202Vadose Zone SoilMSALALLQSLKESILSQASVKAIYGEPIVAQGKTVIPV
Ga0137363_1157598323300012202Vadose Zone SoilMGSLALLQSLKESILGQANVNAIYGEPISAHDKTIIP
Ga0137380_1004538763300012206Vadose Zone SoilMSTHALLQSLKESILSQASVKAIYGEPIAAQGRTVIRLPK*
Ga0137387_1044552113300012349Vadose Zone SoilMSTLAVLQSLKESILSQASVKPIYGEPNAAQGKTVIPVAKIMY
Ga0137361_1053322943300012362Vadose Zone SoilMSALALLQSLKESILSQASVKAIYGEPIVAQGKTVIPVAKI
Ga0137396_1061822223300012918Vadose Zone SoilMGSVALLQSLKESILGQASVKTIYGEPVSTHGKTIIPV
Ga0164305_1107518323300012989SoilMSSSLALLQSLKESILTQANVKAVYGEPITTQGKTIVP
Ga0157371_1011073113300013102Corn RhizosphereMGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTIIPVAKIMY
Ga0157374_10006802133300013296Miscanthus RhizosphereMGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVAKI
Ga0157374_1053974913300013296Miscanthus RhizosphereVGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVAKI
Ga0157374_1208453813300013296Miscanthus RhizosphereMGSLALLQSLKESILGQASVKTIYGEPILSQGKTII
Ga0182018_1025155423300014489PalsaMGSVALLQSLKESILGQVSVKTIYGEPIPAHGKTII
Ga0187824_1012665213300017927Freshwater SedimentMSSVAILQSLKESIVSANVKAVYGEPVVAQGKTIIPVAKIM
Ga0187783_1045850213300017970Tropical PeatlandMGALSLLQSLKESVLTQASVKSIYGEPIAAQGKTVIPV
Ga0187861_1034695613300018020PeatlandMSTQALLQSLKESILSQASVKAIYGEPISANGKTVIPV
Ga0187857_1050561023300018026PeatlandMSTQALLQSLKESILSQASVKAIYGEPISAHGKTVIP
Ga0187863_1012268213300018034PeatlandMGSVALLQSLKEGILGQASVKTIYGEAVSAHGKTIIPV
Ga0187883_1014930923300018037PeatlandMSTQALLQSLKESILSQASVKAIYGEPISAHGKTVI
Ga0187883_1024713513300018037PeatlandMSTLAILQSLKESILSQASVKAIYGEPISAHGKTVIPVARIMY
Ga0187859_1004190113300018047PeatlandVSSVALLQSLKDGILGQVSVKTIYGEPVSAHGKTIIPV
Ga0187765_1139398523300018060Tropical PeatlandMSSVAILQSLKESIVTANVKAIYGEPIAAQGKTVIPVAKIIY
Ga0193728_122516923300019890SoilMSTQALLQSLKESILSQASVKAIYGEPISAQGKTVIPIAK
Ga0210407_1006568823300020579SoilMSSLALLQSLKDSILGQASVKAIYGEPISAHGKTVVP
Ga0210403_1000689283300020580SoilMGSVALLQSLKESILGQASVKTIYGEPISAHGKTIIPV
Ga0210401_1014296523300020583SoilMGSLAILQSLKESVLGQASVKAIYGEPISAQGKTVI
Ga0210401_1104303113300020583SoilMSSLALLQSLKDSVLGQASVKAIYGEPISAHGKTV
Ga0210400_1142182933300021170SoilMSSPPPLQSLKESILSQANVKAIYGEPITAHFKNGHP
Ga0210396_1061725833300021180SoilMGSVALLQSLRDSILGQAGVKAVYGEPISAQGKTVIPVAK
Ga0210388_1130207623300021181SoilMGSLALLQSLKESVTSQASVKTLYGEPISAHEKTIIPVAKIM
Ga0210389_1120682323300021404SoilMGSLALLQSLKESVTSQASVKTLYGEPISAHEKTIIPVAK
Ga0210389_1136679423300021404SoilMGSVALLQSLKESILSGAGVKAIYGEPITAQGKTVIPV
Ga0210389_1140501613300021404SoilMGSVALLQSLKDGILGQANVKTIYGEPIPANGKTIIPVA
Ga0210387_1009625413300021405SoilMALLQSLKESILSQASAKAIYGEPVSALGKTVIPVAKIMYG
Ga0210391_1157802423300021433SoilMSTLAVLQSLKESVLSQASVKAIYGEPISAHGKTVVP
Ga0210402_1186662513300021478SoilMSALTILQSLKESILSQANVKAIYGDPITAHGKTV
Ga0210409_1125425823300021559SoilMSTQPVLQSLKESVLCQASVKALYGEPVLANGKTVIPVAKIA
Ga0126371_1013232233300021560Tropical Forest SoilMGSLALLQSLKESVLGQASVKAIYGEPISAHEKTIIPVA
Ga0126371_1138348033300021560Tropical Forest SoilMSSLALLQSLKDSILTQANVKSVYGEPIAAQGKTIIPVAKI
Ga0224541_102886213300022521SoilMSTQALLQSLKESILSQASVKAIYGEPISAHGKTVIPVA
Ga0212123_1011010513300022557Iron-Sulfur Acid SpringVGSQALLQSLKEGILSQASVKAIYGEPVSIQGKTVI
Ga0212123_1035821813300022557Iron-Sulfur Acid SpringMSTLAVLQSLKESVLSQASVKAIYGEPISAHGRTVVP
Ga0212123_1089192013300022557Iron-Sulfur Acid SpringMSSLALLQSLKESILSQANVKAIYGEPIAAHGKTVIPVAKS
