Basic Information | |
---|---|
Family ID | F084063 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 112 |
Average Sequence Length | 39 residues |
Representative Sequence | MGSLALLQSLKESVLGQASVKAIYGEPISAHEKTIIPVA |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 94.64 % |
% of genes from short scaffolds (< 2000 bps) | 86.61 % |
Associated GOLD sequencing projects | 90 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.37 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (89.286 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.286 % of family members) |
Environment Ontology (ENVO) | Unclassified (28.571 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.107 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 31.34% β-sheet: 8.96% Coil/Unstructured: 59.70% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Peatland Bog Forest Soil Freshwater Sediment Iron-Sulfur Acid Spring Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Agricultural Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Tropical Peatland Palsa Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Palsa Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1014658543 | 3300000364 | Soil | MSSLALLQSLKESILTQANVKAVYGEPIAAQGKTVVPVAKI |
JGI1027J12803_1040647962 | 3300000955 | Soil | MGSLALLQALKESVLGQANVNAIYGEPISAHEKTIIPVAK |
Ga0062389_1034583451 | 3300004092 | Bog Forest Soil | MGSVALLQSLKESIFSHVGVKAIYGEPISAQGKTVIPVAKLMY |
Ga0058899_101877171 | 3300004631 | Forest Soil | MGSLAILQSLKESVLGQASVKAIYGEPISAQGKTVIPVAKVMYA |
Ga0066672_110061812 | 3300005167 | Soil | MGSLALLQSLKESILGQANVKAIYGEPISAHDKTIIPVAK |
Ga0066690_101784983 | 3300005177 | Soil | MGSLALLQSLRDSVLTQASVKTIYGEPIAAQGKTIIPVAR |
Ga0070711_1004555602 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MGSLALLQSLKESILGQANVKAIYGEPISAHEKTIIPVAKIMY |
Ga0070735_107220572 | 3300005534 | Surface Soil | MSSVAILQSLKESIAAANVKAVYGEPIAAQGKTIIPVAKI |
Ga0070731_104799893 | 3300005538 | Surface Soil | MSSVAILQSLTESILTANVKAVFGEPIAAQGKTVIPVAKIIFGY |
Ga0070733_104079651 | 3300005541 | Surface Soil | MSTLAVLESLKESILSQASVKAIYGEPISAHGRTV |
Ga0070761_108982641 | 3300005591 | Soil | MSSLALLQSLKESILLQANVKAISGEPIVAHGKTVIPAEKIMYP |
Ga0068859_1026840502 | 3300005617 | Switchgrass Rhizosphere | MGSLALLQSLKESILGQASVKTIYGEPILSQGKTI |
Ga0068864_1015803362 | 3300005618 | Switchgrass Rhizosphere | MGSLALLQYLKESVLGQANVKAIYGEPISAHEKTIIPVAKIMY |
Ga0070764_108748521 | 3300005712 | Soil | MSSLAILQSLKESILTANVKAVYGEPIAAQGKTIIPVAK |
Ga0068861_1001872741 | 3300005719 | Switchgrass Rhizosphere | MGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTIIPVAKIM |
Ga0079222_113658371 | 3300006755 | Agricultural Soil | MSSLALLQSLKDTIITQANVKSVYGEPIAAQGKTIVPVAKII |
Ga0079222_126211942 | 3300006755 | Agricultural Soil | MSSLAILQSLKESILTEANVKTIYGEPIDAQGKTIIPVAKIVF |
Ga0066659_103713331 | 3300006797 | Soil | MSTQALLQSLKESILSQASVKAIYGEPIAAHGKTVIQVARIM |
Ga0066660_106825221 | 3300006800 | Soil | MGSLALLQSLRDSVLTQASVKTIYGEPIAAQGKTIIP |
