Basic Information | |
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Family ID | F083982 |
Family Type | Metagenome |
Number of Sequences | 112 |
Average Sequence Length | 41 residues |
Representative Sequence | VTNGVAVRMAILYLLISGATETGTHPALEVKPKESANASD |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 112 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 95.54 % |
% of genes from short scaffolds (< 2000 bps) | 85.71 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.35 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (98.214 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.321 % of family members) |
Environment Ontology (ENVO) | Unclassified (23.214 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.536 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 29.41% β-sheet: 0.00% Coil/Unstructured: 70.59% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.35 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Freshwater Sediment Vadose Zone Soil Tropical Forest Soil Glacier Forefield Soil Grasslands Soil Surface Soil Peatlands Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Peatland Tropical Peatland Tropical Forest Soil Peat Soil Biofilm Activated Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1025623291 | 3300000955 | Soil | VSVRMAILYLLMVGAAEGSTHPALAGRREPPSKETAHASD* |
Ga0062389_1000000071 | 3300004092 | Bog Forest Soil | VLEQVTNGVAVRMAILYLLTIGATEGEHPALEGSALKPKESAHASD* |
Ga0062386_1014025592 | 3300004152 | Bog Forest Soil | GVSVRMAILYLLMVGATEGTHPALEGKTAAPKESAHASD* |
Ga0066672_104282941 | 3300005167 | Soil | LEQVTNGVAVRMAILYLLVSGATETDTHPALAVKPKESANASD* |
Ga0066680_107048192 | 3300005174 | Soil | TNGVAVRMAILYLLTSGATEADTHPALEVKSKESTNASD* |
Ga0070730_110609301 | 3300005537 | Surface Soil | VTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD* |
Ga0066707_102510212 | 3300005556 | Soil | VTNGVAVRMAILYLLVSGATETDTHPALAVKPKESANASD* |
Ga0066699_101370911 | 3300005561 | Soil | VAVRMAILYLVIAGATESGTHPALEAKPKESANATD* |
Ga0066691_100769233 | 3300005586 | Soil | NGVAVRMAILYLLISGASESGTHPALEVKSKESANASD* |
Ga0066665_113979062 | 3300006796 | Soil | EQVTNGVAVRMAILYLLISGATEASTHPALEVKPKESANATD* |
Ga0066659_110259591 | 3300006797 | Soil | NGVAVRMAILYLLIGGAADDVPHPAIEAQPRESTHAAD* |
Ga0099793_102317812 | 3300007258 | Vadose Zone Soil | VTNGVAVRMAILYLLISGATETGTHPALEVKPKESANASD* |
Ga0099795_106458742 | 3300007788 | Vadose Zone Soil | LEQVTNGVAVRMAILYLLISGATETDAHPALEVKRKESANASD* |
Ga0099830_108952892 | 3300009088 | Vadose Zone Soil | AVRMAILYLLASGATEADAHPALEVKPKESTNASD* |
Ga0099830_117070732 | 3300009088 | Vadose Zone Soil | VLEQVTNGVAVRMAILYLLISGATETDAHPALQMKPKESANASD* |
Ga0099828_105579862 | 3300009089 | Vadose Zone Soil | VAVRMAILYLLISGAAETDTHPALEVKRKESANASD* |
Ga0066709_1013733811 | 3300009137 | Grasslands Soil | TNGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD* |
Ga0131092_107909501 | 3300009870 | Activated Sludge | QVTNGVSVRMAILYLLMVGAVEGATHPALAAAAENKPKESAHASD* |
Ga0099796_103045911 | 3300010159 | Vadose Zone Soil | NGVAIRMAILYLLISGATETGTHPALEVKSKESANASD* |
