NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F083982

Metagenome Family F083982

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F083982
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 41 residues
Representative Sequence VTNGVAVRMAILYLLISGATETGTHPALEVKPKESANASD
Number of Associated Samples 92
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 95.54 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.214 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(22.321 % of family members)
Environment Ontology (ENVO) Unclassified
(23.214 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.536 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1JGI1027J12803_1025623291
2Ga0062389_1000000071
3Ga0062386_1014025592
4Ga0066672_104282941
5Ga0066680_107048192
6Ga0070730_110609301
7Ga0066707_102510212
8Ga0066699_101370911
9Ga0066691_100769233
10Ga0066665_113979062
11Ga0066659_110259591
12Ga0099793_102317812
13Ga0099795_106458742
14Ga0099830_108952892
15Ga0099830_117070732
16Ga0099828_105579862
17Ga0066709_1013733811
18Ga0131092_107909501
19Ga0099796_103045911
20Ga0134109_104416791
21Ga0134067_100086304
22Ga0134080_105214512
23Ga0134071_104095271
24Ga0126370_114465061
25Ga0126372_109118881
26Ga0126372_116193742
27Ga0134066_101420801
28Ga0126379_106383581
29Ga0136449_1021771812
30Ga0137392_112011722
31Ga0137391_112418621
32Ga0137393_110422731
33Ga0137388_111747892
34Ga0137388_113857611
35Ga0137388_116611251
36Ga0137399_111121361
37Ga0137362_111184761
38Ga0137390_117477522
39Ga0137398_109084922
40Ga0137396_100124846
41Ga0137413_103744741
42Ga0137419_116709822
43Ga0134077_105826212
44Ga0181539_13173282
45Ga0137420_10433913
46Ga0137420_11050541
47Ga0167668_11076382
48Ga0137403_101866794
49Ga0134085_104445262
50Ga0182041_111783881
51Ga0182034_117652641
52Ga0182037_104031152
53Ga0187802_102976452
54Ga0187786_106185992
55Ga0187817_109401641
56Ga0187778_110060941
57Ga0187778_111079381
58Ga0187777_102682711
59Ga0187777_103320251
60Ga0187878_12286751
61Ga0187805_100156014
62Ga0187772_1000039516
63Ga0187769_105253871
64Ga0187769_106478942
65Ga0187771_115710692
66Ga0210407_102070912
67Ga0210407_103311432
68Ga0210407_109078452
69Ga0210403_100218656
70Ga0210401_114801122
71Ga0210390_110856441
72Ga0187846_103650822
73Ga0179589_105079011
74Ga0209350_10763471
75Ga0209470_13387822
76Ga0209802_10015111
77Ga0179587_108944722
78Ga0207856_10539462
79Ga0209178_12044652
80Ga0209701_102502641
81Ga0310038_102919222
82Ga0170822_103371031
83Ga0310915_104062742
84Ga0307474_102709542
85Ga0307474_108964991
86Ga0307469_121439752
87Ga0307468_1007339551
88Ga0307475_100170211
89Ga0307475_101615453
90Ga0318547_106909462
91Ga0318567_107348752
92Ga0307478_101193921