Ga0073928_110637812 | 3300006893 | Iron-Sulfur Acid Spring | VPYFGVSEMSTQALLQSLKESVLSQASVKALYGEPISAHGKTVIPVAK* |
Ga0099791_104899151 | 3300007255 | Vadose Zone Soil | MFSFKEFPMGSLALLQSLKESILGQASVKAIYGEPISAHEK |
Ga0099828_119247041 | 3300009089 | Vadose Zone Soil | MGSLALLQSLKDSVLTQASVKTIYGEPIAAQGKTIIPVA |
Ga0105250_100362411 | 3300009092 | Switchgrass Rhizosphere | MGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTII |
Ga0066709_1045260491 | 3300009137 | Grasslands Soil | MSSLALLQSLKESILTQANVKAVYGEPIAAQGQTVVPVA |
Ga0105241_122339691 | 3300009174 | Corn Rhizosphere | MGSLALLQTLKDSVLSQASVKAIYGEPISAQGKTIIPVARIT |
Ga0126374_111559252 | 3300009792 | Tropical Forest Soil | MGSLAILQSLKESVLGQANVKAIYGEPISAHEKTIIPVAKIM* |
Ga0126373_129635241 | 3300010048 | Tropical Forest Soil | MGSLALLQSLKESVLSQANVKAIYGEPVSAHDKTIIPVARI |
Ga0126378_131474713 | 3300010361 | Tropical Forest Soil | MGSLALLQSLKESVLGQASVKAIYGEPISAHEKTI |
Ga0126383_132843692 | 3300010398 | Tropical Forest Soil | MGSIALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVA |
Ga0126383_133797512 | 3300010398 | Tropical Forest Soil | MEVPMGSVALLQSVKDGILSQASVKAIYGDPVAAHGKT |
Ga0137388_119324361 | 3300012189 | Vadose Zone Soil | MGSVMLLQSLKDGILSQASVKAIYGEPIVAQGKTIIPV |
Ga0137383_102603263 | 3300012199 | Vadose Zone Soil | MSTLAVLQSLKESILSQASVKAIYGEPIAAQGKTVIPIAKI |
Ga0137363_100513731 | 3300012202 | Vadose Zone Soil | MSALALLQSLKESILSQASVKAIYGEPIVAQGKTVIPV |
Ga0137363_115759832 | 3300012202 | Vadose Zone Soil | MGSLALLQSLKESILGQANVNAIYGEPISAHDKTIIP |
Ga0137380_100453876 | 3300012206 | Vadose Zone Soil | MSTHALLQSLKESILSQASVKAIYGEPIAAQGRTVIRLPK* |
Ga0137387_104455211 | 3300012349 | Vadose Zone Soil | MSTLAVLQSLKESILSQASVKPIYGEPNAAQGKTVIPVAKIMY |
Ga0137361_105332294 | 3300012362 | Vadose Zone Soil | MSALALLQSLKESILSQASVKAIYGEPIVAQGKTVIPVAKI |
Ga0137396_106182222 | 3300012918 | Vadose Zone Soil | MGSVALLQSLKESILGQASVKTIYGEPVSTHGKTIIPV |
Ga0164305_110751832 | 3300012989 | Soil | MSSSLALLQSLKESILTQANVKAVYGEPITTQGKTIVP |
Ga0157371_101107311 | 3300013102 | Corn Rhizosphere | MGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTIIPVAKIMY |
Ga0157374_1000680213 | 3300013296 | Miscanthus Rhizosphere | MGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVAKI |
Ga0157374_105397491 | 3300013296 | Miscanthus Rhizosphere | VGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVAKI |
Ga0157374_120845381 | 3300013296 | Miscanthus Rhizosphere | MGSLALLQSLKESILGQASVKTIYGEPILSQGKTII |
Ga0182018_102515542 | 3300014489 | Palsa | MGSVALLQSLKESILGQVSVKTIYGEPIPAHGKTII |
Ga0187824_101266521 | 3300017927 | Freshwater Sediment | MSSVAILQSLKESIVSANVKAVYGEPVVAQGKTIIPVAKIM |
Ga0187783_104585021 | 3300017970 | Tropical Peatland | MGALSLLQSLKESVLTQASVKSIYGEPIAAQGKTVIPV |
Ga0187861_103469561 | 3300018020 | Peatland | MSTQALLQSLKESILSQASVKAIYGEPISANGKTVIPV |
Ga0187857_105056102 | 3300018026 | Peatland | MSTQALLQSLKESILSQASVKAIYGEPISAHGKTVIP |
