Metagenome / Metatranscriptome Family F084054

Basic Information
Family ID	F084054
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	43 residues
Representative Sequence	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Number of Associated Samples	85
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.96 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (91.964 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.536 % of family members)
Environment Ontology (ENVO)	Unclassified (55.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.571 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1Ga0066707_101904181 2Ga0066903_1026982472 3Ga0070717_102889892 4Ga0070717_121061631 5Ga0079222_123346281 6Ga0099795_101992282 7Ga0099830_111538532 8Ga0099828_100526981 9Ga0114945_102997452 10Ga0126373_129142491 11Ga0126373_129775051 12Ga0126376_129688621 13Ga0126378_130163472 14Ga0126378_134516701 15Ga0126377_123025941 16Ga0126377_135365852 17Ga0126379_101196354 18Ga0126381_1010392412 19Ga0126381_1010845734 20Ga0150983_128234832 21Ga0137363_103092263 22Ga0137362_111071742 23Ga0137384_110454801 24Ga0137360_114534281 25Ga0137404_109238961 26Ga0182036_103835131 27Ga0182041_114993923 28Ga0182041_123254711 29Ga0182033_108038793 30Ga0182033_117692102 31Ga0182035_120675061 32Ga0182034_114771582 33Ga0182037_103925351 34Ga0182037_114955351 35Ga0182037_116539171 36Ga0182039_121787142 37Ga0182038_112457221 38Ga0210403_104336283 39Ga0210403_106630311 40Ga0210403_107336851 41Ga0210399_108842001 42Ga0210401_106123662 43Ga0210406_113776761 44Ga0210408_103440731 45Ga0210408_105248361 46Ga0210389_104840611 47Ga0210384_102432121 48Ga0210384_104669552 49Ga0210384_108857593 50Ga0210402_117357022 51Ga0126371_132426531 52Ga0209648_101361434 53Ga0209528_11270611 54Ga0209106_10346521 55Ga0209526_100195131 56Ga0209526_108328601 57Ga0222749_101172863 58Ga0170823_162639001 59Ga0170824_1187851371 60Ga0318516_107707721 61Ga0318538_100015061 62Ga0318538_100847601 63Ga0318571_102402242 64Ga0318573_107194762 65Ga0318515_106979841 66Ga0318561_108150881 67Ga0318572_102244263 68Ga0318572_103966131 69Ga0310686_1076531371 70Ga0306917_110001701 71Ga0318500_100180781 72Ga0318501_104622421 73Ga0318509_103185941 74Ga0318546_105111172 75Ga0318508_12235291 76Ga0318557_102028893 77Ga0318557_103764061 78Ga0318576_102610441 79Ga0318565_102849892 80Ga0318568_109003271 81Ga0318527_105301811 82Ga0306919_102244652 83Ga0318536_101922442 84Ga0318522_102926192 85Ga0306923_100796196 86Ga0306921_120249221 87Ga0310912_103418251 88Ga0310912_108173022 89Ga0310916_114034182 90Ga0310913_101261551 91Ga0310913_104213073 92Ga0310913_107615693 93Ga0310909_100472895 94Ga0306926_109962053 95Ga0306922_101551884 96Ga0318549_101903121 97Ga0318545_100128924 98Ga0318532_102124422 99Ga0318533_107795691 100Ga0318533_109040751 101Ga0318510_101236913 102Ga0318513_102079311 103Ga0318553_106487592 104Ga0306924_105486193 105Ga0306924_115331302 106Ga0306924_118456061 107Ga0306924_122253912 108Ga0307472_1016514061 109Ga0306920_1015221202 110Ga0306920_1032651711 111Ga0306920_1039873571 112Ga0373959_0218136_3_140
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1Ga0066707_101904181 2Ga0066903_1026982472 3Ga0114945_102997452 4Ga0126378_130163472 5Ga0126377_123025941 6Ga0182041_123254711 7Ga0209648_101361434 8Ga0318565_102849892
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42 1Ga0210403_104336283 2Ga0099795_101992282 3Ga0099828_100526981 4Ga0114945_102997452 5Ga0126373_129775051 6Ga0126377_123025941 7Ga0126381_1010845734 8Ga0182041_123254711 9Ga0182037_116539171 10Ga0210401_106123662 11Ga0210408_103440731 12Ga0210402_117357022 13Ga0318516_107707721 14Ga0318538_100015061 15Ga0318561_108150881 16Ga0318572_102244263 17Ga0310686_1076531371 18Ga0318500_100180781 19Ga0318509_103185941 20Ga0318557_102028893 21Ga0318576_102610441 22Ga0318565_102849892 23Ga0318549_101903121 24Ga0306924_115331302 25Ga0306920_1015221202
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13561	adh_short_C2	10.71
PF01053	Cys_Met_Meta_PP	4.46
PF16326	ABC_tran_CTD	3.57
PF11154	DUF2934	1.79
PF00313	CSD	1.79
PF13495	Phage_int_SAM_4	0.89
PF13924	Lipocalin_5	0.89
PF00689	Cation_ATPase_C	0.89
PF08241	Methyltransf_11	0.89
PF13751	DDE_Tnp_1_6	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	4.46
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	4.46
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	4.46
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	4.46