93Ga0318520_109360331
94Ga0306923_102651083
95Ga0306923_118172901
96Ga0310910_106161832
97Ga0307479_107194352
98Ga0307479_121352471
99Ga0318570_105806662
100Ga0318525_103210931
101Ga0311301_115743311
102Ga0307471_1001122514
103Ga0307471_1004298081
104Ga0307471_1012772091
105Ga0307471_1023719061
106Ga0307471_1038455351
107Ga0335082_101760691
108Ga0335080_106466321
109Ga0326728_101799083
110Ga0326728_101827101
111Ga0326728_106948222
112Ga0314867_145897_428_535
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 29.41%    β-sheet: 0.00%    Coil/Unstructured: 70.59%
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510152025303540VTNGVAVRMAILYLLISGATETGTHPALEVKPKESANASDSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
98.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Bog
Freshwater Sediment
Vadose Zone Soil
Tropical Forest Soil
Glacier Forefield Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Peatland
Tropical Peatland
Tropical Forest Soil
Peat Soil
Biofilm
Activated Sludge
22.3%3.6%6.2%8.9%11.6%4.5%12.5%8.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10256232913300000955SoilVSVRMAILYLLMVGAAEGSTHPALAGRREPPSKETAHASD*
Ga0062389_10000000713300004092Bog Forest SoilVLEQVTNGVAVRMAILYLLTIGATEGEHPALEGSALKPKESAHASD*
Ga0062386_10140255923300004152Bog Forest SoilGVSVRMAILYLLMVGATEGTHPALEGKTAAPKESAHASD*
Ga0066672_1042829413300005167SoilLEQVTNGVAVRMAILYLLVSGATETDTHPALAVKPKESANASD*
Ga0066680_1070481923300005174SoilTNGVAVRMAILYLLTSGATEADTHPALEVKSKESTNASD*
Ga0070730_1106093013300005537Surface SoilVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD*
Ga0066707_1025102123300005556SoilVTNGVAVRMAILYLLVSGATETDTHPALAVKPKESANASD*
Ga0066699_1013709113300005561SoilVAVRMAILYLVIAGATESGTHPALEAKPKESANATD*
Ga0066691_1007692333300005586SoilNGVAVRMAILYLLISGASESGTHPALEVKSKESANASD*
Ga0066665_1139790623300006796SoilEQVTNGVAVRMAILYLLISGATEASTHPALEVKPKESANATD*
Ga0066659_1102595913300006797SoilNGVAVRMAILYLLIGGAADDVPHPAIEAQPRESTHAAD*
Ga0099793_1023178123300007258Vadose Zone SoilVTNGVAVRMAILYLLISGATETGTHPALEVKPKESANASD*
Ga0099795_1064587423300007788Vadose Zone SoilLEQVTNGVAVRMAILYLLISGATETDAHPALEVKRKESANASD*
Ga0099830_1089528923300009088Vadose Zone SoilAVRMAILYLLASGATEADAHPALEVKPKESTNASD*
Ga0099830_1170707323300009088Vadose Zone SoilVLEQVTNGVAVRMAILYLLISGATETDAHPALQMKPKESANASD*
Ga0099828_1055798623300009089Vadose Zone SoilVAVRMAILYLLISGAAETDTHPALEVKRKESANASD*
Ga0066709_10137338113300009137Grasslands SoilTNGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD*
Ga0131092_1079095013300009870Activated SludgeQVTNGVSVRMAILYLLMVGAVEGATHPALAAAAENKPKESAHASD*
Ga0099796_1030459113300010159Vadose Zone SoilNGVAIRMAILYLLISGATETGTHPALEVKSKESANASD*