Ga0224544_106242913300023250SoilMGSVALLQSLKDSIVGQAGVKTVFGEPISAQGKTIIPIA
Ga0224547_102917913300023255SoilMSTLPLLQSLKESVLSQASVKAIYGEPISAQGKTVIPV
Ga0207692_1082508813300025898Corn, Switchgrass And Miscanthus RhizosphereMGSLALLQSLKESVLAQANVKAIYGEPISAHEKTIIPVAK
Ga0207699_1111095913300025906Corn, Switchgrass And Miscanthus RhizosphereMGSLALLQSLKESVLAQANVKAIYGEPISAHEKTIIPVA
Ga0207700_1132991433300025928Corn, Switchgrass And Miscanthus RhizosphereMSRLALLQSLKESILSQASVKAIYGEPIAAQGKTIIPVAR
Ga0207709_1121811913300025935Miscanthus RhizosphereMGSLALLQSLKESILGQASVKTIYGEPILSQGKTIIPV
Ga0207691_1083431223300025940Miscanthus RhizosphereMGSLALLQYLKESVLGQANVKAIYGEPISAHEKTIIPVAKIM
Ga0207658_1015752843300025986Switchgrass RhizosphereMGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTIIPV
Ga0207658_1039125713300025986Switchgrass RhizosphereMGSLALLQSLKESILGQASVKTICGEPISSPGKTIIPVA
Ga0207641_1001122093300026088Switchgrass RhizosphereMGSLALLQSLKESILGQASVKTIYGEPISSPGKTIIPVAKI
Ga0207641_1166267723300026088Switchgrass RhizosphereVGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVA
Ga0209375_105047343300026329SoilMTSVALLQSLKESFLTQADVKAVYGEPITAQGKTVVPVARIIY
Ga0209690_116549713300026524SoilMGSLALLQSLRDSVLTQASVKTIYGEPIAAQGKPIIPV
Ga0179587_1102524123300026557Vadose Zone SoilMSSLALLQSLKESILSQANVKAIYGEPISAYGKTIIP
Ga0208859_101736413300027069Forest SoilMGSLALLQSLKDSVLGQANVKAIYGEPVSAHEKTI
Ga0209106_106259123300027616Forest SoilVGSLALLQSLKESILGQASVKTIYGEPISAHGKTII
Ga0209167_1021904113300027867Surface SoilMSSLAFLQSLKDSVLGQASVKAIYGEPISAHGKTVIP
Ga0209579_1000163313300027869Surface SoilMGALALLQSLKESVLSQASVKSIYGEPISAQGKTV
Ga0209579_1043489713300027869Surface SoilMGTLTVLQSLKDNILSQASVKAIYGEPISANGKTV
Ga0209624_1024850713300027895Forest SoilMSTQAILQSLKESILSQASVKAIYGEPISAHGKTVVPVAKIMYG
Ga0209526_1046839413300028047Forest SoilMSTLSLLQSLKESILSQASVKAIYGEPISAHGKTVVPIAKIMY
Ga0265338_1112945713300028800RhizosphereMGSVALLQSLKDGILGQASVKAIYGEPIPAHGKTIVPVAKIL
Ga0308309_1035472433300028906SoilMGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVAK
Ga0308309_1051641713300028906SoilMSALTILQSLKESILSQANVKAIYGDPITAHGKTVI
Ga0302324_10068616423300031236PalsaVGSVALLQSLKEGILGQVSVKTIYGEPIPAHGKTIIPV
Ga0310915_1126378923300031573SoilMGTFALLQSLKESILADANVKAIYGEPISAHEKTIIPVARIMY
Ga0307476_1019529113300031715Hardwood Forest SoilMSSLALLQSLKESILSQANVKAVYGEPIAAQGKTIIPVAKII
Ga0307469_1013416033300031720Hardwood Forest SoilMGSLALLQSLKESVLSQANVKAIYGEPISAHEKTIIPVAKM
Ga0307473_1050253113300031820Hardwood Forest SoilMGSLALLQSLKESVLSQANVKAIYGEPISAHEKTIIPVAKMMY
Ga0307473_1116903223300031820Hardwood Forest SoilMGSLALLQSLKDSVLGQASVRTIYGEPISAHGKTIIPV
Ga0307478_1008124623300031823Hardwood Forest SoilMSSLALLQSLKESILSQANVKAIYGEPIVAQAKTVIPVAKIMYG
Ga0307479_1028650113300031962Hardwood Forest SoilMGSLALLQSLKDSVLGQANVKAIYGEPVSAHEKTII
Ga0307479_1039546813300031962Hardwood Forest SoilMGSLALMQSLKESVLTQANVKTIYGEPIQAQGKTIIPVAKI
Ga0335074_1000653793300032895SoilMGSAALLQSLKEGILGQARVKAIYGEPITPQGKTIIPVAKLVYG
Ga0335074_1153242423300032895SoilMGSVALLQSLKESILSGAGVKAIYGEPITAQGKTIVP
Ga0335072_1040883323300032898SoilMSSVAILQSLKDSTLAANVKSVYGEPITAQGKTVIPV
Ga0335077_1091129413300033158SoilMGALAVLQSLRDGILGQATVKTIYGEPIAANGKTVI
Ga0310914_1095095733300033289SoilMEVLKMSGQALLQSLKESFVTQANVKAVYGEPITARG


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