Ga0134109_104416791 | 3300010320 | Grasslands Soil | NGVAVRMAILYLLISGATETGTHPALEVKRKESANASD* |
Ga0134067_100086304 | 3300010321 | Grasslands Soil | VTNGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD* |
Ga0134080_105214512 | 3300010333 | Grasslands Soil | QSAIVEEVRNGVAVRMAILYLLISGATETDTHPVLQAKSKESANASD* |
Ga0134071_104095271 | 3300010336 | Grasslands Soil | QVTNGVAVRMAILYLLISGATETDAHPALEMKPKESANASD* |
Ga0126370_114465061 | 3300010358 | Tropical Forest Soil | QVTNGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD* |
Ga0126372_109118881 | 3300010360 | Tropical Forest Soil | TRMAILYLLMVGATEGTHPALESKPEAKSKESAHASD* |
Ga0126372_116193742 | 3300010360 | Tropical Forest Soil | GVAVRMAILYLVIAGATESGTHPALEAKPKESANATD* |
Ga0134066_101420801 | 3300010364 | Grasslands Soil | QVTNGVAVRMAILYLVISGASESGTHPALEAKAKESANASD* |
Ga0126379_106383581 | 3300010366 | Tropical Forest Soil | LEQVTNGVATRMAILYLLMVGATEGTHPALESKAEAKSKESAHATD* |
Ga0136449_1021771812 | 3300010379 | Peatlands Soil | EQVTNGVSVRMAILYLLMVGASEGSTHPALAGKAEPPSKETAHASD* |
Ga0137392_112011722 | 3300011269 | Vadose Zone Soil | LEQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANASD* |
Ga0137391_112418621 | 3300011270 | Vadose Zone Soil | CVLEQVTNGVAVRMAILYLLISGATETDAHPALEAKSRESANATD* |
Ga0137393_110422731 | 3300011271 | Vadose Zone Soil | TNGVAVRMAILYLLISGATETDTHPALEGKPKESANASD* |
Ga0137388_111747892 | 3300012189 | Vadose Zone Soil | VAVRMAILYLLISGATESGTHPALEVKSKESANASD* |
Ga0137388_113857611 | 3300012189 | Vadose Zone Soil | EQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANACD* |
Ga0137388_116611251 | 3300012189 | Vadose Zone Soil | AVRMAILYLLISGATETDAHPALEVKRKESANASD* |
Ga0137399_111121361 | 3300012203 | Vadose Zone Soil | QVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANASD* |
Ga0137362_111184761 | 3300012205 | Vadose Zone Soil | LEQVTNGVAVRMAILYLLIGGAADAHPALEAKPKESANASD* |
Ga0137390_117477522 | 3300012363 | Vadose Zone Soil | VLEQVTNGVAVRMAILYLLISGATETDGHPALEVKPKESANASD* |
Ga0137398_109084922 | 3300012683 | Vadose Zone Soil | VAVRMAILYLLISGATETSTHPALEVKSKESANASD* |
Ga0137396_100124846 | 3300012918 | Vadose Zone Soil | VTNGVAVRMAILYLLISGATETDTHPALEVKRKESANASD* |
Ga0137413_103744741 | 3300012924 | Vadose Zone Soil | SCVLEQVTNGVAVRMAILYLLTSGATEADAHPALEVKPKESANATD* |
Ga0137419_116709822 | 3300012925 | Vadose Zone Soil | LEQVTNGVATRMAILYLLMVGASEGTHPALEMKPDAKSKESAHASD* |
Ga0134077_105826212 | 3300012972 | Grasslands Soil | GVAVRMAILYLLISGATETDTHPALEMKPKESANASD* |
Ga0181539_13173282 | 3300014151 | Bog | MAILYLLMIGATEGTHPALEVKGEPKPKESAHASD* |
Ga0137420_10433913 | 3300015054 | Vadose Zone Soil | QVTNGVAVRMAILYLLISGATETDTHPALEVKRKESANASD* |
Ga0137420_11050541 | 3300015054 | Vadose Zone Soil | MAILYLLMVGASEGMHPALEMKSDAKSKESAHASD* |
Ga0167668_11076382 | 3300015193 | Glacier Forefield Soil | QVTNGVAVRMAILYLLASGATETDAHPALAVKSKESANASD* |
Ga0137403_101866794 | 3300015264 | Vadose Zone Soil | VLEQVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD* |
Ga0134085_104445262 | 3300015359 | Grasslands Soil | EQVTNGVAVRMAILYLLVAGEVEGGAHPATQATPAKDF* |