Ga0187863_101226821 | 3300018034 | Peatland | MGSVALLQSLKEGILGQASVKTIYGEAVSAHGKTIIPV |
Ga0187883_101493092 | 3300018037 | Peatland | MSTQALLQSLKESILSQASVKAIYGEPISAHGKTVI |
Ga0187883_102471351 | 3300018037 | Peatland | MSTLAILQSLKESILSQASVKAIYGEPISAHGKTVIPVARIMY |
Ga0187859_100419011 | 3300018047 | Peatland | VSSVALLQSLKDGILGQVSVKTIYGEPVSAHGKTIIPV |
Ga0187765_113939852 | 3300018060 | Tropical Peatland | MSSVAILQSLKESIVTANVKAIYGEPIAAQGKTVIPVAKIIY |
Ga0193728_12251692 | 3300019890 | Soil | MSTQALLQSLKESILSQASVKAIYGEPISAQGKTVIPIAK |
Ga0210407_100656882 | 3300020579 | Soil | MSSLALLQSLKDSILGQASVKAIYGEPISAHGKTVVP |
Ga0210403_100068928 | 3300020580 | Soil | MGSVALLQSLKESILGQASVKTIYGEPISAHGKTIIPV |
Ga0210401_101429652 | 3300020583 | Soil | MGSLAILQSLKESVLGQASVKAIYGEPISAQGKTVI |
Ga0210401_110430311 | 3300020583 | Soil | MSSLALLQSLKDSVLGQASVKAIYGEPISAHGKTV |
Ga0210400_114218293 | 3300021170 | Soil | MSSPPPLQSLKESILSQANVKAIYGEPITAHFKNGHP |
Ga0210396_106172583 | 3300021180 | Soil | MGSVALLQSLRDSILGQAGVKAVYGEPISAQGKTVIPVAK |
Ga0210388_113020762 | 3300021181 | Soil | MGSLALLQSLKESVTSQASVKTLYGEPISAHEKTIIPVAKIM |
Ga0210389_112068232 | 3300021404 | Soil | MGSLALLQSLKESVTSQASVKTLYGEPISAHEKTIIPVAK |
Ga0210389_113667942 | 3300021404 | Soil | MGSVALLQSLKESILSGAGVKAIYGEPITAQGKTVIPV |
Ga0210389_114050161 | 3300021404 | Soil | MGSVALLQSLKDGILGQANVKTIYGEPIPANGKTIIPVA |
Ga0210387_100962541 | 3300021405 | Soil | MALLQSLKESILSQASAKAIYGEPVSALGKTVIPVAKIMYG |
Ga0210391_115780242 | 3300021433 | Soil | MSTLAVLQSLKESVLSQASVKAIYGEPISAHGKTVVP |
Ga0210402_118666251 | 3300021478 | Soil | MSALTILQSLKESILSQANVKAIYGDPITAHGKTV |
Ga0210409_112542582 | 3300021559 | Soil | MSTQPVLQSLKESVLCQASVKALYGEPVLANGKTVIPVAKIA |
Ga0126371_101323223 | 3300021560 | Tropical Forest Soil | MGSLALLQSLKESVLGQASVKAIYGEPISAHEKTIIPVA |
Ga0126371_113834803 | 3300021560 | Tropical Forest Soil | MSSLALLQSLKDSILTQANVKSVYGEPIAAQGKTIIPVAKI |
Ga0224541_10288621 | 3300022521 | Soil | MSTQALLQSLKESILSQASVKAIYGEPISAHGKTVIPVA |
Ga0212123_101101051 | 3300022557 | Iron-Sulfur Acid Spring | VGSQALLQSLKEGILSQASVKAIYGEPVSIQGKTVI |
Ga0212123_103582181 | 3300022557 | Iron-Sulfur Acid Spring | MSTLAVLQSLKESVLSQASVKAIYGEPISAHGRTVVP |
Ga0212123_108919201 | 3300022557 | Iron-Sulfur Acid Spring | MSSLALLQSLKESILSQANVKAIYGEPIAAHGKTVIPVAKS |
Ga0224544_10624291 | 3300023250 | Soil | MGSVALLQSLKDSIVGQAGVKTVFGEPISAQGKTIIPIA |
Ga0224547_10291791 | 3300023255 | Soil | MSTLPLLQSLKESVLSQASVKAIYGEPISAQGKTVIPV |
Ga0207692_108250881 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MGSLALLQSLKESVLAQANVKAIYGEPISAHEKTIIPVAK |
Ga0207699_111109591 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MGSLALLQSLKESVLAQANVKAIYGEPISAHEKTIIPVA |
Ga0207700_113299143 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MSRLALLQSLKESILSQASVKAIYGEPIAAQGKTIIPVAR |
Ga0207709_112181191 | 3300025935 | Miscanthus Rhizosphere | MGSLALLQSLKESILGQASVKTIYGEPILSQGKTIIPV |