Ga0134109_1044167913300010320Grasslands SoilNGVAVRMAILYLLISGATETGTHPALEVKRKESANASD*
Ga0134067_1000863043300010321Grasslands SoilVTNGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD*
Ga0134080_1052145123300010333Grasslands SoilQSAIVEEVRNGVAVRMAILYLLISGATETDTHPVLQAKSKESANASD*
Ga0134071_1040952713300010336Grasslands SoilQVTNGVAVRMAILYLLISGATETDAHPALEMKPKESANASD*
Ga0126370_1144650613300010358Tropical Forest SoilQVTNGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD*
Ga0126372_1091188813300010360Tropical Forest SoilTRMAILYLLMVGATEGTHPALESKPEAKSKESAHASD*
Ga0126372_1161937423300010360Tropical Forest SoilGVAVRMAILYLVIAGATESGTHPALEAKPKESANATD*
Ga0134066_1014208013300010364Grasslands SoilQVTNGVAVRMAILYLVISGASESGTHPALEAKAKESANASD*
Ga0126379_1063835813300010366Tropical Forest SoilLEQVTNGVATRMAILYLLMVGATEGTHPALESKAEAKSKESAHATD*
Ga0136449_10217718123300010379Peatlands SoilEQVTNGVSVRMAILYLLMVGASEGSTHPALAGKAEPPSKETAHASD*
Ga0137392_1120117223300011269Vadose Zone SoilLEQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANASD*
Ga0137391_1124186213300011270Vadose Zone SoilCVLEQVTNGVAVRMAILYLLISGATETDAHPALEAKSRESANATD*
Ga0137393_1104227313300011271Vadose Zone SoilTNGVAVRMAILYLLISGATETDTHPALEGKPKESANASD*
Ga0137388_1117478923300012189Vadose Zone SoilVAVRMAILYLLISGATESGTHPALEVKSKESANASD*
Ga0137388_1138576113300012189Vadose Zone SoilEQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANACD*
Ga0137388_1166112513300012189Vadose Zone SoilAVRMAILYLLISGATETDAHPALEVKRKESANASD*
Ga0137399_1111213613300012203Vadose Zone SoilQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANASD*
Ga0137362_1111847613300012205Vadose Zone SoilLEQVTNGVAVRMAILYLLIGGAADAHPALEAKPKESANASD*
Ga0137390_1174775223300012363Vadose Zone SoilVLEQVTNGVAVRMAILYLLISGATETDGHPALEVKPKESANASD*
Ga0137398_1090849223300012683Vadose Zone SoilVAVRMAILYLLISGATETSTHPALEVKSKESANASD*
Ga0137396_1001248463300012918Vadose Zone SoilVTNGVAVRMAILYLLISGATETDTHPALEVKRKESANASD*
Ga0137413_1037447413300012924Vadose Zone SoilSCVLEQVTNGVAVRMAILYLLTSGATEADAHPALEVKPKESANATD*
Ga0137419_1167098223300012925Vadose Zone SoilLEQVTNGVATRMAILYLLMVGASEGTHPALEMKPDAKSKESAHASD*
Ga0134077_1058262123300012972Grasslands SoilGVAVRMAILYLLISGATETDTHPALEMKPKESANASD*
Ga0181539_131732823300014151BogMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD*
Ga0137420_104339133300015054Vadose Zone SoilQVTNGVAVRMAILYLLISGATETDTHPALEVKRKESANASD*
Ga0137420_110505413300015054Vadose Zone SoilMAILYLLMVGASEGMHPALEMKSDAKSKESAHASD*
Ga0167668_110763823300015193Glacier Forefield SoilQVTNGVAVRMAILYLLASGATETDAHPALAVKSKESANASD*
Ga0137403_1018667943300015264Vadose Zone SoilVLEQVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD*
Ga0134085_1044452623300015359Grasslands SoilEQVTNGVAVRMAILYLLVAGEVEGGAHPATQATPAKDF*