Ga0182041_111783881 | 3300016294 | Soil | VRMAILYLLMVGASEGTHPALASKTEASPKESAHASD |
Ga0182034_117652641 | 3300016371 | Soil | VSVRMAILYILMIGTADGGHPALEGNNASPSKESAHATD |
Ga0182037_104031152 | 3300016404 | Soil | RSAVLEQVTNGVSVRMAILYILMIGTADGGHPALEGNNASPSKESAHATD |
Ga0187802_102976452 | 3300017822 | Freshwater Sediment | VSVRMAILYLLMVGATEGTHPALEGKIPAPSKESAHASD |
Ga0187786_106185992 | 3300017944 | Tropical Peatland | TRMAILYLLMVGATEGTHPALEGKSESKPKESAHASD |
Ga0187817_109401641 | 3300017955 | Freshwater Sediment | NGVAVRMAILYLLITGATETDAHPALEAQPKGSANASD |
Ga0187778_110060941 | 3300017961 | Tropical Peatland | MAILYLLMVGATEGTHPALEGKSELKPKESAHASD |
Ga0187778_111079381 | 3300017961 | Tropical Peatland | QVTNGVAVRMAILYLLITGATEADTHPALEAKSKESANASD |
Ga0187777_102682711 | 3300017974 | Tropical Peatland | VLEQVTNGVSVRMAILYLLMVGATEGTTHPALAAAAENKPKESAHASD |
Ga0187777_103320251 | 3300017974 | Tropical Peatland | TNGVSVRMAILYLLMIGATEGTTHPALEGRPAPKESAHASD |
Ga0187878_12286751 | 3300018005 | Peatland | NGVAVRMAILYLLMIGATEGTHPALEVKGETKPKESAHASD |
Ga0187805_100156014 | 3300018007 | Freshwater Sediment | CVLEQVTNGVAVRMAILYLLISGATETDTHPALEAQPKGSANASD |
Ga0187772_1000039516 | 3300018085 | Tropical Peatland | VSVRMAILYLLMLGATEGTHPALEGKSAAPTKESAHASD |
Ga0187769_105253871 | 3300018086 | Tropical Peatland | VRMAILYLLMVGATEGTHPALEVNGQSKSKESAHASD |
Ga0187769_106478942 | 3300018086 | Tropical Peatland | GVAVRMAILYLLIAGATESGTHPALEAKPKESANASD |
Ga0187771_115710692 | 3300018088 | Tropical Peatland | VLEQVTNGVAVRMAILYLLMVGATEGTHPALEGTLEPKPKESAHASD |
Ga0210407_102070912 | 3300020579 | Soil | NGVAIRMAILYLLISGATETGTHPALEVKSKESANASD |
Ga0210407_103311432 | 3300020579 | Soil | AVRMAILYLLISGATETDAHPALEVKSKESANASD |
Ga0210407_109078452 | 3300020579 | Soil | VLEQVTNGVAVRMAILYLLISGATESGTHPALEVKSKESASASD |
Ga0210403_100218656 | 3300020580 | Soil | AVLEQVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD |
Ga0210401_114801122 | 3300020583 | Soil | RMAILYLLMVGADEGTHPALEVKPDAKSKESAHASD |
Ga0210390_110856441 | 3300021474 | Soil | MAILYLLMVGASEGTHPALEIKPDAKSKESAHASD |
Ga0187846_103650822 | 3300021476 | Biofilm | VLEQVTNGVSVRMAILYLLMVGASAGTHPALESKPEVSPRESAHASD |
Ga0179589_105079011 | 3300024288 | Vadose Zone Soil | VATRMAILYLLMVGASEGTHPALEMKSDAKSKESAHASD |
Ga0209350_10763471 | 3300026277 | Grasslands Soil | SCVLEQVTNGVAVRMAILYLLISGATETDTHPALQAKPHASD |
Ga0209470_13387822 | 3300026324 | Soil | NGVAVRMAILYLVISGASESGTHPALEAKAKESANASD |
Ga0209802_10015111 | 3300026328 | Soil | EQVTNGVAVRMAILYLLISGATETDTHPALQVKSKESANASD |
Ga0179587_108944722 | 3300026557 | Vadose Zone Soil | NGVAVLMAILYLLISGATETDTHPALEVKRKESANASD |
Ga0207856_10539462 | 3300026983 | Tropical Forest Soil | TNGVSVRMAILYLLMAGASEGTHPALESKRENTPKESAHASD |
Ga0209178_12044652 | 3300027725 | Agricultural Soil | CVLEQVTNGVAVRMAILYLLVTGATEGGTHPALEEKSKESANASD |
Ga0209701_102502641 | 3300027862 | Vadose Zone Soil | GVAVRMAILYLLISGATESGTHPALEVKSKESANASD |
Ga0310038_102919222 | 3300030707 | Peatlands Soil | RMAILYLLMIGATEGTHPALEGKGETKPKESAHATD |