Ga0207691_108343122 | 3300025940 | Miscanthus Rhizosphere | MGSLALLQYLKESVLGQANVKAIYGEPISAHEKTIIPVAKIM |
Ga0207658_101575284 | 3300025986 | Switchgrass Rhizosphere | MGSLALLQSLKDSVLGQANVKTIYGEPISAHEKTIIPV |
Ga0207658_103912571 | 3300025986 | Switchgrass Rhizosphere | MGSLALLQSLKESILGQASVKTICGEPISSPGKTIIPVA |
Ga0207641_100112209 | 3300026088 | Switchgrass Rhizosphere | MGSLALLQSLKESILGQASVKTIYGEPISSPGKTIIPVAKI |
Ga0207641_116626772 | 3300026088 | Switchgrass Rhizosphere | VGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVA |
Ga0209375_10504734 | 3300026329 | Soil | MTSVALLQSLKESFLTQADVKAVYGEPITAQGKTVVPVARIIY |
Ga0209690_11654971 | 3300026524 | Soil | MGSLALLQSLRDSVLTQASVKTIYGEPIAAQGKPIIPV |
Ga0179587_110252412 | 3300026557 | Vadose Zone Soil | MSSLALLQSLKESILSQANVKAIYGEPISAYGKTIIP |
Ga0208859_10173641 | 3300027069 | Forest Soil | MGSLALLQSLKDSVLGQANVKAIYGEPVSAHEKTI |
Ga0209106_10625912 | 3300027616 | Forest Soil | VGSLALLQSLKESILGQASVKTIYGEPISAHGKTII |
Ga0209167_102190411 | 3300027867 | Surface Soil | MSSLAFLQSLKDSVLGQASVKAIYGEPISAHGKTVIP |
Ga0209579_100016331 | 3300027869 | Surface Soil | MGALALLQSLKESVLSQASVKSIYGEPISAQGKTV |
Ga0209579_104348971 | 3300027869 | Surface Soil | MGTLTVLQSLKDNILSQASVKAIYGEPISANGKTV |
Ga0209624_102485071 | 3300027895 | Forest Soil | MSTQAILQSLKESILSQASVKAIYGEPISAHGKTVVPVAKIMYG |
Ga0209526_104683941 | 3300028047 | Forest Soil | MSTLSLLQSLKESILSQASVKAIYGEPISAHGKTVVPIAKIMY |
Ga0265338_111294571 | 3300028800 | Rhizosphere | MGSVALLQSLKDGILGQASVKAIYGEPIPAHGKTIVPVAKIL |
Ga0308309_103547243 | 3300028906 | Soil | MGSLALLQSLKESVLGQANVKAIYGEPISAHEKTIIPVAK |
Ga0308309_105164171 | 3300028906 | Soil | MSALTILQSLKESILSQANVKAIYGDPITAHGKTVI |
Ga0302324_1006861642 | 3300031236 | Palsa | VGSVALLQSLKEGILGQVSVKTIYGEPIPAHGKTIIPV |
Ga0310915_112637892 | 3300031573 | Soil | MGTFALLQSLKESILADANVKAIYGEPISAHEKTIIPVARIMY |
Ga0307476_101952911 | 3300031715 | Hardwood Forest Soil | MSSLALLQSLKESILSQANVKAVYGEPIAAQGKTIIPVAKII |
Ga0307469_101341603 | 3300031720 | Hardwood Forest Soil | MGSLALLQSLKESVLSQANVKAIYGEPISAHEKTIIPVAKM |
Ga0307473_105025311 | 3300031820 | Hardwood Forest Soil | MGSLALLQSLKESVLSQANVKAIYGEPISAHEKTIIPVAKMMY |
Ga0307473_111690322 | 3300031820 | Hardwood Forest Soil | MGSLALLQSLKDSVLGQASVRTIYGEPISAHGKTIIPV |
Ga0307478_100812462 | 3300031823 | Hardwood Forest Soil | MSSLALLQSLKESILSQANVKAIYGEPIVAQAKTVIPVAKIMYG |
Ga0307479_102865011 | 3300031962 | Hardwood Forest Soil | MGSLALLQSLKDSVLGQANVKAIYGEPVSAHEKTII |
Ga0307479_103954681 | 3300031962 | Hardwood Forest Soil | MGSLALMQSLKESVLTQANVKTIYGEPIQAQGKTIIPVAKI |
Ga0335074_100065379 | 3300032895 | Soil | MGSAALLQSLKEGILGQARVKAIYGEPITPQGKTIIPVAKLVYG |
Ga0335074_115324242 | 3300032895 | Soil | MGSVALLQSLKESILSGAGVKAIYGEPITAQGKTIVP |
Ga0335072_104088332 | 3300032898 | Soil | MSSVAILQSLKDSTLAANVKSVYGEPITAQGKTVIPV |
Ga0335077_109112941 | 3300033158 | Soil | MGALAVLQSLRDGILGQATVKTIYGEPIAANGKTVI |
Ga0310914_109509573 | 3300033289 | Soil | MEVLKMSGQALLQSLKESFVTQANVKAVYGEPITARG |
⦗Top⦘ |