Ga0182041_1117838813300016294SoilVRMAILYLLMVGASEGTHPALASKTEASPKESAHASD
Ga0182034_1176526413300016371SoilVSVRMAILYILMIGTADGGHPALEGNNASPSKESAHATD
Ga0182037_1040311523300016404SoilRSAVLEQVTNGVSVRMAILYILMIGTADGGHPALEGNNASPSKESAHATD
Ga0187802_1029764523300017822Freshwater SedimentVSVRMAILYLLMVGATEGTHPALEGKIPAPSKESAHASD
Ga0187786_1061859923300017944Tropical PeatlandTRMAILYLLMVGATEGTHPALEGKSESKPKESAHASD
Ga0187817_1094016413300017955Freshwater SedimentNGVAVRMAILYLLITGATETDAHPALEAQPKGSANASD
Ga0187778_1100609413300017961Tropical PeatlandMAILYLLMVGATEGTHPALEGKSELKPKESAHASD
Ga0187778_1110793813300017961Tropical PeatlandQVTNGVAVRMAILYLLITGATEADTHPALEAKSKESANASD
Ga0187777_1026827113300017974Tropical PeatlandVLEQVTNGVSVRMAILYLLMVGATEGTTHPALAAAAENKPKESAHASD
Ga0187777_1033202513300017974Tropical PeatlandTNGVSVRMAILYLLMIGATEGTTHPALEGRPAPKESAHASD
Ga0187878_122867513300018005PeatlandNGVAVRMAILYLLMIGATEGTHPALEVKGETKPKESAHASD
Ga0187805_1001560143300018007Freshwater SedimentCVLEQVTNGVAVRMAILYLLISGATETDTHPALEAQPKGSANASD
Ga0187772_10000395163300018085Tropical PeatlandVSVRMAILYLLMLGATEGTHPALEGKSAAPTKESAHASD
Ga0187769_1052538713300018086Tropical PeatlandVRMAILYLLMVGATEGTHPALEVNGQSKSKESAHASD
Ga0187769_1064789423300018086Tropical PeatlandGVAVRMAILYLLIAGATESGTHPALEAKPKESANASD
Ga0187771_1157106923300018088Tropical PeatlandVLEQVTNGVAVRMAILYLLMVGATEGTHPALEGTLEPKPKESAHASD
Ga0210407_1020709123300020579SoilNGVAIRMAILYLLISGATETGTHPALEVKSKESANASD
Ga0210407_1033114323300020579SoilAVRMAILYLLISGATETDAHPALEVKSKESANASD
Ga0210407_1090784523300020579SoilVLEQVTNGVAVRMAILYLLISGATESGTHPALEVKSKESASASD
Ga0210403_1002186563300020580SoilAVLEQVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD
Ga0210401_1148011223300020583SoilRMAILYLLMVGADEGTHPALEVKPDAKSKESAHASD
Ga0210390_1108564413300021474SoilMAILYLLMVGASEGTHPALEIKPDAKSKESAHASD
Ga0187846_1036508223300021476BiofilmVLEQVTNGVSVRMAILYLLMVGASAGTHPALESKPEVSPRESAHASD
Ga0179589_1050790113300024288Vadose Zone SoilVATRMAILYLLMVGASEGTHPALEMKSDAKSKESAHASD
Ga0209350_107634713300026277Grasslands SoilSCVLEQVTNGVAVRMAILYLLISGATETDTHPALQAKPHASD
Ga0209470_133878223300026324SoilNGVAVRMAILYLVISGASESGTHPALEAKAKESANASD
Ga0209802_100151113300026328SoilEQVTNGVAVRMAILYLLISGATETDTHPALQVKSKESANASD
Ga0179587_1089447223300026557Vadose Zone SoilNGVAVLMAILYLLISGATETDTHPALEVKRKESANASD
Ga0207856_105394623300026983Tropical Forest SoilTNGVSVRMAILYLLMAGASEGTHPALESKRENTPKESAHASD
Ga0209178_120446523300027725Agricultural SoilCVLEQVTNGVAVRMAILYLLVTGATEGGTHPALEEKSKESANASD
Ga0209701_1025026413300027862Vadose Zone SoilGVAVRMAILYLLISGATESGTHPALEVKSKESANASD
Ga0310038_1029192223300030707Peatlands SoilRMAILYLLMIGATEGTHPALEGKGETKPKESAHATD