Ga0170822_103371031 | 3300031122 | Forest Soil | QSAVLEQVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD |
Ga0310915_104062742 | 3300031573 | Soil | NGVATRMAILYLLMVGATEGTHPALESKPEAKSKESAHASD |
Ga0307474_102709542 | 3300031718 | Hardwood Forest Soil | MAILYLLMVGASEGIHPALEGKPETPPKESAHASD |
Ga0307474_108964991 | 3300031718 | Hardwood Forest Soil | SAVLEQVTNGVAVRMAILYLLMIGATEGPHPALEGKADNKPKESAHVSD |
Ga0307469_121439752 | 3300031720 | Hardwood Forest Soil | EQVTNGVAVRMAILYLLIGGATETDTHPALQAKPKESANASD |
Ga0307468_1007339551 | 3300031740 | Hardwood Forest Soil | VLEQVTNGVATRMAILYLLMVGASEGTHPALEVKTDAKSKESAHASD |
Ga0307475_100170211 | 3300031754 | Hardwood Forest Soil | ATRMAILYLLMAGASEGPHPALEVKTDANSKESAHASD |
Ga0307475_101615453 | 3300031754 | Hardwood Forest Soil | QVTNGVATRMAILYLLMVGASEGTHPALEMKSDAKSKESAHASD |
Ga0318547_106909462 | 3300031781 | Soil | VRMAILYLLMAGASEGAHPALESKREDTPKESAHASD |
Ga0318567_107348752 | 3300031821 | Soil | VTNGVSVRMAILYLLMAGASEGTHPALESKREDTPKESAHASD |
Ga0307478_101193921 | 3300031823 | Hardwood Forest Soil | VAVRMAILYLLIGGATESGTHPALEAKSKESANASD |
Ga0318520_109360331 | 3300031897 | Soil | VLEQVTNGVSVRMAILYLLMVGAAEGSTHPALAGKPEPPSKETAHASD |
Ga0306923_102651083 | 3300031910 | Soil | LEQVTNGVSVRMAILYLLMAGASEGTHPALDAKTEASPQESAHASD |
Ga0306923_118172901 | 3300031910 | Soil | RMAILYLLMAGASEGTHPALEDKRENTPKESAHASD |
Ga0310910_106161832 | 3300031946 | Soil | MAILYLLMAGASEGTHPALASKTEASPKESAHASD |
Ga0307479_107194352 | 3300031962 | Hardwood Forest Soil | NGVSVRMAILYLLMVGASEGIHPALEGKPETPPKESAHASD |
Ga0307479_121352471 | 3300031962 | Hardwood Forest Soil | NGVAVRMAILYLLISGATETDTHPALEVKPKESANATD |
Ga0318570_105806662 | 3300032054 | Soil | VTNGVSVRMAILYLLMVGASEGTHPALASKTEASPKESAHASD |
Ga0318525_103210931 | 3300032089 | Soil | RMAILYLLMVGASEGTHPALASKTEASPKESAHASD |
Ga0311301_115743311 | 3300032160 | Peatlands Soil | MAILYLLMIGATEGTHPALEVKGETKPKESAHASD |
Ga0307471_1001122514 | 3300032180 | Hardwood Forest Soil | LEQVTNGVAVRMAILYLLISGASETGTHPALEVKPKESANASD |
Ga0307471_1004298081 | 3300032180 | Hardwood Forest Soil | GPQSAVLEQVTNGVATRMAILYLLMVGASEGTHPALEMKPDAKSKESAHASD |
Ga0307471_1012772091 | 3300032180 | Hardwood Forest Soil | EQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANATD |
Ga0307471_1023719061 | 3300032180 | Hardwood Forest Soil | NGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD |
Ga0307471_1038455351 | 3300032180 | Hardwood Forest Soil | TNGVAVRMAILYLLISGATETDTHPALEVKPKESADATD |
Ga0335082_101760691 | 3300032782 | Soil | EQVTNGVSVRMAILYLLMVGATEGTTHPALAATAENKSKESAHASD |
Ga0335080_106466321 | 3300032828 | Soil | SVRMAILYLLMVGAAEGSTHPALAGRPEPPSKETAHASD |
Ga0326728_101799083 | 3300033402 | Peat Soil | LEQVTNGVAVRMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD |
Ga0326728_101827101 | 3300033402 | Peat Soil | VRMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD |
Ga0326728_106948222 | 3300033402 | Peat Soil | VAVRMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD |
Ga0314867_145897_428_535 | 3300033808 | Peatland | MAILYLLMIGATEGTHPALEGTRETKPKEPAHAPD |
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