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	4.46
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	4.46
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	4.46
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	4.46
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	4.46
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	4.46

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.96 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.96 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.96 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.86 %
Unclassified	root	N/A	8.04 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	8.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.61 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.57 %
Unclassified	root	N/A	8.04 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	49.11 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.11 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.11 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3.57 %
Unclassified	root	N/A	8.04 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005556\|Ga0066707_10190418	Not Available	1319	Open in IMG/M
3300005764\|Ga0066903_102698247	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	963	Open in IMG/M
3300006028\|Ga0070717_10288989	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300006028\|Ga0070717_12106163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300006755\|Ga0079222_12334628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300007788\|Ga0099795_10199228	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300009088\|Ga0099830_11153853	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300009089\|Ga0099828_10052698	All Organisms → cellular organisms → Bacteria	3383	Open in IMG/M
3300009444\|Ga0114945_10299745	Not Available	946	Open in IMG/M
3300010048\|Ga0126373_12914249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M

Showing 1 to 10 of 112 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.89%
Plants	Host-Associated → Plants	0.89%
Terrestrial	Environmental → Terrestrial	98.21%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil	98.21%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.07%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	70.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.86%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.14%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M

Showing 1 to 10 of 85 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066707_101904181	3300005556	Soil	HAYRLDGVHQGYIGGILLEKFYNRGWVDYVLLVLTLHRAASR*
Ga0066903_1026982472	3300005764	Tropical Forest Soil	DEECDRLLRAYKRDGAHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRIASR*
Ga0070717_102889892	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAANR*
Ga0070717_121061631	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR*
Ga0079222_123346281	3300006755	Agricultural Soil	LLHAYHPDRVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0099795_101992282	3300007788	Vadose Zone Soil	DEECDRLLHAYHLDGVHQGYIGGMLLEKFYNREWVDYILLVLTLHGAASR*
Ga0099830_111538532	3300009088	Vadose Zone Soil	LDGVHRGYIGGMLLEKFYNRGWVDYALLVLTLHRAASR*
Ga0099828_100526981	3300009089	Vadose Zone Soil	HLDGVHQGYVGGMLLEKFYNRGWVDYALLVLTLHRAASR*
Ga0114945_102997452	3300009444	Thermal Springs	LLQAYQQHGAHPGYIDGMLLEKFYNRQWVDYVLMVLR*
Ga0126373_129142491	3300010048	Tropical Forest Soil	AYHLDAVHQGYIGGMLLEKFYNRGWVDYVLLVLTPRRAASR*
Ga0126373_129775051	3300010048	Tropical Forest Soil	RPDEECDRLLHAYQLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPYPSSSR*
Ga0126376_129688621	3300010359	Tropical Forest Soil	RLAHAYQLHGAHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0126378_130163472	3300010361	Tropical Forest Soil	DGVHRGYIGGMLLEKFYNRGWVDYVLLALTPHRAA*
Ga0126378_134516701	3300010361	Tropical Forest Soil	LDGVHPGYIGGMLLEKFYNRGWVDYVLLVLTPHRAAGR*
Ga0126377_123025941	3300010362	Tropical Forest Soil	SYQIDGAYRDYAGEMPLEKFYNRGWVDCVLLVLTPHRAVSR*
Ga0126377_135365852	3300010362	Tropical Forest Soil	CDRLLHAYQLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTRPRAASR*
Ga0126379_101196354	3300010366	Tropical Forest Soil	DRLVHAYQLRGAHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAAGR*
Ga0126381_1010392412	3300010376	Tropical Forest Soil	VHQGYIGGMLLEKFYNRGWVDYVLIVLTPHRAASR*
Ga0126381_1010845734	3300010376	Tropical Forest Soil	PDEECDRLLHEYQLDGVHRGYIGGMLLEKFYNRGWVDYVLVVLRPHRAASR*