Ga0170822_1033710313300031122Forest SoilQSAVLEQVTNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD
Ga0310915_1040627423300031573SoilNGVATRMAILYLLMVGATEGTHPALESKPEAKSKESAHASD
Ga0307474_1027095423300031718Hardwood Forest SoilMAILYLLMVGASEGIHPALEGKPETPPKESAHASD
Ga0307474_1089649913300031718Hardwood Forest SoilSAVLEQVTNGVAVRMAILYLLMIGATEGPHPALEGKADNKPKESAHVSD
Ga0307469_1214397523300031720Hardwood Forest SoilEQVTNGVAVRMAILYLLIGGATETDTHPALQAKPKESANASD
Ga0307468_10073395513300031740Hardwood Forest SoilVLEQVTNGVATRMAILYLLMVGASEGTHPALEVKTDAKSKESAHASD
Ga0307475_1001702113300031754Hardwood Forest SoilATRMAILYLLMAGASEGPHPALEVKTDANSKESAHASD
Ga0307475_1016154533300031754Hardwood Forest SoilQVTNGVATRMAILYLLMVGASEGTHPALEMKSDAKSKESAHASD
Ga0318547_1069094623300031781SoilVRMAILYLLMAGASEGAHPALESKREDTPKESAHASD
Ga0318567_1073487523300031821SoilVTNGVSVRMAILYLLMAGASEGTHPALESKREDTPKESAHASD
Ga0307478_1011939213300031823Hardwood Forest SoilVAVRMAILYLLIGGATESGTHPALEAKSKESANASD
Ga0318520_1093603313300031897SoilVLEQVTNGVSVRMAILYLLMVGAAEGSTHPALAGKPEPPSKETAHASD
Ga0306923_1026510833300031910SoilLEQVTNGVSVRMAILYLLMAGASEGTHPALDAKTEASPQESAHASD
Ga0306923_1181729013300031910SoilRMAILYLLMAGASEGTHPALEDKRENTPKESAHASD
Ga0310910_1061618323300031946SoilMAILYLLMAGASEGTHPALASKTEASPKESAHASD
Ga0307479_1071943523300031962Hardwood Forest SoilNGVSVRMAILYLLMVGASEGIHPALEGKPETPPKESAHASD
Ga0307479_1213524713300031962Hardwood Forest SoilNGVAVRMAILYLLISGATETDTHPALEVKPKESANATD
Ga0318570_1058066623300032054SoilVTNGVSVRMAILYLLMVGASEGTHPALASKTEASPKESAHASD
Ga0318525_1032109313300032089SoilRMAILYLLMVGASEGTHPALASKTEASPKESAHASD
Ga0311301_1157433113300032160Peatlands SoilMAILYLLMIGATEGTHPALEVKGETKPKESAHASD
Ga0307471_10011225143300032180Hardwood Forest SoilLEQVTNGVAVRMAILYLLISGASETGTHPALEVKPKESANASD
Ga0307471_10042980813300032180Hardwood Forest SoilGPQSAVLEQVTNGVATRMAILYLLMVGASEGTHPALEMKPDAKSKESAHASD
Ga0307471_10127720913300032180Hardwood Forest SoilEQVTNGVAVRMAILYLLISGATETDTHPALEVKPKESANATD
Ga0307471_10237190613300032180Hardwood Forest SoilNGVATRMAILYLLMVGASEGTHPALEVKPDAKSKESAHASD
Ga0307471_10384553513300032180Hardwood Forest SoilTNGVAVRMAILYLLISGATETDTHPALEVKPKESADATD
Ga0335082_1017606913300032782SoilEQVTNGVSVRMAILYLLMVGATEGTTHPALAATAENKSKESAHASD
Ga0335080_1064663213300032828SoilSVRMAILYLLMVGAAEGSTHPALAGRPEPPSKETAHASD
Ga0326728_1017990833300033402Peat SoilLEQVTNGVAVRMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD
Ga0326728_1018271013300033402Peat SoilVRMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD
Ga0326728_1069482223300033402Peat SoilVAVRMAILYLLMIGATEGTHPALEVKGEPKPKESAHASD
Ga0314867_145897_428_5353300033808PeatlandMAILYLLMIGATEGTHPALEGTRETKPKEPAHAPD


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