Ga0150983_128234832	3300011120	Forest Soil	AYHLDGVHQGYIGGMLLEKFYNRGWVDYVMLVLTLRRAASR*
Ga0137363_103092263	3300012202	Vadose Zone Soil	YRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0137362_111071742	3300012205	Vadose Zone Soil	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRATSR*
Ga0137384_110454801	3300012357	Vadose Zone Soil	DRLVHAYQLHGAHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0137360_114534281	3300012361	Vadose Zone Soil	HAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAGSR*
Ga0137404_109238961	3300012929	Vadose Zone Soil	LLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR*
Ga0182036_103835131	3300016270	Soil	STGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0182041_114993923	3300016294	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLFVLTLRRAASR
Ga0182041_123254711	3300016294	Soil	RLLHAYQLGDVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRTARLVAD
Ga0182033_108038793	3300016319	Soil	YRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0182033_117692102	3300016319	Soil	YRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0182035_120675061	3300016341	Soil	TRSDEECDRLLHTYRLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRTASR
Ga0182034_114771582	3300016371	Soil	AYQLDGVHRGYIGGMLLEKFYNLGWVDYVLLVLTPHGATSR
Ga0182037_103925351	3300016404	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0182037_114955351	3300016404	Soil	DRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTRHRAASR
Ga0182037_116539171	3300016404	Soil	LVHAYQLDGVHRGYIGGILLEKFYNRGWVDYVLLVLTPHGVTGR
Ga0182039_121787142	3300016422	Soil	GVHQGYIGGMLLEKFYNRGWVDYVLLVLTPQRAASC
Ga0182038_112457221	3300016445	Soil	GVHRGYIGGMLLEKFYNRGWVDYVLLVLTPNRTASR
Ga0210403_104336283	3300020580	Soil	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210403_106630311	3300020580	Soil	TRSDEECDRLLHAYRLDGVHWGYIGGMLLEKFYNRGWVDYVLVVLTLHRAASR
Ga0210403_107336851	3300020580	Soil	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASRRGIAKRE
Ga0210399_108842001	3300020581	Soil	VHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0210401_106123662	3300020583	Soil	LLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLVVLTPHRAANR
Ga0210406_113776761	3300021168	Soil	HAYNLDGVHQGYVGGMLLEKFYNRGWVDYVLLVLTLHRAANR
Ga0210408_103440731	3300021178	Soil	QAYHLDGVHQGYLGRILLEKFYNRGWVDYVLLVLTLHRAASP
Ga0210408_105248361	3300021178	Soil	LDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210389_104840611	3300021404	Soil	VHWGYIGGMLLEKFYNRGWVDYVLVVLTLHRAASR
Ga0210384_102432121	3300021432	Soil	VHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210384_104669552	3300021432	Soil	LLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210384_108857593	3300021432	Soil	DGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210402_117357022	3300021478	Soil	LVHAYQRHGVHLGYIGGMLLEKFYNRGWVDYVLLVLAPHRAASR
Ga0126371_132426531	3300021560	Tropical Forest Soil	LLRAYKRDGAHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRIASR
Ga0209648_101361434	3300026551	Grasslands Soil	SCLSRTKCDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLLLTPHRAASR
Ga0209528_11270611	3300027610	Forest Soil	RLLHAYRLDGVHRGYIGGMLLEKFYNRGWVAYVMLVLTLHRAASR
Ga0209106_10346521	3300027616	Forest Soil	LLHAYHLHGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0209526_100195131	3300028047	Forest Soil	RLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0209526_108328601	3300028047	Forest Soil	RLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVMLALTLHRAASR
Ga0222749_101172863	3300029636	Soil	GVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0170823_162639001	3300031128	Forest Soil	LDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAGIAKRQ
Ga0170824_1187851371	3300031231	Forest Soil	LHTRSDEECDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHR
Ga0318516_107707721	3300031543	Soil	LHAYLLDGAHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRFASR
Ga0318538_100015061	3300031546	Soil	ECDRLLRAYQLDGAHPGYIGGMLLEKFYNREWVDYVLLVLKPHRLASR
Ga0318538_100847601	3300031546	Soil	IASTGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318571_102402242	3300031549	Soil	AHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRFASR
Ga0318573_107194762	3300031564	Soil	LLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0318515_106979841	3300031572	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0318561_108150881	3300031679	Soil	DEECDRLLHAYRRSGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPQRAASC
Ga0318572_102244263	3300031681	Soil	ECDRLLHAYQLHGVHRGYIGGLLLEKFYNRGWVDYVLLVLTLCGAASR
Ga0318572_103966131	3300031681	Soil	YQLDGVHRRYIGGILLEKFYNRGWVDYVLLVLTPHGVTGR
Ga0310686_1076531371	3300031708	Soil	HTRPDEECDRLLHAYQLHGAHRGYIGGLLLEKFYNRGWVDYVLLVLTPHSAAGR
Ga0306917_110001701	3300031719	Soil	DEECDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318500_100180781	3300031724	Soil	CMRIASTGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318501_104622421	3300031736	Soil	LLHAYRVDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHLAASR
Ga0318509_103185941	3300031768	Soil	SDEECDRLLHAYHLDGAHQGYIGGMLVEKFHNRGWVDYVLLVLTLHRTASR
Ga0318546_105111172	3300031771	Soil	LLHAYHLDGAHQGYIGGMLVEKFYNRGWVDYVLLVLTLHRTASR
Ga0318508_12235291	3300031780	Soil	AYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318557_102028893	3300031795	Soil	PDEECDRLAHAYQLHGLHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRPASR
Ga0318557_103764061	3300031795	Soil	YQLDGAHPGYIGGMLLEKFYNRDWVDYVLLVLKPHRLASR
Ga0318576_102610441	3300031796	Soil	SDEECDHLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLALTLRRAARR
Ga0318565_102849892	3300031799	Soil	LHSAHRGYIGGLLLEKFYNRGWVDYVLLVLTPRGAASR
Ga0318568_109003271	3300031819	Soil	HVHTRSDEECGRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0318527_105301811	3300031859	Soil	PTRSDEECDRLLHAYHLDGAHQGYIGGMLVEKFHNRGWVDYVLLVLTLHRTASR
Ga0306919_102244652	3300031879	Soil	AYQLHGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPNRTASR
Ga0318536_101922442	3300031893	Soil	CGRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0318522_102926192	3300031894	Soil	HAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0306923_100796196	3300031910	Soil	ECDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTRHRAASR
Ga0306921_120249221	3300031912	Soil	LDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0310912_103418251	3300031941	Soil	ECGRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0310912_108173022	3300031941	Soil	LHGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRTARLVAD
Ga0310916_114034182	3300031942	Soil	AYRRSGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPQRAASC
Ga0310913_101261551	3300031945	Soil	AYRVDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHLAASR
Ga0310913_104213073	3300031945	Soil	TRSDEECDRLSHAYRLDGVHRGYIGGILLEKFYNRGWVDYVMLVLTLHRAASR
Ga0310913_107615693	3300031945	Soil	TRSDEECDHLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0310909_100472895	3300031947	Soil	DRLAHAYQLHGLHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRPASR
Ga0306926_109962053	3300031954	Soil	DGAHRGYIGGLLLEKFYNRGWVDYVLLVLTPRGAASR
Ga0306922_101551884	3300032001	Soil	AHRGYIGGLLLEKFYNRGWVDYVLLVLTPRGAASR
Ga0318549_101903121	3300032041	Soil	VTGVHRGYIGGMLLEKFYNLGWVDYVLLVLTPHGATSR
Ga0318545_100128924	3300032042	Soil	VLTRSDEECDRLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318532_102124422	3300032051	Soil	YRLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRTASR
Ga0318533_107795691	3300032059	Soil	YHLDGVHQGYIGGMLLEKFYKRGWVDYVLLVLTPHRAASR
Ga0318533_109040751	3300032059	Soil	TRSDEECDRLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLFVLTLRRAASR
Ga0318510_101236913	3300032064	Soil	YMRIASTGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318513_102079311	3300032065	Soil	LLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLFVLTLRRAASR
Ga0318553_106487592	3300032068	Soil	SDEECDRLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0306924_105486193	3300032076	Soil	GAHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASG
Ga0306924_115331302	3300032076	Soil	DEECDRLLHTYHLDAVHRGYIGGLLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0306924_118456061	3300032076	Soil	GVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0306924_122253912	3300032076	Soil	HLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTRHRAASR
Ga0307472_1016514061	3300032205	Hardwood Forest Soil	RSEEECDRLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVMLVLTLRRAASR
Ga0306920_1015221202	3300032261	Soil	LHTYQLHGAHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASG
Ga0306920_1032651711	3300032261	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLLALTLRRAARR
Ga0306920_1039873571	3300032261	Soil	CDRLLHAYRVDGVHQGYIGGMLLEKFYNREWVDYVLLVLTLHRAASR
Ga0373959_0218136_3_140	3300034820	Rhizosphere Soil	RLLHAYQLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAAGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084054

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences